Wall clock time and date at job start Sat Apr 11 2020 06:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30840 * 125.95802 * 2 1 4 4 C 1.33236 * 109.82383 * 179.97438 * 3 2 1 5 5 C 1.50706 * 125.52085 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.47009 * 15.00270 * 5 4 3 7 7 C 1.53000 * 109.47383 * 255.00082 * 5 4 3 8 8 N 1.46908 * 109.46857 * 135.00264 * 5 4 3 9 9 C 1.46894 * 110.99837 * 205.00258 * 8 5 4 10 10 H 1.09002 * 109.47104 * 324.99694 * 9 8 5 11 11 C 1.52997 * 109.47515 * 84.99962 * 9 8 5 12 12 C 1.52999 * 109.46927 * 205.00322 * 9 8 5 13 13 C 1.52999 * 109.47451 * 64.99399 * 12 9 8 14 14 N 1.46500 * 109.47120 * 180.02562 * 13 12 9 15 15 C 1.34777 * 120.00097 * 180.02562 * 14 13 12 16 16 O 1.21279 * 119.99903 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00178 * 179.97438 * 15 14 13 18 18 S 1.80995 * 109.47230 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00178 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00117 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00090 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99970 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99942 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47184 * 89.99766 * 23 21 19 25 25 H 1.48497 * 109.47073 * 209.99708 * 23 21 19 26 26 H 1.48499 * 109.47300 * 329.99843 * 23 21 19 27 27 N 1.30704 * 108.95294 * 0.26400 * 4 3 2 28 28 N 1.34429 * 125.96331 * 179.97438 * 2 1 3 29 29 H 0.96997 * 126.81993 * 0.02774 * 28 2 1 30 30 H 1.09007 * 109.46917 * 90.00561 * 1 2 3 31 31 H 1.09004 * 109.47415 * 209.99990 * 1 2 3 32 32 H 1.08997 * 109.47882 * 330.00454 * 1 2 3 33 33 H 1.09003 * 109.46758 * 300.00787 * 7 5 4 34 34 H 1.08997 * 109.46833 * 59.99916 * 7 5 4 35 35 H 1.08994 * 109.47425 * 180.02562 * 7 5 4 36 36 H 1.00898 * 110.99816 * 81.04339 * 8 5 4 37 37 H 1.09002 * 109.47153 * 59.99762 * 11 9 8 38 38 H 1.09001 * 109.46832 * 299.99953 * 11 9 8 39 39 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 40 40 H 1.08998 * 109.47565 * 185.00149 * 12 9 8 41 41 H 1.09000 * 109.46738 * 304.99630 * 12 9 8 42 42 H 1.08996 * 109.47443 * 300.00108 * 13 12 9 43 43 H 1.09000 * 109.46961 * 60.00367 * 13 12 9 44 44 H 0.97004 * 120.00316 * 359.97438 * 14 13 12 45 45 H 1.09000 * 109.47343 * 299.99792 * 17 15 14 46 46 H 1.09000 * 109.46969 * 59.99899 * 17 15 14 47 47 H 0.97003 * 119.99822 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0591 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7371 1.6238 0.0002 6 1 4.4062 2.6279 0.2654 7 6 5.3691 1.6465 -1.3930 8 7 5.7286 1.1601 0.9801 9 6 6.5668 2.2722 1.4474 10 1 6.7323 2.9717 0.6280 11 6 5.8627 2.9928 2.5989 12 6 7.9119 1.7279 1.9328 13 6 8.6706 1.1170 0.7530 14 7 9.9582 0.5954 1.2179 15 6 10.8020 0.0085 0.3460 16 8 10.4955 -0.0874 -0.8235 17 6 12.1268 -0.5276 0.8242 18 16 13.0243 -1.2504 -0.5715 19 6 14.4894 -1.7830 0.2497 20 1 14.6049 -1.6164 1.3105 21 6 15.4958 -2.4157 -0.4670 22 7 15.3553 -2.6183 -1.7600 23 14 17.0493 -2.9796 0.4035 24 1 16.8656 -4.3695 0.8933 25 1 18.1916 -2.9358 -0.5444 26 1 17.3259 -2.0820 1.5538 27 7 3.6194 -0.6166 -0.0048 28 7 2.2965 -1.0881 0.0005 29 1 2.0094 -2.0146 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3635 0.8900 0.5137 33 1 5.6999 0.6423 -1.6582 34 1 4.6335 1.9905 -2.1200 35 1 6.2242 2.3223 -1.3932 36 1 6.2939 0.4166 0.5984 37 1 5.6972 2.2933 3.4183 38 1 4.9045 3.3805 2.2530 39 1 6.4850 3.8177 2.9459 40 1 8.4992 2.5400 2.3612 41 1 7.7422 0.9632 2.6908 42 1 8.0833 0.3048 0.3246 43 1 8.8403 1.8817 -0.0050 44 1 10.2039 0.6730 2.1531 45 1 12.7140 0.2845 1.2528 46 1 11.9571 -1.2925 1.5819 47 1 16.0585 -3.0608 -2.2607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714458035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:24 Heat of formation + Delta-G solvation = 33.444607 kcal Electronic energy + Delta-G solvation = -26299.202104 eV Core-core repulsion = 22451.476729 eV Total energy + Delta-G solvation = -3847.725375 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.42747 -39.32808 -38.29307 -35.28232 -33.75983 -32.67218 -32.41672 -32.10495 -30.18885 -28.52314 -28.28782 -28.09879 -25.47934 -24.59423 -23.21762 -21.56750 -20.79947 -20.36165 -20.10343 -18.21753 -17.80843 -16.44051 -16.41290 -16.13971 -15.92235 -15.52292 -15.22250 -14.79291 -14.58964 -14.45312 -13.90945 -13.84679 -13.65906 -13.59265 -13.30567 -13.21510 -13.02416 -12.61992 -12.47610 -12.42559 -12.13738 -12.10514 -11.83504 -11.67907 -11.45929 -11.31660 -11.06834 -11.04363 -11.01075 -10.74278 -10.36944 -10.30436 -9.80272 -9.74662 -9.38057 -9.05914 -8.90782 -8.71719 -8.21941 -6.48455 -6.20430 -3.90824 1.31235 2.33368 2.55716 3.05087 3.12360 3.23296 3.28902 3.33254 3.42377 3.72858 3.98552 4.21711 4.26228 4.43185 4.57485 4.61619 4.79998 4.85800 4.87461 4.88940 5.13569 5.14656 5.14879 5.16698 5.25723 5.31460 5.35454 5.43769 5.45587 5.60398 5.64619 5.72792 5.83457 5.85286 5.92543 5.95117 5.96007 6.05239 6.15996 6.16392 6.62923 6.67057 6.76540 7.09846 7.60793 7.73004 7.82767 8.36466 8.63663 9.24868 10.87001 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019726 B = 0.001728 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.073322 B =16195.885890 C =16966.620709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.278 3.722 3 N -0.539 5.539 4 C 0.246 3.754 5 C 0.179 3.821 6 H 0.105 0.895 7 C -0.180 4.180 8 N -0.679 5.679 9 C 0.089 3.911 10 H 0.053 0.947 11 C -0.140 4.140 12 C -0.134 4.134 13 C 0.118 3.882 14 N -0.738 5.738 15 C 0.531 3.469 16 O -0.518 6.518 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 N -0.296 5.296 28 N -0.485 5.485 29 H 0.439 0.561 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.353 0.647 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.399 0.601 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.851 9.580 8.136 32.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.001 4.001 3 N -0.269 5.269 4 C -0.038 4.038 5 C 0.066 3.934 6 H 0.123 0.877 7 C -0.240 4.240 8 N -0.313 5.313 9 C -0.020 4.020 10 H 0.071 0.929 11 C -0.198 4.198 12 C -0.173 4.173 13 C -0.007 4.007 14 N -0.393 5.393 15 C 0.317 3.683 16 O -0.392 6.392 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 N -0.124 5.124 28 N -0.204 5.204 29 H 0.284 0.716 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.175 0.825 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.232 0.768 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -30.122 9.364 6.537 32.214 hybrid contribution 1.596 -0.864 1.576 2.404 sum -28.526 8.500 8.113 30.851 Atomic orbital electron populations 1.20381 0.83751 1.04967 1.04507 1.24358 0.96554 0.82990 0.96157 1.70307 1.01369 1.29590 1.25649 1.24020 0.92708 0.90032 0.97050 1.19685 0.86963 0.95245 0.91508 0.87681 1.22492 1.01498 1.03449 0.96528 1.60441 1.19087 1.11252 1.40558 1.21454 0.91096 0.92123 0.97374 0.92910 1.21809 1.00193 0.99667 0.98119 1.22000 0.95117 1.01722 0.98422 1.21315 0.84411 0.98359 0.96593 1.45966 1.18699 1.62355 1.12234 1.20317 0.85257 0.76869 0.85867 1.90700 1.75906 1.55469 1.17149 1.23530 0.96300 1.03808 1.06770 1.85394 1.16542 1.73935 1.07534 1.22875 1.03584 1.44737 0.97198 0.90925 1.24992 0.98483 0.95197 0.94909 1.70021 1.33849 1.39976 1.06450 0.86166 0.81177 0.79030 0.79114 1.20280 1.20755 1.19700 1.78061 0.96068 1.12441 1.25860 1.48052 1.04551 1.10001 1.57751 0.71557 0.89047 0.89907 0.88400 0.91473 0.91529 0.91083 0.82527 0.91959 0.92572 0.92329 0.90195 0.90140 0.91849 0.91757 0.76765 0.89230 0.89221 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.23 10.51 36.01 0.38 0.14 16 2 C 0.28 2.23 8.24 -155.69 -1.28 0.94 16 3 N -0.54 -5.93 11.19 -8.16 -0.09 -6.02 16 4 C 0.25 2.82 6.99 -156.86 -1.10 1.73 16 5 C 0.18 1.73 2.94 -68.86 -0.20 1.53 16 6 H 0.11 0.95 7.11 -51.93 -0.37 0.58 16 7 C -0.18 -1.66 9.13 37.16 0.34 -1.32 16 8 N -0.68 -6.48 6.03 -100.95 -0.61 -7.08 16 9 C 0.09 0.71 2.46 -67.72 -0.17 0.55 16 10 H 0.05 0.41 7.11 -51.93 -0.37 0.04 16 11 C -0.14 -1.02 9.40 37.16 0.35 -0.67 16 12 C -0.13 -1.09 4.92 -26.73 -0.13 -1.22 16 13 C 0.12 1.34 5.50 -4.04 -0.02 1.32 16 14 N -0.74 -9.83 5.56 -60.30 -0.33 -10.17 16 15 C 0.53 10.03 7.85 -10.99 -0.09 9.95 16 16 O -0.52 -11.93 15.86 5.56 0.09 -11.84 16 17 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.54 -15.40 9.50 30.94 0.29 -15.11 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.36 13.22 55.49 0.73 -25.62 16 23 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 N -0.30 -3.51 12.78 32.42 0.41 -3.09 16 28 N -0.49 -4.02 7.45 32.62 0.24 -3.78 16 29 H 0.44 2.09 8.96 -182.34 -1.63 0.45 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 32 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.60 7.43 -51.93 -0.39 0.21 16 36 H 0.35 3.73 6.21 -39.29 -0.24 3.48 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.42 7.43 -51.93 -0.39 0.04 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.80 6.43 -51.93 -0.33 0.46 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.40 4.11 8.47 -40.82 -0.35 3.76 16 45 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 46 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 47 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 405.57 15.07 6.11 6.11 Total: -1.00 -38.08 405.57 -10.86 -48.95 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.68 Total: 2.96 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -1.50 Total: -3.06 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.36 Total: -55.76 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -38.08 -10.86 -48.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714458035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.392 kcal (2) G-P(sol) polarization free energy of solvation -38.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds