Wall clock time and date at job start Sat Apr 11 2020 06:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 120.00571 * 2 1 4 4 H 1.48498 * 109.47571 * 240.00574 * 3 2 1 5 5 H 1.48504 * 109.46801 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46883 * 120.00222 * 3 2 1 7 7 C 1.38958 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99701 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99670 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99582 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00050 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99802 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47190 * 179.97438 * 12 10 9 14 14 C 1.47962 * 111.00111 * 170.00490 * 13 12 10 15 15 C 1.53942 * 86.17650 * 222.41848 * 14 13 12 16 16 C 1.53005 * 113.73153 * 138.07964 * 15 14 13 17 17 N 1.46501 * 109.47290 * 174.99606 * 16 15 14 18 18 C 1.34770 * 120.00013 * 179.97438 * 17 16 15 19 19 O 1.21281 * 119.99965 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00148 * 180.02562 * 18 17 16 21 21 C 1.52995 * 109.47391 * 180.02562 * 20 18 17 22 22 O 1.42967 * 109.47161 * 175.00116 * 21 20 18 23 23 C 1.43095 * 113.77014 * 178.79211 * 22 21 20 24 24 C 1.53261 * 108.94358 * 302.02838 * 23 22 21 25 25 C 1.53259 * 108.84186 * 54.52606 * 24 23 22 26 26 O 1.42968 * 109.47265 * 294.99606 * 21 20 18 27 27 C 1.47958 * 110.99886 * 70.64381 * 13 12 10 28 28 H 0.97002 * 119.99503 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99697 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.46699 * 59.99938 * 12 10 9 31 31 H 1.09002 * 109.47310 * 300.00378 * 12 10 9 32 32 H 1.08991 * 113.76008 * 108.10219 * 14 13 12 33 33 H 1.09001 * 113.75888 * 336.73263 * 14 13 12 34 34 H 1.08994 * 113.73440 * 269.24981 * 15 14 13 35 35 H 1.09006 * 109.47165 * 54.99379 * 16 15 14 36 36 H 1.09008 * 109.47084 * 294.99877 * 16 15 14 37 37 H 0.96996 * 119.99559 * 0.02562 * 17 16 15 38 38 H 1.09006 * 109.47218 * 59.99878 * 20 18 17 39 39 H 1.09008 * 109.47128 * 300.00317 * 20 18 17 40 40 H 1.08998 * 109.47129 * 54.99933 * 21 20 18 41 41 H 1.08997 * 109.55621 * 61.86774 * 23 22 21 42 42 H 1.08999 * 109.55712 * 182.08124 * 23 22 21 43 43 H 1.08997 * 109.57207 * 174.33189 * 24 23 22 44 44 H 1.08998 * 109.57441 * 294.58821 * 24 23 22 45 45 H 1.08994 * 109.56239 * 65.31171 * 25 24 23 46 46 H 1.08999 * 109.55602 * 185.64189 * 25 24 23 47 47 H 1.09003 * 113.76316 * 23.26286 * 27 13 12 48 48 H 1.09003 * 113.76383 * 251.90052 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1020 1.6964 -1.2125 5 1 1.2833 2.7465 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8630 0.0000 13 7 2.1981 -5.9795 -0.0007 14 6 1.5088 -7.2666 0.2396 15 6 2.6861 -7.6050 1.1719 16 6 2.2632 -8.2832 2.4766 17 7 3.4555 -8.6699 3.2349 18 6 3.3259 -9.2871 4.4259 19 8 2.2221 -9.5228 4.8698 20 6 4.5524 -9.6843 5.2062 21 6 4.1294 -10.3626 6.5107 22 8 5.2887 -10.8431 7.1957 23 6 4.9993 -11.4729 8.4476 24 6 4.2608 -10.4758 9.3472 25 6 3.0296 -9.9524 8.5995 26 8 3.4441 -9.4192 7.3380 27 6 2.8916 -6.0851 1.3020 28 1 -0.4849 0.8401 0.0004 29 1 0.3533 -2.3906 0.0002 30 1 0.6166 -4.9208 -0.8897 31 1 0.6172 -4.9205 0.8903 32 1 1.4496 -7.9043 -0.6423 33 1 0.5547 -7.1639 0.7566 34 1 3.5072 -8.1194 0.6726 35 1 1.6730 -9.1712 2.2498 36 1 1.6647 -7.5907 3.0687 37 1 4.3383 -8.4810 2.8800 38 1 5.1424 -8.7962 5.4327 39 1 5.1510 -10.3770 4.6144 40 1 3.4668 -11.1987 6.2873 41 1 4.3710 -12.3475 8.2794 42 1 5.9298 -11.7786 8.9259 43 1 3.9466 -10.9745 10.2640 44 1 4.9225 -9.6449 9.5916 45 1 2.3266 -10.7694 8.4370 46 1 2.5515 -9.1689 9.1874 47 1 2.3420 -5.6368 2.1298 48 1 3.9372 -5.7789 1.2690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714964437.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:38 Heat of formation + Delta-G solvation = -130.325263 kcal Electronic energy + Delta-G solvation = -29157.826176 eV Core-core repulsion = 24827.953584 eV Total energy + Delta-G solvation = -4329.872592 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.61114 -40.14071 -39.27396 -37.70353 -36.01077 -34.90355 -33.88169 -33.60440 -31.46533 -31.10835 -30.20569 -27.32421 -26.36678 -25.96568 -24.98471 -23.91581 -22.40054 -21.56245 -20.76568 -19.53535 -19.18063 -18.04390 -17.83995 -17.11332 -17.01563 -16.35668 -16.22438 -16.12676 -15.54209 -15.31587 -15.13222 -15.11182 -14.79921 -14.58398 -14.29527 -13.72271 -13.67797 -13.55195 -13.36812 -13.32279 -12.99949 -12.48890 -12.35414 -12.05670 -11.93425 -11.71122 -11.51750 -11.50484 -11.48054 -11.30145 -11.03929 -10.63498 -10.59461 -10.43489 -10.40275 -10.20410 -10.07138 -9.98333 -9.48627 -9.24179 -8.64754 -8.21997 -7.95544 -6.40769 -3.81620 2.45220 2.66130 3.20713 3.26305 3.29179 3.30692 3.43478 3.89986 4.00167 4.21834 4.28547 4.30458 4.35931 4.41227 4.53471 4.65714 4.66897 4.82444 4.88506 4.95749 4.96199 5.07317 5.13538 5.24005 5.28382 5.31118 5.37828 5.41066 5.43178 5.56286 5.60875 5.62885 5.74765 5.76855 5.85224 6.05646 6.19327 6.27259 6.34277 6.44251 6.63285 6.80226 7.20726 7.28462 7.55680 8.02129 8.06295 8.62232 9.18604 9.54998 10.06711 10.76917 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015027 B = 0.001775 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.857980 B =15772.972854 C =16865.983301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.580 6.580 12 C 0.010 3.990 13 N -0.454 5.454 14 C 0.008 3.992 15 C -0.134 4.134 16 C 0.129 3.871 17 N -0.726 5.726 18 C 0.519 3.481 19 O -0.532 6.532 20 C -0.130 4.130 21 C 0.264 3.736 22 O -0.396 6.396 23 C 0.059 3.941 24 C -0.194 4.194 25 C 0.058 3.942 26 O -0.377 6.377 27 C 0.026 3.974 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.404 0.596 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.054 0.946 46 H 0.100 0.900 47 H 0.067 0.933 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.397 -24.881 13.911 29.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.229 3.771 11 O -0.464 6.464 12 C -0.122 4.122 13 N -0.176 5.176 14 C -0.121 4.121 15 C -0.153 4.153 16 C 0.006 3.994 17 N -0.379 5.379 18 C 0.305 3.695 19 O -0.408 6.408 20 C -0.170 4.170 21 C 0.169 3.831 22 O -0.317 6.317 23 C -0.017 4.017 24 C -0.232 4.232 25 C -0.018 4.018 26 O -0.297 6.297 27 C -0.103 4.103 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.238 0.762 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.118 0.882 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.072 0.928 46 H 0.118 0.882 47 H 0.086 0.914 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.769 -24.533 13.474 28.578 hybrid contribution -0.619 0.768 0.769 1.251 sum 5.150 -23.765 14.243 28.181 Atomic orbital electron populations 1.69606 1.05930 1.28250 1.50532 1.25267 0.95643 0.99721 0.97328 0.85914 0.78758 0.80459 0.79060 1.19889 1.20975 1.19925 1.19647 0.93318 0.82235 1.47710 0.87997 1.41867 1.09179 1.04600 1.64443 1.19687 0.88370 0.84518 0.84548 1.90513 1.13641 1.87030 1.55222 1.22461 0.95188 0.92645 1.01905 1.68402 1.18383 0.99952 1.30866 1.23965 0.95837 0.93588 0.98744 1.23348 0.99997 0.97032 0.94948 1.21439 0.87295 0.99499 0.91207 1.45940 1.10426 1.60892 1.20609 1.20155 0.90539 0.77756 0.81055 1.90736 1.27395 1.54304 1.68377 1.21467 0.97646 1.04037 0.93828 1.22843 0.83005 0.89793 0.87472 1.88056 1.33202 1.76334 1.34098 1.22641 1.01161 0.94022 0.83871 1.22818 0.99328 1.01187 0.99904 1.22620 0.94911 0.99685 0.84615 1.88192 1.74545 1.38559 1.28439 1.23871 1.02325 0.92541 0.91522 0.91826 0.77492 0.89153 0.92792 0.89124 0.91125 0.87681 0.91184 0.91195 0.76205 0.86955 0.86549 0.91806 0.92759 0.88171 0.89673 0.89895 0.92750 0.88236 0.91447 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.75 13.05 55.50 0.72 -24.02 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.49 5.29 -10.96 -0.06 -14.55 16 10 C 0.44 10.61 7.59 -10.98 -0.08 10.52 16 11 O -0.58 -15.79 15.13 5.55 0.08 -15.71 16 12 C 0.01 0.18 5.30 -4.98 -0.03 0.15 16 13 N -0.45 -7.41 5.95 -239.74 -1.43 -8.83 16 14 C 0.01 0.10 7.54 -2.76 -0.02 0.08 16 15 C -0.13 -1.42 3.94 -89.68 -0.35 -1.78 16 16 C 0.13 1.32 5.53 -4.04 -0.02 1.30 16 17 N -0.73 -6.67 5.56 -60.29 -0.33 -7.00 16 18 C 0.52 5.66 7.71 -10.99 -0.08 5.58 16 19 O -0.53 -7.88 15.42 -8.85 -0.14 -8.01 16 20 C -0.13 -1.08 5.78 -27.89 -0.16 -1.25 16 21 C 0.26 2.63 2.80 37.16 0.10 2.74 16 22 O -0.40 -3.71 10.54 -59.03 -0.62 -4.33 16 23 C 0.06 0.39 6.96 37.29 0.26 0.65 16 24 C -0.19 -1.22 6.35 -26.46 -0.17 -1.38 16 25 C 0.06 0.49 6.96 37.29 0.26 0.75 16 26 O -0.38 -4.44 9.77 -64.76 -0.63 -5.07 16 27 C 0.03 0.39 6.31 -2.77 -0.02 0.37 16 28 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 30 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 31 H 0.05 0.88 7.69 -51.93 -0.40 0.48 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 34 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.84 7.84 -51.92 -0.41 0.43 16 37 H 0.40 2.73 8.47 -40.82 -0.35 2.38 16 38 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.12 0.65 8.14 -51.92 -0.42 0.23 16 40 H 0.06 0.64 7.96 -51.93 -0.41 0.23 16 41 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.07 1.05 7.53 -51.93 -0.39 0.65 16 48 H 0.09 1.54 8.09 -51.93 -0.42 1.12 16 LS Contribution 395.92 15.07 5.97 5.97 Total: -1.00 -35.77 395.92 -9.70 -45.47 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -7.68 Total: 10.22 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -0.56 Total: 9.64 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -1.09 Total: -54.41 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -1.31 Total: -33.12 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.77 -9.70 -45.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714964437.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.854 kcal (2) G-P(sol) polarization free energy of solvation -35.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds