Wall clock time and date at job start Sat Apr 11 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30838 * 125.95941 * 2 1 4 4 C 1.33239 * 109.82373 * 180.12725 * 3 2 1 5 5 C 1.50700 * 125.52490 * 179.85888 * 4 3 2 6 6 H 1.09005 * 109.46915 * 344.71448 * 5 4 3 7 7 C 1.52997 * 109.47306 * 104.71227 * 5 4 3 8 8 N 1.46898 * 109.47266 * 224.71536 * 5 4 3 9 9 C 1.46904 * 111.00108 * 56.04487 * 8 5 4 10 10 C 1.46900 * 111.00042 * 179.97438 * 8 5 4 11 11 C 1.53008 * 109.46816 * 162.93789 * 10 8 5 12 12 H 1.08992 * 109.47099 * 301.39237 * 11 10 8 13 13 C 1.53007 * 109.46811 * 181.40021 * 11 10 8 14 14 N 1.46490 * 109.47211 * 61.40216 * 11 10 8 15 15 C 1.34780 * 119.99853 * 205.95685 * 14 11 10 16 16 O 1.21279 * 120.00117 * 359.97438 * 15 14 11 17 17 C 1.50702 * 120.00084 * 179.97438 * 15 14 11 18 18 S 1.80993 * 109.47101 * 180.02562 * 17 15 14 19 19 C 1.76203 * 100.00072 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00183 * 359.97438 * 19 18 17 21 21 C 1.38800 * 120.00079 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00045 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00082 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46832 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47011 * 120.00100 * 23 21 19 26 26 H 1.48500 * 109.47101 * 240.00173 * 23 21 19 27 27 N 1.30717 * 108.95012 * 359.59083 * 4 3 2 28 28 N 1.34423 * 125.96341 * 179.67492 * 2 1 3 29 29 H 0.97009 * 126.82073 * 0.02562 * 28 2 1 30 30 H 1.09000 * 109.46953 * 270.30122 * 1 2 3 31 31 H 1.09005 * 109.46831 * 30.30299 * 1 2 3 32 32 H 1.08998 * 109.47370 * 150.29730 * 1 2 3 33 33 H 1.09005 * 109.46953 * 60.00244 * 7 5 4 34 34 H 1.09005 * 109.47542 * 179.97438 * 7 5 4 35 35 H 1.08998 * 109.47456 * 299.99777 * 7 5 4 36 36 H 1.09000 * 109.47206 * 197.16902 * 9 8 5 37 37 H 1.08998 * 109.46880 * 317.16330 * 9 8 5 38 38 H 1.08998 * 109.47016 * 77.16429 * 9 8 5 39 39 H 1.08997 * 109.47148 * 42.93888 * 10 8 5 40 40 H 1.09001 * 109.47342 * 282.93248 * 10 8 5 41 41 H 1.08999 * 109.47199 * 59.99646 * 13 11 10 42 42 H 1.08991 * 109.46888 * 180.02562 * 13 11 10 43 43 H 1.09004 * 109.46998 * 299.99633 * 13 11 10 44 44 H 0.97000 * 120.00522 * 25.94661 * 14 11 10 45 45 H 1.09000 * 109.47249 * 299.99977 * 17 15 14 46 46 H 1.08998 * 109.47155 * 59.99938 * 17 15 14 47 47 H 0.96996 * 120.00286 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0028 5 6 4.7372 1.6236 -0.0067 6 1 4.4065 2.6262 -0.2779 7 6 5.3680 1.6541 1.3869 8 7 5.7294 1.1544 -0.9831 9 6 5.1321 1.0226 -2.3188 10 6 6.8981 2.0438 -1.0149 11 6 8.0660 1.3271 -1.6958 12 1 8.2961 0.4105 -1.1527 13 6 9.2935 2.2405 -1.6978 14 7 7.6996 0.9984 -3.0756 15 6 8.2886 -0.0409 -3.6998 16 8 9.1221 -0.7036 -3.1194 17 6 7.9114 -0.3794 -5.1190 18 16 8.8674 -1.8134 -5.6717 19 6 8.2448 -1.9827 -7.3114 20 1 7.4938 -1.2983 -7.6772 21 6 8.7196 -2.9958 -8.1329 22 7 9.6354 -3.8297 -7.6872 23 14 8.0591 -3.1757 -9.8708 24 1 7.0456 -2.1209 -10.1269 25 1 9.1745 -3.0359 -10.8412 26 1 7.4325 -4.5131 -10.0262 27 7 3.6194 -0.6168 0.0042 28 7 2.2964 -1.0880 0.0062 29 1 2.0093 -2.0146 0.0111 30 1 -0.3633 0.0054 1.0277 31 1 -0.3633 0.8873 -0.5186 32 1 -0.3634 -0.8926 -0.5092 33 1 5.6986 0.6515 1.6580 34 1 6.2232 2.3299 1.3839 35 1 4.6318 2.0023 2.1114 36 1 5.7730 0.4006 -2.9436 37 1 4.1489 0.5601 -2.2331 38 1 5.0313 2.0094 -2.7706 39 1 7.1796 2.3104 0.0037 40 1 6.6519 2.9476 -1.5723 41 1 9.5660 2.4851 -0.6712 42 1 10.1252 1.7301 -2.1832 43 1 9.0634 3.1571 -2.2409 44 1 7.0331 1.5285 -3.5399 45 1 6.8476 -0.6122 -5.1666 46 1 8.1262 0.4719 -5.7650 47 1 9.9669 -4.5379 -8.2611 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699439846.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:29 Heat of formation + Delta-G solvation = 62.086702 kcal Electronic energy + Delta-G solvation = -27485.604342 eV Core-core repulsion = 23639.120982 eV Total energy + Delta-G solvation = -3846.483361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.46289 -39.70954 -38.09734 -35.24987 -33.09711 -32.64422 -32.39966 -31.55261 -30.97778 -28.62733 -28.30588 -27.02234 -25.45726 -25.00384 -23.49486 -21.55933 -21.00752 -20.21988 -19.83272 -18.19785 -17.77838 -16.58667 -16.35048 -16.15228 -15.67838 -15.47830 -14.89578 -14.78008 -14.55491 -14.44961 -14.01579 -13.69246 -13.56496 -13.29302 -13.13235 -13.10505 -12.77696 -12.56750 -12.54523 -12.36965 -12.07362 -11.96122 -11.86376 -11.71047 -11.44345 -11.36808 -11.05407 -10.98397 -10.88983 -10.72546 -10.33833 -10.29256 -9.76982 -9.68826 -9.26493 -9.04780 -8.78563 -8.41583 -8.17911 -6.45257 -6.18801 -3.88385 1.33857 2.36900 2.53951 3.10622 3.21419 3.23278 3.30122 3.35204 3.37586 3.79359 3.80114 4.23247 4.25570 4.45573 4.68121 4.82548 4.86039 4.91668 4.99857 5.15142 5.16177 5.17601 5.23188 5.25907 5.30437 5.34985 5.43529 5.47983 5.50846 5.65260 5.67911 5.75063 5.90650 5.94287 5.97172 5.98673 6.14187 6.16447 6.19380 6.25823 6.69670 6.78390 6.83564 6.84489 7.62662 7.80693 7.85152 8.38366 8.74030 9.26573 10.88682 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.002629 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.254426 B =10648.683637 C =12555.422300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.277 3.723 3 N -0.541 5.541 4 C 0.232 3.768 5 C 0.175 3.825 6 H 0.067 0.933 7 C -0.144 4.144 8 N -0.524 5.524 9 C 0.014 3.986 10 C 0.045 3.955 11 C 0.149 3.851 12 H 0.098 0.902 13 C -0.162 4.162 14 N -0.732 5.732 15 C 0.533 3.467 16 O -0.515 6.515 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.534 4.534 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 N -0.276 5.276 28 N -0.485 5.485 29 H 0.440 0.560 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.058 0.942 38 H 0.027 0.973 39 H 0.095 0.905 40 H 0.042 0.958 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.053 0.947 44 H 0.395 0.605 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.263 13.921 18.362 28.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.001 4.001 3 N -0.271 5.271 4 C -0.051 4.051 5 C 0.065 3.935 6 H 0.085 0.915 7 C -0.202 4.202 8 N -0.248 5.248 9 C -0.135 4.135 10 C -0.083 4.083 11 C 0.044 3.956 12 H 0.116 0.884 13 C -0.221 4.221 14 N -0.388 5.388 15 C 0.319 3.681 16 O -0.389 6.389 17 C -0.305 4.305 18 S 0.168 5.832 19 C -0.682 4.682 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.206 1.206 27 N -0.104 5.104 28 N -0.203 5.203 29 H 0.286 0.714 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.113 0.887 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.230 0.770 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.017 12.171 19.456 27.426 hybrid contribution -2.476 0.976 -2.372 3.565 sum -17.492 13.147 17.085 27.762 Atomic orbital electron populations 1.20384 0.83714 1.05045 1.04479 1.24363 0.96583 0.82975 0.96213 1.70325 1.01303 1.29676 1.25822 1.23884 0.92499 0.90284 0.98458 1.19812 0.86129 0.93044 0.94554 0.91484 1.21914 1.00729 1.03691 0.93870 1.61897 1.06588 1.49437 1.06923 1.22812 1.00361 1.00331 0.89954 1.22623 0.90450 0.93400 1.01864 1.20883 0.92611 0.99312 0.82798 0.88388 1.22159 0.98472 0.99492 1.02007 1.46378 1.44612 1.33319 1.14525 1.20220 0.80758 0.79303 0.87835 1.90693 1.31735 1.49869 1.66608 1.23544 1.05491 1.06312 0.95106 1.85401 1.52377 1.30990 1.14451 1.22913 1.27813 1.18701 0.98789 0.90976 1.24990 0.94835 0.94811 0.99008 1.70028 1.27306 1.16359 1.36604 0.86129 0.78728 0.78134 0.82569 1.19652 1.20581 1.20601 1.78267 0.95411 1.12181 1.24560 1.48177 1.04683 1.10130 1.57340 0.71398 0.89062 0.88423 0.89810 0.90916 0.91074 0.91858 0.89105 0.92325 0.95413 0.88696 0.93935 0.91818 0.91394 0.92753 0.76986 0.89524 0.89428 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 10.51 36.01 0.38 0.08 16 2 C 0.28 2.41 8.24 -155.69 -1.28 1.13 16 3 N -0.54 -6.22 11.19 -8.16 -0.09 -6.31 16 4 C 0.23 2.82 5.10 -156.85 -0.80 2.02 16 5 C 0.18 1.83 2.62 -68.87 -0.18 1.65 16 6 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 7 C -0.14 -1.24 9.00 37.16 0.33 -0.91 16 8 N -0.52 -5.92 4.56 -236.28 -1.08 -7.00 16 9 C 0.01 0.16 8.15 60.07 0.49 0.65 16 10 C 0.04 0.42 4.61 -3.82 -0.02 0.40 16 11 C 0.15 1.82 2.84 -67.93 -0.19 1.63 16 12 H 0.10 1.48 7.55 -51.93 -0.39 1.09 16 13 C -0.16 -1.77 9.49 37.16 0.35 -1.42 16 14 N -0.73 -10.20 3.02 -53.81 -0.16 -10.36 16 15 C 0.53 10.21 7.67 -10.98 -0.08 10.13 16 16 O -0.52 -11.96 15.51 5.56 0.09 -11.88 16 17 C -0.15 -3.19 6.16 36.01 0.22 -2.97 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.53 -15.44 9.50 30.94 0.29 -15.15 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.51 13.22 55.49 0.73 -25.77 16 23 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 27 N -0.28 -3.57 12.64 32.42 0.41 -3.16 16 28 N -0.48 -4.48 7.45 32.62 0.24 -4.24 16 29 H 0.44 2.60 8.96 -182.33 -1.63 0.97 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.48 6.08 -51.93 -0.32 0.16 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.09 1.22 5.47 -51.93 -0.28 0.94 16 37 H 0.06 0.78 6.33 -51.93 -0.33 0.45 16 38 H 0.03 0.28 7.70 -51.93 -0.40 -0.12 16 39 H 0.09 0.73 5.60 -51.93 -0.29 0.44 16 40 H 0.04 0.35 7.82 -51.93 -0.41 -0.05 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.39 4.57 6.68 -40.82 -0.27 4.30 16 45 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 46 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 47 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 LS Contribution 396.29 15.07 5.97 5.97 Total: -1.00 -38.14 396.29 -10.22 -48.37 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -8.52 Total: 2.31 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -0.58 Total: -0.75 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.06 Total: -56.84 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.14 -10.22 -48.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699439846.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.453 kcal (2) G-P(sol) polarization free energy of solvation -38.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds