Wall clock time and date at job start Sat Apr 11 2020 06:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.30712 * 125.52347 * 299.69131 * 4 2 1 6 6 N 1.40447 * 106.79115 * 179.86008 * 5 4 2 7 7 H 0.96998 * 126.82161 * 180.16483 * 6 5 4 8 8 C 1.34430 * 106.35370 * 0.39838 * 6 5 4 9 9 C 1.50693 * 125.96034 * 179.77926 * 8 6 5 10 10 N 1.46898 * 109.47273 * 94.97778 * 9 8 6 11 11 C 1.46908 * 111.00006 * 293.95419 * 10 9 8 12 12 C 1.46901 * 111.00338 * 169.99754 * 10 9 8 13 13 C 1.52992 * 109.47293 * 189.99747 * 12 10 9 14 14 N 1.46504 * 109.47369 * 180.02562 * 13 12 10 15 15 C 1.34775 * 120.00430 * 180.02562 * 14 13 12 16 16 O 1.21283 * 119.99433 * 359.97438 * 15 14 13 17 17 C 1.50691 * 120.00114 * 179.97438 * 15 14 13 18 18 S 1.81005 * 109.47106 * 179.97438 * 17 15 14 19 19 C 1.76203 * 100.00026 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00068 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00054 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99931 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99936 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47357 * 90.00679 * 23 21 19 25 25 H 1.48507 * 109.46828 * 210.00458 * 23 21 19 26 26 H 1.48501 * 109.47141 * 329.99881 * 23 21 19 27 27 N 1.30830 * 108.07545 * 359.75741 * 8 6 5 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.09001 * 109.46934 * 214.97504 * 9 8 6 36 36 H 1.09001 * 109.47572 * 334.97778 * 9 8 6 37 37 H 1.09004 * 109.46961 * 59.99724 * 11 10 9 38 38 H 1.08997 * 109.47014 * 180.02562 * 11 10 9 39 39 H 1.09004 * 109.46799 * 299.99921 * 11 10 9 40 40 H 1.08996 * 109.47019 * 310.00624 * 12 10 9 41 41 H 1.09005 * 109.46571 * 69.99956 * 12 10 9 42 42 H 1.09003 * 109.47463 * 300.00536 * 13 12 10 43 43 H 1.09001 * 109.46997 * 60.00057 * 13 12 10 44 44 H 0.97003 * 119.99742 * 359.97438 * 14 13 12 45 45 H 1.08997 * 109.47482 * 299.99766 * 17 15 14 46 46 H 1.09001 * 109.47234 * 59.99786 * 17 15 14 47 47 H 0.96994 * 119.99539 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7887 -0.3561 2.4648 6 7 2.4401 -1.2871 3.2903 7 1 2.4480 -1.2985 4.2602 8 6 3.0546 -2.1562 2.4693 9 6 3.8888 -3.3369 2.8946 10 7 3.0528 -4.5445 2.9171 11 6 2.0216 -4.4516 3.9594 12 6 3.8735 -5.7499 3.0946 13 6 3.0110 -6.9925 2.8652 14 7 3.8294 -8.1946 3.0427 15 6 3.2776 -9.4145 2.8883 16 8 2.1033 -9.5170 2.6027 17 6 4.1196 -10.6509 3.0703 18 16 3.0991 -12.1211 2.7991 19 6 4.3007 -13.3815 3.0683 20 1 5.3169 -13.1143 3.3179 21 6 3.9412 -14.7177 2.9595 22 7 2.7027 -15.0433 2.6548 23 14 5.2148 -16.0538 3.2457 24 1 5.2233 -16.4303 4.6821 25 1 4.8769 -17.2439 2.4241 26 1 6.5568 -15.5497 2.8580 27 7 2.8016 -1.7984 1.2366 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 4.7084 -3.4755 2.1895 36 1 4.2931 -3.1563 3.8906 37 1 1.3845 -3.5890 3.7642 38 1 1.4173 -5.3587 3.9545 39 1 2.4984 -4.3384 4.9331 40 1 4.6941 -5.7395 2.3772 41 1 4.2765 -5.7692 4.1072 42 1 2.1905 -7.0028 3.5826 43 1 2.6080 -6.9732 1.8526 44 1 4.7687 -8.1126 3.2707 45 1 4.9403 -10.6405 2.3531 46 1 4.5223 -10.6704 4.0830 47 1 2.4516 -15.9771 2.5785 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713446455.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:01 Heat of formation + Delta-G solvation = 44.963045 kcal Electronic energy + Delta-G solvation = -25826.724782 eV Core-core repulsion = 21979.498884 eV Total energy + Delta-G solvation = -3847.225898 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.59888 -39.33918 -38.18217 -36.10141 -34.55715 -32.61359 -32.43142 -31.81745 -30.17512 -28.23998 -28.17250 -27.55227 -25.52583 -24.79485 -24.08909 -21.77128 -21.13631 -20.39141 -19.98640 -18.38581 -17.84558 -16.87206 -16.35649 -16.19151 -15.87692 -15.49553 -15.28044 -15.07290 -14.87590 -14.79914 -14.47157 -13.98212 -13.85062 -13.56999 -13.44334 -13.12336 -12.94382 -12.58150 -12.55792 -12.40073 -12.20560 -12.06791 -11.91478 -11.82281 -11.65922 -11.36912 -11.35532 -11.06633 -11.02788 -10.76761 -10.42279 -10.34596 -9.92688 -9.82093 -9.43746 -9.07418 -8.97379 -8.90547 -8.23854 -6.50344 -6.21898 -3.92592 1.12798 2.15753 2.44328 2.93938 3.08989 3.21988 3.23894 3.29519 3.41262 3.51060 3.86180 4.08498 4.20078 4.23294 4.42534 4.55811 4.67083 4.73060 4.78090 4.84240 4.95906 4.99855 5.03560 5.13277 5.14777 5.16776 5.24881 5.41922 5.44367 5.45632 5.55141 5.61004 5.70216 5.81945 5.84584 5.85998 5.88204 5.89282 6.09433 6.12718 6.32518 6.35149 6.59467 6.61344 7.59131 7.67018 7.73936 8.34828 8.59784 9.23392 10.85545 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031385 B = 0.001444 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.917749 B =19385.774004 C =19698.860363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.002 4.002 3 C -0.143 4.143 4 C 0.234 3.766 5 N -0.310 5.310 6 N -0.483 5.483 7 H 0.438 0.562 8 C 0.294 3.706 9 C 0.133 3.867 10 N -0.528 5.528 11 C 0.012 3.988 12 C 0.048 3.952 13 C 0.124 3.876 14 N -0.740 5.740 15 C 0.533 3.467 16 O -0.515 6.515 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 N -0.518 5.518 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.116 0.884 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.032 0.968 40 H 0.088 0.912 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.397 0.603 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.250 32.766 1.282 32.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 C -0.201 4.201 4 C -0.049 4.049 5 N -0.138 5.138 6 N -0.202 5.202 7 H 0.283 0.717 8 C 0.015 3.985 9 C 0.003 3.997 10 N -0.253 5.253 11 C -0.136 4.136 12 C -0.080 4.080 13 C -0.001 4.001 14 N -0.395 5.395 15 C 0.319 3.681 16 O -0.389 6.389 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 N -0.246 5.246 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.051 0.949 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.231 0.769 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.584 32.875 0.161 32.881 hybrid contribution 3.093 -0.801 2.252 3.909 sum 3.677 32.074 2.413 32.374 Atomic orbital electron populations 1.21828 0.93150 1.02563 1.02632 1.19552 0.96208 0.95135 0.91458 1.21823 1.01255 0.94318 1.02681 1.24280 0.94798 0.92167 0.93608 1.77956 1.20097 1.13478 1.02315 1.48087 1.39850 1.21899 1.10333 0.71696 1.24045 0.94917 0.93298 0.86244 1.20548 0.93318 0.84485 1.01351 1.61684 1.14358 1.00840 1.48451 1.22625 0.95311 1.03901 0.91796 1.22276 0.95932 0.88799 1.00969 1.21176 0.93491 0.82359 1.03040 1.45898 1.13745 1.05383 1.74469 1.20293 0.88201 0.83778 0.75874 1.90715 1.16450 1.86353 1.45400 1.23525 1.03525 0.98428 1.04884 1.85424 1.14061 0.92039 1.91837 1.22870 0.97555 0.92603 1.55415 0.90922 1.24990 0.95997 0.97980 0.94585 1.70019 1.16886 1.18460 1.44892 0.86169 0.80704 0.80292 0.78332 1.20292 1.20737 1.19697 1.70393 1.19497 1.14484 1.20221 0.91398 0.91994 0.92276 0.88297 0.91981 0.92515 0.91397 0.86578 0.92100 0.91739 0.89691 0.94927 0.89332 0.93584 0.91603 0.90452 0.76914 0.89141 0.89245 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.18 37.16 0.34 -0.63 16 2 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16 3 C -0.14 -0.87 9.17 37.15 0.34 -0.53 16 4 C 0.23 2.39 6.65 -156.85 -1.04 1.34 16 5 N -0.31 -3.08 12.80 32.42 0.41 -2.67 16 6 N -0.48 -3.64 7.01 32.62 0.23 -3.41 16 7 H 0.44 1.89 8.96 -182.34 -1.63 0.25 16 8 C 0.29 2.49 6.74 -155.70 -1.05 1.44 16 9 C 0.13 0.79 5.59 -4.98 -0.03 0.76 16 10 N -0.53 -4.00 4.75 -244.37 -1.16 -5.16 16 11 C 0.01 0.08 9.17 60.07 0.55 0.63 16 12 C 0.05 0.34 5.07 -3.83 -0.02 0.32 16 13 C 0.12 1.37 5.61 -4.04 -0.02 1.34 16 14 N -0.74 -9.22 5.56 -60.30 -0.33 -9.56 16 15 C 0.53 9.73 7.85 -10.99 -0.09 9.64 16 16 O -0.52 -11.69 15.86 5.55 0.09 -11.60 16 17 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 20 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.10 13.22 55.49 0.73 -25.36 16 23 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 N -0.52 -5.71 11.19 -8.16 -0.09 -5.80 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.12 0.63 7.93 -51.93 -0.41 0.22 16 36 H 0.06 0.21 8.12 -51.93 -0.42 -0.21 16 37 H 0.06 0.48 6.94 -51.93 -0.36 0.12 16 38 H 0.08 0.69 6.30 -51.93 -0.33 0.37 16 39 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.09 0.54 7.93 -51.93 -0.41 0.13 16 41 H 0.05 0.26 8.12 -51.93 -0.42 -0.16 16 42 H 0.07 0.79 6.47 -51.93 -0.34 0.45 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.40 3.61 8.47 -40.82 -0.35 3.26 16 45 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 46 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 47 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 406.32 15.07 6.12 6.12 Total: -1.00 -37.38 406.32 -11.01 -48.39 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -8.87 Total: -1.67 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -0.91 Total: -1.69 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.21 Total: -51.96 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.38 -11.01 -48.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713446455.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.350 kcal (2) G-P(sol) polarization free energy of solvation -37.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds