Wall clock time and date at job start Sat Apr 11 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47159 * 2 1 4 4 N 1.30830 * 125.96516 * 265.00327 * 3 2 1 5 5 C 1.33239 * 109.82788 * 179.97438 * 4 3 2 6 6 C 1.50704 * 125.52549 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46935 * 15.00167 * 6 5 4 8 8 C 1.52999 * 109.47092 * 255.00620 * 6 5 4 9 9 N 1.46901 * 109.47204 * 135.00171 * 6 5 4 10 10 C 1.46898 * 110.99974 * 226.54725 * 9 6 5 11 11 H 1.09000 * 109.47269 * 33.93449 * 10 9 6 12 12 C 1.53002 * 109.46717 * 273.93434 * 10 9 6 13 13 C 1.52997 * 109.47182 * 153.93778 * 10 9 6 14 14 N 1.46502 * 109.47065 * 304.99899 * 13 10 9 15 15 C 1.34777 * 120.00069 * 180.02562 * 14 13 10 16 16 O 1.21274 * 119.99800 * 359.72006 * 15 14 13 17 17 C 1.50694 * 119.99951 * 179.97438 * 15 14 13 18 18 S 1.80997 * 109.47399 * 179.97438 * 17 15 14 19 19 C 1.76193 * 100.00468 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99943 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00176 * 180.02562 * 19 18 17 22 22 N 1.31633 * 119.99837 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00129 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47066 * 90.00094 * 23 21 19 25 25 H 1.48500 * 109.47229 * 210.00515 * 23 21 19 26 26 H 1.48508 * 109.46794 * 330.00002 * 23 21 19 27 27 N 1.30711 * 108.94800 * 0.26602 * 5 4 3 28 28 N 1.34438 * 125.95573 * 84.97455 * 3 2 1 29 29 H 0.96997 * 126.82205 * 0.02653 * 28 3 2 30 30 H 1.08999 * 109.47188 * 299.99581 * 1 2 3 31 31 H 1.09002 * 109.47587 * 60.00084 * 1 2 3 32 32 H 1.09001 * 109.47193 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47188 * 240.00419 * 2 1 3 34 34 H 1.09005 * 109.47311 * 120.00363 * 2 1 3 35 35 H 1.08996 * 109.47925 * 64.67614 * 8 6 5 36 36 H 1.09002 * 109.47494 * 184.68135 * 8 6 5 37 37 H 1.09005 * 109.46918 * 304.67583 * 8 6 5 38 38 H 1.00903 * 110.99793 * 350.49898 * 9 6 5 39 39 H 1.09006 * 109.46733 * 182.75691 * 12 10 9 40 40 H 1.08993 * 109.47583 * 302.76078 * 12 10 9 41 41 H 1.09003 * 109.47002 * 62.76522 * 12 10 9 42 42 H 1.09001 * 109.47138 * 184.99830 * 13 10 9 43 43 H 1.08997 * 109.47215 * 64.99528 * 13 10 9 44 44 H 0.97003 * 119.99621 * 359.97438 * 14 13 10 45 45 H 1.09000 * 109.47407 * 300.00156 * 17 15 14 46 46 H 1.09001 * 109.47206 * 59.99748 * 17 15 14 47 47 H 0.97008 * 119.99783 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3754 2.1145 -1.0549 5 6 2.7711 3.3321 -0.6860 6 6 3.2422 4.4193 -1.6172 7 1 2.9653 4.1664 -2.6407 8 6 4.7633 4.5517 -1.5184 9 7 2.6143 5.6929 -1.2406 10 6 2.0836 6.3876 -2.4211 11 1 1.7218 5.6545 -3.1421 12 6 3.1918 7.2271 -3.0597 13 6 0.9305 7.3007 -2.0000 14 7 -0.0769 6.5158 -1.2822 15 6 -1.1898 7.1146 -0.8139 16 8 -1.3549 8.3042 -0.9823 17 6 -2.2263 6.3070 -0.0760 18 16 -3.5905 7.3872 0.4223 19 6 -4.6242 6.2176 1.2395 20 1 -4.3223 5.1827 1.3045 21 6 -5.8272 6.6259 1.7986 22 7 -6.5997 5.7520 2.4086 23 14 -6.3499 8.4158 1.6855 24 1 -7.1412 8.6229 0.4461 25 1 -7.1794 8.7648 2.8667 26 1 -5.1443 9.2824 1.6538 27 7 2.6903 3.4287 0.6150 28 7 2.2055 2.1968 1.0841 29 1 2.0336 1.9530 2.0070 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.2319 3.6352 -1.8768 36 1 5.0953 5.3920 -2.1282 37 1 5.0464 4.7224 -0.4797 38 1 1.8924 5.5498 -0.5503 39 1 2.7860 7.7807 -3.9066 40 1 3.5873 7.9272 -2.3239 41 1 3.9917 6.5715 -3.4040 42 1 0.4793 7.7481 -2.8856 43 1 1.3097 8.0879 -1.3483 44 1 0.0567 5.5649 -1.1446 45 1 -2.6053 5.5198 -0.7278 46 1 -1.7754 5.8596 0.8097 47 1 -7.4403 6.0375 2.7997 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690555309.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:02 Heat of formation + Delta-G solvation = 11.258125 kcal Electronic energy + Delta-G solvation = -27257.154837 eV Core-core repulsion = 23408.467384 eV Total energy + Delta-G solvation = -3848.687453 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.28620 -40.89050 -38.92879 -36.11475 -34.94627 -34.70500 -33.85695 -32.90084 -31.12197 -30.57757 -29.74308 -27.92796 -26.73121 -25.43233 -24.81993 -22.06381 -21.93585 -21.54044 -21.11689 -19.95441 -18.98203 -18.06549 -17.59121 -17.13273 -17.10492 -16.78330 -16.55957 -16.31464 -15.84541 -15.59109 -15.18884 -15.09877 -14.93507 -14.74883 -14.27640 -14.00992 -13.63174 -13.46520 -13.40341 -13.35641 -13.26963 -13.23673 -13.03898 -12.99218 -12.69513 -12.54044 -12.32810 -12.27703 -12.02485 -11.90304 -11.76329 -11.20047 -11.16539 -11.14462 -11.10614 -10.59567 -10.59223 -10.26995 -9.62783 -9.04231 -8.54878 -6.26337 0.51544 0.93273 1.29498 1.43664 1.46413 1.52095 1.62669 1.71800 2.11726 2.22910 2.65543 2.71516 2.83437 3.03120 3.52145 3.64279 3.74609 3.78916 4.08117 4.11657 4.12558 4.25053 4.31492 4.35189 4.37640 4.39595 4.57064 4.62868 4.75383 4.79942 4.87629 4.93328 4.99459 5.03697 5.06637 5.17447 5.23900 5.24826 5.31208 5.38646 5.49679 5.67090 5.90392 6.07111 6.11462 6.13614 6.24301 6.90046 7.01250 7.04302 8.57626 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009551 B = 0.003009 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.865474 B = 9303.473008 C =11801.129052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.042 4.042 3 C 0.289 3.711 4 N -0.560 5.560 5 C 0.200 3.800 6 C 0.181 3.819 7 H 0.091 0.909 8 C -0.125 4.125 9 N -0.676 5.676 10 C 0.080 3.920 11 H 0.066 0.934 12 C -0.135 4.135 13 C 0.117 3.883 14 N -0.717 5.717 15 C 0.538 3.462 16 O -0.554 6.554 17 C -0.112 4.112 18 S -0.167 6.167 19 C -0.532 4.532 20 H 0.060 0.940 21 C 0.047 3.953 22 N -0.916 5.916 23 Si 0.914 3.086 24 H -0.261 1.261 25 H -0.257 1.257 26 H -0.237 1.237 27 N -0.324 5.324 28 N -0.475 5.475 29 H 0.453 0.547 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.048 0.952 38 H 0.341 0.659 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.403 0.597 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.477 -11.563 -9.094 28.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.082 4.082 3 C 0.011 3.989 4 N -0.290 5.290 5 C -0.083 4.083 6 C 0.069 3.931 7 H 0.109 0.891 8 C -0.184 4.184 9 N -0.311 5.311 10 C -0.030 4.030 11 H 0.083 0.917 12 C -0.193 4.193 13 C -0.007 4.007 14 N -0.371 5.371 15 C 0.323 3.677 16 O -0.432 6.432 17 C -0.263 4.263 18 S 0.059 5.941 19 C -0.679 4.679 20 H 0.078 0.922 21 C -0.158 4.158 22 N -0.554 5.554 23 Si 0.736 3.264 24 H -0.185 1.185 25 H -0.182 1.182 26 H -0.161 1.161 27 N -0.154 5.154 28 N -0.194 5.194 29 H 0.301 0.699 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.067 0.933 38 H 0.162 0.838 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.239 0.761 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 24.848 -8.729 -9.255 27.915 hybrid contribution -1.486 -2.269 1.216 2.972 sum 23.362 -10.998 -8.039 27.043 Atomic orbital electron populations 1.21760 0.93121 1.04025 1.01868 1.20405 0.96601 0.84196 1.06969 1.25098 0.94175 0.97250 0.82373 1.70377 1.23087 1.04864 1.30670 1.24884 0.98191 0.94491 0.90780 1.20083 0.96533 0.82054 0.94412 0.89077 1.21767 0.91545 1.02552 1.02559 1.60777 1.36909 1.20837 1.12540 1.21995 0.93606 0.95944 0.91456 0.91653 1.21781 0.97338 0.99792 1.00377 1.21726 0.87431 0.94554 0.96957 1.45817 1.20152 1.12876 1.58240 1.19884 0.82227 0.87340 0.78243 1.90691 1.77865 1.16536 1.58115 1.23248 0.97360 1.02096 1.03602 1.84675 1.20128 1.16469 1.72784 1.22441 1.07654 0.96281 1.41542 0.92166 1.25554 0.95068 1.02172 0.93031 1.70013 1.12781 1.36375 1.36191 0.85876 0.80863 0.80318 0.79384 1.18539 1.18155 1.16100 1.77992 1.22433 1.02330 1.12598 1.48033 1.50468 1.09488 1.11392 0.69894 0.92937 0.93491 0.88962 0.87046 0.86371 0.91971 0.89616 0.93253 0.83843 0.90970 0.91990 0.90759 0.90346 0.91401 0.76082 0.87241 0.87519 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.89 71.98 0.71 -0.85 16 2 C -0.04 -0.36 6.56 29.85 0.20 -0.17 16 3 C 0.29 4.81 7.49 138.22 1.04 5.84 16 4 N -0.56 -11.97 11.19 -179.72 -2.01 -13.98 16 5 C 0.20 4.33 6.62 138.63 0.92 5.25 16 6 C 0.18 3.18 3.22 44.17 0.14 3.32 16 7 H 0.09 1.46 7.15 -2.39 -0.02 1.45 16 8 C -0.13 -1.91 9.50 71.98 0.68 -1.22 16 9 N -0.68 -12.50 6.21 -473.30 -2.94 -15.43 16 10 C 0.08 1.28 2.75 44.92 0.12 1.40 16 11 H 0.07 0.96 7.34 -2.39 -0.02 0.95 16 12 C -0.13 -1.69 9.34 71.98 0.67 -1.02 16 13 C 0.12 2.56 5.31 86.38 0.46 3.01 16 14 N -0.72 -18.58 4.98 -463.08 -2.31 -20.89 16 15 C 0.54 19.33 7.85 87.65 0.69 20.02 16 16 O -0.55 -24.18 15.86 -3.01 -0.05 -24.22 16 17 C -0.11 -4.41 6.16 71.23 0.44 -3.98 16 18 S -0.17 -8.58 18.55 -56.49 -1.05 -9.63 16 19 C -0.53 -31.27 10.04 67.95 0.68 -30.58 16 20 H 0.06 3.74 8.03 -2.91 -0.02 3.71 16 21 C 0.05 2.79 5.50 84.86 0.47 3.26 16 22 N -0.92 -55.79 13.97 21.65 0.30 -55.49 16 23 Si 0.91 45.15 27.74 68.60 1.90 47.05 16 24 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.24 -11.73 6.74 99.48 0.67 -11.06 16 27 N -0.32 -7.39 12.48 -51.33 -0.64 -8.03 16 28 N -0.47 -8.07 7.45 -50.70 -0.38 -8.45 16 29 H 0.45 4.97 8.96 -213.10 -1.91 3.06 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.12 0.35 8.14 -2.38 -0.02 0.33 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 1.05 6.79 -2.39 -0.02 1.03 16 37 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.34 7.50 5.86 -89.69 -0.53 6.98 16 39 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 0.76 6.89 -2.39 -0.02 0.74 16 42 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.40 9.03 7.39 -92.71 -0.69 8.35 16 45 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 46 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 47 H 0.28 15.61 8.31 -92.70 -0.77 14.83 16 Total: -1.00 -77.98 402.18 -2.10 -80.08 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: -2.15 Total: 24.72 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 7.22 Total: 4.29 kcal Atomic # 7 Polarization: -114.31 SS G_CDS: -7.97 Total: -122.28 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.05 Total: -24.22 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.90 Total: 47.05 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.05 Total: -9.63 kcal Total: -77.98 -2.10 -80.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690555309.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.337 kcal (2) G-P(sol) polarization free energy of solvation -77.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds