Wall clock time and date at job start Sat Apr 11 2020 06:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30825 * 125.95918 * 2 1 4 4 C 1.33245 * 109.82813 * 179.97438 * 3 2 1 5 5 C 1.50699 * 125.52879 * 179.74300 * 4 3 2 6 6 H 1.09000 * 109.46869 * 14.99211 * 5 4 3 7 7 C 1.53000 * 109.46674 * 254.99647 * 5 4 3 8 8 N 1.46894 * 109.47408 * 134.99733 * 5 4 3 9 9 C 1.46907 * 110.99678 * 273.76988 * 8 5 4 10 10 H 1.08993 * 109.47416 * 33.87642 * 9 8 5 11 11 C 1.53000 * 109.47112 * 273.87465 * 9 8 5 12 12 C 1.53003 * 109.46997 * 153.87897 * 9 8 5 13 13 C 1.52997 * 109.46962 * 295.00157 * 12 9 8 14 14 N 1.46502 * 109.47167 * 180.02562 * 13 12 9 15 15 C 1.34774 * 120.00029 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00285 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00151 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.47407 * 179.97438 * 17 15 14 19 19 C 1.76203 * 100.00060 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99892 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99857 * 179.97438 * 19 18 17 22 22 N 1.31623 * 120.00132 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99823 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46914 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47143 * 119.99853 * 23 21 19 26 26 H 1.48501 * 109.46986 * 240.00228 * 23 21 19 27 27 N 1.30716 * 108.94649 * 359.97438 * 4 3 2 28 28 N 1.34425 * 125.95931 * 179.97438 * 2 1 3 29 29 H 0.96999 * 126.82568 * 0.02562 * 28 2 1 30 30 H 1.09000 * 109.47141 * 89.99458 * 1 2 3 31 31 H 1.09000 * 109.46996 * 209.99662 * 1 2 3 32 32 H 1.08995 * 109.47160 * 329.99686 * 1 2 3 33 33 H 1.09005 * 109.47111 * 295.28698 * 7 5 4 34 34 H 1.08997 * 109.47585 * 55.29245 * 7 5 4 35 35 H 1.08998 * 109.47107 * 175.29095 * 7 5 4 36 36 H 1.00897 * 111.00420 * 37.71897 * 8 5 4 37 37 H 1.08997 * 109.46956 * 55.77776 * 11 9 8 38 38 H 1.09000 * 109.47422 * 175.77791 * 11 9 8 39 39 H 1.08998 * 109.47449 * 295.78385 * 11 9 8 40 40 H 1.08995 * 109.47166 * 54.99783 * 12 9 8 41 41 H 1.09002 * 109.47198 * 174.99913 * 12 9 8 42 42 H 1.09009 * 109.46744 * 299.99826 * 13 12 9 43 43 H 1.08999 * 109.47800 * 60.00107 * 13 12 9 44 44 H 0.96995 * 120.00140 * 359.97438 * 14 13 12 45 45 H 1.09002 * 109.47546 * 300.00125 * 17 15 14 46 46 H 1.09002 * 109.47122 * 59.99838 * 17 15 14 47 47 H 0.97001 * 120.00427 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5553 0.6887 0.0006 5 6 4.7373 1.6236 -0.0048 6 1 4.4066 2.6287 0.2568 7 6 5.3676 1.6406 -1.3988 8 7 5.7297 1.1638 0.9758 9 6 5.4324 1.6932 2.3135 10 1 4.3527 1.7678 2.4431 11 6 6.0612 3.0797 2.4646 12 6 6.0095 0.7532 3.3738 13 6 5.2920 -0.5963 3.3039 14 7 5.8442 -1.4962 4.3195 15 6 5.3617 -2.7485 4.4443 16 8 4.4701 -3.1302 3.7162 17 6 5.9300 -3.6743 5.4887 18 16 5.0801 -5.2703 5.4070 19 6 5.9192 -6.1301 6.6959 20 1 6.7006 -5.6366 7.2547 21 6 5.5753 -7.4415 6.9938 22 7 4.6219 -8.0425 6.3138 23 14 6.4644 -8.3528 8.3607 24 1 7.4858 -7.4615 8.9670 25 1 5.4860 -8.7639 9.3995 26 1 7.1286 -9.5576 7.8018 27 7 3.6195 -0.6168 0.0015 28 7 2.2964 -1.0881 0.0005 29 1 2.0093 -2.0146 0.0006 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 5.7730 0.6546 -1.6263 34 1 4.6094 1.9010 -2.1373 35 1 6.1696 2.3782 -1.4259 36 1 5.7846 0.1564 0.9897 37 1 5.7069 3.7286 1.6637 38 1 5.7783 3.5041 3.4280 39 1 7.1465 2.9945 2.4098 40 1 7.0741 0.6085 3.1904 41 1 5.8671 1.1896 4.3625 42 1 4.2272 -0.4516 3.4873 43 1 5.4343 -1.0328 2.3153 44 1 6.5570 -1.1908 4.9022 45 1 6.9946 -3.8194 5.3051 46 1 5.7881 -3.2377 6.4773 47 1 4.3817 -8.9590 6.5217 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714458037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:30 Heat of formation + Delta-G solvation = 4.164232 kcal Electronic energy + Delta-G solvation = -27108.028084 eV Core-core repulsion = 23259.033017 eV Total energy + Delta-G solvation = -3848.995067 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.23912 -40.72720 -39.08414 -36.38319 -34.72882 -34.60315 -33.39861 -32.84817 -31.54053 -29.46268 -29.26829 -28.85898 -27.67657 -25.05624 -24.25402 -22.23887 -21.98683 -21.27590 -21.05917 -19.84903 -19.02138 -17.86596 -17.42657 -17.22065 -16.90278 -16.84122 -16.66493 -16.40170 -15.79901 -15.33573 -15.04688 -14.94256 -14.80936 -14.57110 -14.40576 -13.97204 -13.76028 -13.61181 -13.41872 -13.37401 -13.18578 -13.02424 -12.93179 -12.77217 -12.64057 -12.57343 -12.39623 -12.22225 -12.07435 -11.86771 -11.71390 -11.17967 -11.16190 -11.12646 -10.99422 -10.55432 -10.30925 -10.22717 -9.68011 -8.69811 -8.37152 -6.15447 0.54991 1.24221 1.40071 1.44843 1.54935 1.56571 1.64050 1.76468 2.21255 2.25622 2.91606 2.97199 3.02051 3.28841 3.62746 3.71398 3.79233 3.86502 3.95962 4.04987 4.19923 4.26298 4.31383 4.43468 4.46269 4.47329 4.61300 4.62836 4.65461 4.75489 4.90410 4.90934 4.97751 5.00690 5.09102 5.13001 5.17131 5.25314 5.34974 5.39383 5.40078 5.45647 5.92729 6.09698 6.17938 6.22800 6.45077 7.01684 7.04304 7.18471 8.72426 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014108 B = 0.002301 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.254884 B =12166.334560 C =13568.783917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.282 3.718 3 N -0.565 5.565 4 C 0.189 3.811 5 C 0.179 3.821 6 H 0.109 0.891 7 C -0.126 4.126 8 N -0.667 5.667 9 C 0.085 3.915 10 H 0.030 0.970 11 C -0.131 4.131 12 C -0.123 4.123 13 C 0.128 3.872 14 N -0.710 5.710 15 C 0.530 3.470 16 O -0.566 6.566 17 C -0.128 4.128 18 S -0.152 6.152 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.256 1.256 25 H -0.273 1.273 26 H -0.274 1.274 27 N -0.338 5.338 28 N -0.480 5.480 29 H 0.450 0.550 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.344 0.656 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.034 0.966 43 H 0.049 0.951 44 H 0.419 0.581 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.910 25.048 -11.307 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.005 3.995 3 N -0.295 5.295 4 C -0.096 4.096 5 C 0.066 3.934 6 H 0.127 0.873 7 C -0.184 4.184 8 N -0.299 5.299 9 C -0.025 4.025 10 H 0.049 0.951 11 C -0.188 4.188 12 C -0.161 4.161 13 C 0.004 3.996 14 N -0.365 5.365 15 C 0.316 3.684 16 O -0.444 6.444 17 C -0.279 4.279 18 S 0.075 5.925 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.199 1.199 27 N -0.168 5.168 28 N -0.198 5.198 29 H 0.297 0.703 30 H 0.131 0.869 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.165 0.835 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.256 0.744 45 H 0.129 0.871 46 H 0.129 0.871 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.440 24.763 -12.681 27.859 hybrid contribution 0.165 -1.802 1.815 2.563 sum -1.276 22.961 -10.866 25.434 Atomic orbital electron populations 1.20630 0.80465 1.06239 1.06130 1.25268 0.98284 0.82211 0.93769 1.70387 1.01579 1.30527 1.27053 1.25801 0.94975 0.91051 0.97779 1.20222 0.82972 0.94901 0.95318 0.87277 1.21678 1.01080 1.02923 0.92745 1.60984 1.46385 1.16366 1.06199 1.21555 0.97439 0.96204 0.87276 0.95144 1.21736 1.01678 0.93431 1.02000 1.21984 1.01437 0.91810 1.00866 1.21267 0.96855 0.90549 0.90953 1.45703 1.40707 1.11764 1.38287 1.20165 0.81866 0.82684 0.83656 1.90678 1.31643 1.76162 1.45961 1.23363 1.04677 0.98571 1.01332 1.85562 1.51381 1.06666 1.48878 1.23231 1.24049 1.01228 1.20758 0.89888 1.26147 0.95923 0.97437 0.99722 1.70185 1.29974 1.13398 1.41259 0.84887 0.78107 0.77835 0.77001 1.18004 1.19869 1.19911 1.77880 0.98662 1.12757 1.27496 1.48030 1.03769 1.11012 1.57034 0.70327 0.86909 0.88090 0.87778 0.93261 0.92174 0.89106 0.83524 0.92166 0.91302 0.91247 0.88598 0.88346 0.94729 0.93302 0.74395 0.87112 0.87117 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.51 71.24 0.75 -0.02 16 2 C 0.28 5.80 8.24 138.23 1.14 6.94 16 3 N -0.56 -13.92 11.19 -179.72 -2.01 -15.93 16 4 C 0.19 4.72 6.67 138.63 0.92 5.64 16 5 C 0.18 3.50 2.94 44.17 0.13 3.63 16 6 H 0.11 1.96 7.18 -2.39 -0.02 1.95 16 7 C -0.13 -2.11 9.50 71.98 0.68 -1.42 16 8 N -0.67 -12.73 6.06 -473.31 -2.87 -15.60 16 9 C 0.09 1.44 2.44 44.91 0.11 1.55 16 10 H 0.03 0.64 7.67 -2.39 -0.02 0.62 16 11 C -0.13 -1.59 9.42 71.98 0.68 -0.91 16 12 C -0.12 -2.00 4.91 30.59 0.15 -1.85 16 13 C 0.13 3.26 5.51 86.38 0.48 3.74 16 14 N -0.71 -19.05 5.56 -463.06 -2.57 -21.62 16 15 C 0.53 20.42 7.85 87.66 0.69 21.11 16 16 O -0.57 -27.30 15.86 -3.04 -0.05 -27.35 16 17 C -0.13 -5.18 6.16 71.23 0.44 -4.74 16 18 S -0.15 -8.53 20.57 -56.49 -1.16 -9.70 16 19 C -0.54 -31.27 9.50 67.95 0.65 -30.63 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.71 5.49 84.86 0.47 1.17 16 22 N -0.91 -56.15 13.22 21.65 0.29 -55.87 16 23 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 24 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 27 N -0.34 -9.43 12.20 -51.33 -0.63 -10.06 16 28 N -0.48 -11.14 7.45 -50.71 -0.38 -11.52 16 29 H 0.45 8.56 8.96 -213.10 -1.91 6.65 16 30 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.34 8.04 5.73 -89.70 -0.51 7.53 16 37 H 0.06 0.72 7.49 -2.39 -0.02 0.70 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.05 1.46 6.43 -2.39 -0.02 1.45 16 44 H 0.42 7.91 8.47 -92.71 -0.79 7.12 16 45 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 46 H 0.11 3.99 8.14 -2.39 -0.02 3.98 16 47 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -83.41 406.01 -2.28 -85.69 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: -2.20 Total: 32.02 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 7.28 Total: 4.22 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -8.17 Total: -130.61 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.05 Total: -27.35 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.70 kcal Total: -83.41 -2.28 -85.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714458037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.858 kcal (2) G-P(sol) polarization free energy of solvation -83.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds