Wall clock time and date at job start Sat Apr 11 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30838 * 125.95941 * 2 1 4 4 C 1.33239 * 109.82373 * 180.12725 * 3 2 1 5 5 C 1.50700 * 125.52490 * 179.85888 * 4 3 2 6 6 H 1.09005 * 109.46915 * 344.71448 * 5 4 3 7 7 C 1.52997 * 109.47306 * 104.71227 * 5 4 3 8 8 N 1.46898 * 109.47266 * 224.71536 * 5 4 3 9 9 C 1.46904 * 111.00108 * 56.04487 * 8 5 4 10 10 C 1.46900 * 111.00042 * 179.97438 * 8 5 4 11 11 C 1.53008 * 109.46816 * 162.93789 * 10 8 5 12 12 H 1.08992 * 109.47099 * 301.39237 * 11 10 8 13 13 C 1.53007 * 109.46811 * 181.40021 * 11 10 8 14 14 N 1.46490 * 109.47211 * 61.40216 * 11 10 8 15 15 C 1.34780 * 119.99853 * 205.95685 * 14 11 10 16 16 O 1.21279 * 120.00117 * 359.97438 * 15 14 11 17 17 C 1.50702 * 120.00084 * 179.97438 * 15 14 11 18 18 S 1.80993 * 109.47101 * 180.02562 * 17 15 14 19 19 C 1.76203 * 100.00072 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00183 * 359.97438 * 19 18 17 21 21 C 1.38800 * 120.00079 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00045 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00082 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46832 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47011 * 120.00100 * 23 21 19 26 26 H 1.48500 * 109.47101 * 240.00173 * 23 21 19 27 27 N 1.30717 * 108.95012 * 359.59083 * 4 3 2 28 28 N 1.34423 * 125.96341 * 179.67492 * 2 1 3 29 29 H 0.97009 * 126.82073 * 0.02562 * 28 2 1 30 30 H 1.09000 * 109.46953 * 270.30122 * 1 2 3 31 31 H 1.09005 * 109.46831 * 30.30299 * 1 2 3 32 32 H 1.08998 * 109.47370 * 150.29730 * 1 2 3 33 33 H 1.09005 * 109.46953 * 60.00244 * 7 5 4 34 34 H 1.09005 * 109.47542 * 179.97438 * 7 5 4 35 35 H 1.08998 * 109.47456 * 299.99777 * 7 5 4 36 36 H 1.09000 * 109.47206 * 197.16902 * 9 8 5 37 37 H 1.08998 * 109.46880 * 317.16330 * 9 8 5 38 38 H 1.08998 * 109.47016 * 77.16429 * 9 8 5 39 39 H 1.08997 * 109.47148 * 42.93888 * 10 8 5 40 40 H 1.09001 * 109.47342 * 282.93248 * 10 8 5 41 41 H 1.08999 * 109.47199 * 59.99646 * 13 11 10 42 42 H 1.08991 * 109.46888 * 180.02562 * 13 11 10 43 43 H 1.09004 * 109.46998 * 299.99633 * 13 11 10 44 44 H 0.97000 * 120.00522 * 25.94661 * 14 11 10 45 45 H 1.09000 * 109.47249 * 299.99977 * 17 15 14 46 46 H 1.08998 * 109.47155 * 59.99938 * 17 15 14 47 47 H 0.96996 * 120.00286 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0028 5 6 4.7372 1.6236 -0.0067 6 1 4.4065 2.6262 -0.2779 7 6 5.3680 1.6541 1.3869 8 7 5.7294 1.1544 -0.9831 9 6 5.1321 1.0226 -2.3188 10 6 6.8981 2.0438 -1.0149 11 6 8.0660 1.3271 -1.6958 12 1 8.2961 0.4105 -1.1527 13 6 9.2935 2.2405 -1.6978 14 7 7.6996 0.9984 -3.0756 15 6 8.2886 -0.0409 -3.6998 16 8 9.1221 -0.7036 -3.1194 17 6 7.9114 -0.3794 -5.1190 18 16 8.8674 -1.8134 -5.6717 19 6 8.2448 -1.9827 -7.3114 20 1 7.4938 -1.2983 -7.6772 21 6 8.7196 -2.9958 -8.1329 22 7 9.6354 -3.8297 -7.6872 23 14 8.0591 -3.1757 -9.8708 24 1 7.0456 -2.1209 -10.1269 25 1 9.1745 -3.0359 -10.8412 26 1 7.4325 -4.5131 -10.0262 27 7 3.6194 -0.6168 0.0042 28 7 2.2964 -1.0880 0.0062 29 1 2.0093 -2.0146 0.0111 30 1 -0.3633 0.0054 1.0277 31 1 -0.3633 0.8873 -0.5186 32 1 -0.3634 -0.8926 -0.5092 33 1 5.6986 0.6515 1.6580 34 1 6.2232 2.3299 1.3839 35 1 4.6318 2.0023 2.1114 36 1 5.7730 0.4006 -2.9436 37 1 4.1489 0.5601 -2.2331 38 1 5.0313 2.0094 -2.7706 39 1 7.1796 2.3104 0.0037 40 1 6.6519 2.9476 -1.5723 41 1 9.5660 2.4851 -0.6712 42 1 10.1252 1.7301 -2.1832 43 1 9.0634 3.1571 -2.2409 44 1 7.0331 1.5285 -3.5399 45 1 6.8476 -0.6122 -5.1666 46 1 8.1262 0.4719 -5.7650 47 1 9.9669 -4.5379 -8.2611 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699439846.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:28 Heat of formation + Delta-G solvation = 33.103173 kcal Electronic energy + Delta-G solvation = -27486.861162 eV Core-core repulsion = 23639.120982 eV Total energy + Delta-G solvation = -3847.740181 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.20778 -40.98199 -39.18605 -36.37793 -34.59633 -33.90931 -33.34481 -32.79729 -31.73322 -30.09936 -28.93615 -27.86154 -27.66997 -25.82401 -24.38558 -22.48870 -21.85483 -21.55106 -20.64887 -19.82493 -18.91147 -17.92571 -17.42395 -17.21069 -16.89333 -16.57730 -16.47824 -16.08998 -15.91766 -15.54116 -15.05660 -14.75207 -14.59347 -14.45771 -14.15754 -13.91307 -13.74576 -13.66563 -13.44306 -13.21478 -13.16220 -13.10108 -12.92324 -12.82275 -12.73988 -12.61199 -12.57037 -12.41862 -12.13105 -11.84334 -11.70364 -11.16798 -11.10243 -11.09076 -10.86375 -10.45813 -10.27577 -9.98498 -9.28934 -8.67084 -8.35562 -6.13438 0.61769 1.26552 1.40117 1.46387 1.57716 1.67558 1.73908 1.77211 2.25628 2.33780 2.63272 2.98328 3.08381 3.32070 3.62811 3.78962 3.86637 4.04143 4.08086 4.16614 4.23196 4.25733 4.35110 4.41429 4.44008 4.47783 4.62483 4.67134 4.68554 4.68648 4.77833 4.83949 4.95554 4.98079 5.04077 5.14301 5.24531 5.26514 5.33662 5.38464 5.40703 5.58925 5.93674 6.04446 6.19030 6.20517 6.52222 7.05505 7.09812 7.30315 8.74028 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.002629 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.254426 B =10648.683637 C =12555.422300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.283 3.717 3 N -0.570 5.570 4 C 0.225 3.775 5 C 0.176 3.824 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.542 5.542 9 C 0.021 3.979 10 C 0.053 3.947 11 C 0.148 3.852 12 H 0.064 0.936 13 C -0.155 4.155 14 N -0.706 5.706 15 C 0.535 3.465 16 O -0.564 6.564 17 C -0.129 4.129 18 S -0.150 6.150 19 C -0.545 4.545 20 H 0.081 0.919 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.274 1.274 27 N -0.323 5.323 28 N -0.483 5.483 29 H 0.452 0.548 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.040 0.960 38 H 0.050 0.950 39 H 0.119 0.881 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.033 0.967 43 H 0.075 0.925 44 H 0.410 0.590 45 H 0.102 0.898 46 H 0.108 0.892 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.643 16.400 18.190 31.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.005 3.995 3 N -0.301 5.301 4 C -0.058 4.058 5 C 0.066 3.934 6 H 0.096 0.904 7 C -0.195 4.195 8 N -0.267 5.267 9 C -0.127 4.127 10 C -0.075 4.075 11 C 0.043 3.957 12 H 0.083 0.917 13 C -0.214 4.214 14 N -0.361 5.361 15 C 0.321 3.679 16 O -0.442 6.442 17 C -0.281 4.281 18 S 0.078 5.922 19 C -0.693 4.693 20 H 0.099 0.901 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.199 1.199 27 N -0.152 5.152 28 N -0.203 5.203 29 H 0.300 0.700 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.137 0.863 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.052 0.948 43 H 0.093 0.907 44 H 0.248 0.752 45 H 0.120 0.880 46 H 0.126 0.874 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.443 14.687 19.307 29.879 hybrid contribution -1.839 0.253 -2.192 2.872 sum -19.282 14.941 17.115 29.798 Atomic orbital electron populations 1.20626 0.80238 1.06369 1.06052 1.25243 0.98222 0.82132 0.93861 1.70344 1.01355 1.30964 1.27395 1.24230 0.93328 0.90306 0.97954 1.19911 0.85596 0.93002 0.94940 0.90440 1.21877 1.01584 1.03054 0.93003 1.61806 1.07407 1.50796 1.06733 1.22654 0.98872 1.00873 0.90327 1.22617 0.88443 0.93192 1.03214 1.21039 0.94845 0.98683 0.81133 0.91724 1.22092 0.96294 0.99331 1.03694 1.46168 1.43403 1.31433 1.15140 1.19960 0.80594 0.80171 0.87224 1.90681 1.34160 1.51936 1.67403 1.23380 1.04775 1.03427 0.96493 1.85584 1.55156 1.35791 1.15711 1.23224 1.28039 1.19213 0.98808 0.90083 1.26147 0.94881 0.94152 1.04076 1.70192 1.28836 1.17162 1.38614 0.84893 0.78346 0.78561 0.76056 1.18065 1.19797 1.19904 1.78161 0.97647 1.13015 1.26392 1.48123 1.03823 1.11055 1.57284 0.70026 0.87165 0.88043 0.87481 0.92937 0.88761 0.91269 0.91181 0.94129 0.93207 0.86326 0.91416 0.89195 0.94767 0.90651 0.75166 0.87984 0.87374 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.51 71.24 0.75 0.36 16 2 C 0.28 4.61 8.24 138.23 1.14 5.75 16 3 N -0.57 -12.60 11.19 -179.72 -2.01 -14.62 16 4 C 0.23 5.36 5.10 138.63 0.71 6.07 16 5 C 0.18 3.40 2.62 44.17 0.12 3.52 16 6 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 7 C -0.14 -2.15 9.00 71.98 0.65 -1.50 16 8 N -0.54 -11.52 4.56 -901.45 -4.11 -15.63 16 9 C 0.02 0.48 8.15 127.69 1.04 1.52 16 10 C 0.05 0.85 4.61 86.31 0.40 1.24 16 11 C 0.15 3.44 2.84 45.00 0.13 3.57 16 12 H 0.06 1.99 7.55 -2.39 -0.02 1.98 16 13 C -0.16 -3.10 9.49 71.98 0.68 -2.42 16 14 N -0.71 -19.00 3.02 -442.53 -1.34 -20.34 16 15 C 0.53 20.78 7.67 87.66 0.67 21.45 16 16 O -0.56 -27.35 15.51 -3.02 -0.05 -27.39 16 17 C -0.13 -5.39 6.16 71.24 0.44 -4.95 16 18 S -0.15 -8.57 20.57 -56.49 -1.16 -9.74 16 19 C -0.54 -31.85 9.50 67.95 0.65 -31.21 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.70 5.49 84.86 0.47 1.16 16 22 N -0.91 -57.01 13.22 21.65 0.29 -56.72 16 23 Si 1.00 44.36 29.55 68.60 2.03 46.39 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 N -0.32 -8.48 12.64 -51.33 -0.65 -9.12 16 28 N -0.48 -8.78 7.45 -50.71 -0.38 -9.16 16 29 H 0.45 5.20 8.96 -213.09 -1.91 3.29 16 30 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.10 0.52 8.14 -2.38 -0.02 0.51 16 32 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.05 1.04 8.14 -2.38 -0.02 1.03 16 34 H 0.09 0.99 6.08 -2.38 -0.01 0.97 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.85 5.47 -2.39 -0.01 1.83 16 37 H 0.04 1.07 6.33 -2.39 -0.02 1.05 16 38 H 0.05 0.87 7.70 -2.39 -0.02 0.86 16 39 H 0.12 1.39 5.60 -2.39 -0.01 1.38 16 40 H 0.07 0.81 7.82 -2.39 -0.02 0.79 16 41 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 44 H 0.41 8.61 6.68 -92.71 -0.62 7.99 16 45 H 0.10 3.92 8.14 -2.40 -0.02 3.90 16 46 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 47 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -87.84 396.29 -1.07 -88.92 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -1.53 Total: 22.84 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 7.83 Total: 4.57 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -8.20 Total: -125.59 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.05 Total: -27.39 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.74 kcal Total: -87.84 -1.07 -88.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699439846.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.021 kcal (2) G-P(sol) polarization free energy of solvation -87.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds