Wall clock time and date at job start Sat Apr 11 2020 06:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30825 * 125.95918 * 2 1 4 4 C 1.33245 * 109.82813 * 179.97438 * 3 2 1 5 5 C 1.50699 * 125.52879 * 179.74300 * 4 3 2 6 6 H 1.09000 * 109.46869 * 14.99211 * 5 4 3 7 7 C 1.53000 * 109.46674 * 254.99647 * 5 4 3 8 8 N 1.46894 * 109.47408 * 134.99733 * 5 4 3 9 9 C 1.46907 * 110.99678 * 273.76988 * 8 5 4 10 10 H 1.08993 * 109.47416 * 33.87642 * 9 8 5 11 11 C 1.53000 * 109.47112 * 273.87465 * 9 8 5 12 12 C 1.53003 * 109.46997 * 153.87897 * 9 8 5 13 13 C 1.52997 * 109.46962 * 295.00157 * 12 9 8 14 14 N 1.46502 * 109.47167 * 180.02562 * 13 12 9 15 15 C 1.34774 * 120.00029 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00285 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00151 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.47407 * 179.97438 * 17 15 14 19 19 C 1.76203 * 100.00060 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99892 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99857 * 179.97438 * 19 18 17 22 22 N 1.31623 * 120.00132 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99823 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46914 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47143 * 119.99853 * 23 21 19 26 26 H 1.48501 * 109.46986 * 240.00228 * 23 21 19 27 27 N 1.30716 * 108.94649 * 359.97438 * 4 3 2 28 28 N 1.34425 * 125.95931 * 179.97438 * 2 1 3 29 29 H 0.96999 * 126.82568 * 0.02562 * 28 2 1 30 30 H 1.09000 * 109.47141 * 89.99458 * 1 2 3 31 31 H 1.09000 * 109.46996 * 209.99662 * 1 2 3 32 32 H 1.08995 * 109.47160 * 329.99686 * 1 2 3 33 33 H 1.09005 * 109.47111 * 295.28698 * 7 5 4 34 34 H 1.08997 * 109.47585 * 55.29245 * 7 5 4 35 35 H 1.08998 * 109.47107 * 175.29095 * 7 5 4 36 36 H 1.00897 * 111.00420 * 37.71897 * 8 5 4 37 37 H 1.08997 * 109.46956 * 55.77776 * 11 9 8 38 38 H 1.09000 * 109.47422 * 175.77791 * 11 9 8 39 39 H 1.08998 * 109.47449 * 295.78385 * 11 9 8 40 40 H 1.08995 * 109.47166 * 54.99783 * 12 9 8 41 41 H 1.09002 * 109.47198 * 174.99913 * 12 9 8 42 42 H 1.09009 * 109.46744 * 299.99826 * 13 12 9 43 43 H 1.08999 * 109.47800 * 60.00107 * 13 12 9 44 44 H 0.96995 * 120.00140 * 359.97438 * 14 13 12 45 45 H 1.09002 * 109.47546 * 300.00125 * 17 15 14 46 46 H 1.09002 * 109.47122 * 59.99838 * 17 15 14 47 47 H 0.97001 * 120.00427 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5553 0.6887 0.0006 5 6 4.7373 1.6236 -0.0048 6 1 4.4066 2.6287 0.2568 7 6 5.3676 1.6406 -1.3988 8 7 5.7297 1.1638 0.9758 9 6 5.4324 1.6932 2.3135 10 1 4.3527 1.7678 2.4431 11 6 6.0612 3.0797 2.4646 12 6 6.0095 0.7532 3.3738 13 6 5.2920 -0.5963 3.3039 14 7 5.8442 -1.4962 4.3195 15 6 5.3617 -2.7485 4.4443 16 8 4.4701 -3.1302 3.7162 17 6 5.9300 -3.6743 5.4887 18 16 5.0801 -5.2703 5.4070 19 6 5.9192 -6.1301 6.6959 20 1 6.7006 -5.6366 7.2547 21 6 5.5753 -7.4415 6.9938 22 7 4.6219 -8.0425 6.3138 23 14 6.4644 -8.3528 8.3607 24 1 7.4858 -7.4615 8.9670 25 1 5.4860 -8.7639 9.3995 26 1 7.1286 -9.5576 7.8018 27 7 3.6195 -0.6168 0.0015 28 7 2.2964 -1.0881 0.0005 29 1 2.0093 -2.0146 0.0006 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 5.7730 0.6546 -1.6263 34 1 4.6094 1.9010 -2.1373 35 1 6.1696 2.3782 -1.4259 36 1 5.7846 0.1564 0.9897 37 1 5.7069 3.7286 1.6637 38 1 5.7783 3.5041 3.4280 39 1 7.1465 2.9945 2.4098 40 1 7.0741 0.6085 3.1904 41 1 5.8671 1.1896 4.3625 42 1 4.2272 -0.4516 3.4873 43 1 5.4343 -1.0328 2.3153 44 1 6.5570 -1.1908 4.9022 45 1 6.9946 -3.8194 5.3051 46 1 5.7881 -3.2377 6.4773 47 1 4.3817 -8.9590 6.5217 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714458037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:31 Heat of formation + Delta-G solvation = 32.222280 kcal Electronic energy + Delta-G solvation = -27106.811396 eV Core-core repulsion = 23259.033017 eV Total energy + Delta-G solvation = -3847.778379 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.39265 -39.29911 -38.18099 -35.27249 -33.70149 -32.58804 -32.44182 -32.02116 -30.18842 -28.72751 -28.22837 -28.05055 -25.50221 -24.23490 -23.25865 -21.40410 -20.87121 -20.26238 -20.12608 -18.18991 -17.83188 -16.42492 -16.36573 -16.13007 -15.94259 -15.56436 -15.15979 -14.81678 -14.50425 -14.25713 -14.02972 -13.83494 -13.77512 -13.43892 -13.21111 -13.15432 -12.79905 -12.65390 -12.50558 -12.33517 -12.12218 -12.04737 -11.78799 -11.61040 -11.33993 -11.27205 -11.09070 -11.07006 -11.03005 -10.75652 -10.28201 -10.24197 -9.81516 -9.69785 -9.38966 -9.09060 -8.96603 -8.80475 -8.24553 -6.51167 -6.23191 -3.93439 1.38396 2.41927 2.61403 3.03394 3.11166 3.20539 3.27347 3.32404 3.63515 3.72091 3.79148 4.19297 4.35814 4.52272 4.58163 4.66937 4.88538 4.90437 5.01285 5.05560 5.12190 5.15263 5.21904 5.24588 5.33063 5.39778 5.43187 5.44816 5.57102 5.63510 5.68109 5.72684 5.84656 5.91107 5.93097 5.95958 6.01551 6.06024 6.13830 6.20812 6.62287 6.68337 6.85536 7.09379 7.58784 7.72720 7.87180 8.34331 8.62642 9.22413 10.84359 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014108 B = 0.002301 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.254884 B =12166.334560 C =13568.783917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.281 3.719 3 N -0.539 5.539 4 C 0.191 3.809 5 C 0.180 3.820 6 H 0.103 0.897 7 C -0.133 4.133 8 N -0.671 5.671 9 C 0.084 3.916 10 H 0.049 0.951 11 C -0.137 4.137 12 C -0.136 4.136 13 C 0.121 3.879 14 N -0.737 5.737 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.153 4.153 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 N -0.300 5.300 28 N -0.473 5.473 29 H 0.444 0.556 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.355 0.645 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.398 0.602 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.374 23.278 -12.575 26.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.002 3.998 3 N -0.269 5.269 4 C -0.094 4.094 5 C 0.066 3.934 6 H 0.121 0.879 7 C -0.192 4.192 8 N -0.305 5.305 9 C -0.026 4.026 10 H 0.067 0.933 11 C -0.195 4.195 12 C -0.174 4.174 13 C -0.003 4.003 14 N -0.392 5.392 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.303 4.303 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.504 5.504 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.205 1.205 27 N -0.130 5.130 28 N -0.191 5.191 29 H 0.290 0.710 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.177 0.823 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.232 0.768 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.934 22.938 -13.959 27.011 hybrid contribution 0.667 -1.361 2.268 2.728 sum -2.267 21.577 -11.691 24.645 Atomic orbital electron populations 1.20405 0.83651 1.05215 1.04487 1.24410 0.96670 0.82956 0.95756 1.70359 1.01316 1.29577 1.25686 1.25379 0.94256 0.91073 0.98662 1.20075 0.83472 0.95176 0.94633 0.87922 1.21729 1.00739 1.03204 0.93509 1.60884 1.46637 1.17235 1.05786 1.21505 0.98296 0.95099 0.87682 0.93314 1.21784 1.01589 0.94961 1.01193 1.22020 1.01351 0.94319 0.99685 1.21262 0.97568 0.89061 0.92425 1.45967 1.41239 1.13550 1.38431 1.20315 0.82275 0.81396 0.84341 1.90686 1.29396 1.74953 1.44249 1.23527 1.04684 1.02467 0.99660 1.85363 1.48845 1.01329 1.47999 1.22910 1.23883 1.00644 1.20770 0.90872 1.24999 0.95198 0.96469 0.96976 1.70025 1.28208 1.12858 1.39273 0.86109 0.79265 0.79342 0.80737 1.19599 1.20565 1.20549 1.77953 0.97192 1.11956 1.25860 1.48001 1.04088 1.10343 1.56653 0.71011 0.89024 0.89622 0.88397 0.91962 0.92257 0.90796 0.82284 0.92420 0.92495 0.91806 0.90019 0.90342 0.92538 0.91560 0.76799 0.89189 0.89275 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.51 36.01 0.38 -0.06 16 2 C 0.28 2.85 8.24 -155.70 -1.28 1.57 16 3 N -0.54 -6.56 11.19 -8.16 -0.09 -6.65 16 4 C 0.19 2.32 6.67 -156.85 -1.05 1.28 16 5 C 0.18 1.77 2.94 -68.87 -0.20 1.57 16 6 H 0.10 0.95 7.18 -51.93 -0.37 0.58 16 7 C -0.13 -1.14 9.50 37.16 0.35 -0.79 16 8 N -0.67 -6.60 6.06 -100.95 -0.61 -7.21 16 9 C 0.08 0.77 2.44 -67.71 -0.17 0.60 16 10 H 0.05 0.52 7.67 -51.93 -0.40 0.12 16 11 C -0.14 -1.01 9.42 37.16 0.35 -0.66 16 12 C -0.14 -1.25 4.91 -26.73 -0.13 -1.38 16 13 C 0.12 1.58 5.51 -4.04 -0.02 1.55 16 14 N -0.74 -10.44 5.56 -60.29 -0.33 -10.77 16 15 C 0.53 10.29 7.85 -10.99 -0.09 10.21 16 16 O -0.52 -12.13 15.86 5.55 0.09 -12.04 16 17 C -0.15 -3.15 6.16 36.00 0.22 -2.93 16 18 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 19 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 20 H 0.07 1.99 7.80 -52.49 -0.41 1.59 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.27 13.22 55.49 0.73 -25.53 16 23 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 N -0.30 -3.99 12.20 32.42 0.40 -3.59 16 28 N -0.47 -5.24 7.45 32.62 0.24 -4.99 16 29 H 0.44 3.92 8.96 -182.33 -1.63 2.29 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.36 4.10 5.73 -39.29 -0.23 3.88 16 37 H 0.06 0.41 7.49 -51.93 -0.39 0.02 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 43 H 0.07 0.97 6.43 -51.93 -0.33 0.64 16 44 H 0.40 4.36 8.47 -40.82 -0.35 4.02 16 45 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 46 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 47 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 406.01 15.07 6.12 6.12 Total: -1.00 -37.05 406.01 -10.87 -47.92 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -8.74 Total: 6.25 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -1.43 Total: -2.06 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: 0.33 Total: -58.75 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.05 -10.87 -47.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714458037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.141 kcal (2) G-P(sol) polarization free energy of solvation -37.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds