Wall clock time and date at job start Sat Apr 11 2020 06:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 120.00571 * 2 1 4 4 H 1.48498 * 109.47571 * 240.00574 * 3 2 1 5 5 H 1.48504 * 109.46801 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46883 * 120.00222 * 3 2 1 7 7 C 1.38958 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99701 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99670 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99582 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00050 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99802 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47190 * 179.97438 * 12 10 9 14 14 C 1.47962 * 111.00111 * 170.00490 * 13 12 10 15 15 C 1.53942 * 86.17650 * 222.41848 * 14 13 12 16 16 C 1.53005 * 113.73153 * 138.07964 * 15 14 13 17 17 N 1.46501 * 109.47290 * 174.99606 * 16 15 14 18 18 C 1.34770 * 120.00013 * 179.97438 * 17 16 15 19 19 O 1.21281 * 119.99965 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00148 * 180.02562 * 18 17 16 21 21 C 1.52995 * 109.47391 * 180.02562 * 20 18 17 22 22 O 1.42967 * 109.47161 * 175.00116 * 21 20 18 23 23 C 1.43095 * 113.77014 * 178.79211 * 22 21 20 24 24 C 1.53261 * 108.94358 * 302.02838 * 23 22 21 25 25 C 1.53259 * 108.84186 * 54.52606 * 24 23 22 26 26 O 1.42968 * 109.47265 * 294.99606 * 21 20 18 27 27 C 1.47958 * 110.99886 * 70.64381 * 13 12 10 28 28 H 0.97002 * 119.99503 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99697 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.46699 * 59.99938 * 12 10 9 31 31 H 1.09002 * 109.47310 * 300.00378 * 12 10 9 32 32 H 1.08991 * 113.76008 * 108.10219 * 14 13 12 33 33 H 1.09001 * 113.75888 * 336.73263 * 14 13 12 34 34 H 1.08994 * 113.73440 * 269.24981 * 15 14 13 35 35 H 1.09006 * 109.47165 * 54.99379 * 16 15 14 36 36 H 1.09008 * 109.47084 * 294.99877 * 16 15 14 37 37 H 0.96996 * 119.99559 * 0.02562 * 17 16 15 38 38 H 1.09006 * 109.47218 * 59.99878 * 20 18 17 39 39 H 1.09008 * 109.47128 * 300.00317 * 20 18 17 40 40 H 1.08998 * 109.47129 * 54.99933 * 21 20 18 41 41 H 1.08997 * 109.55621 * 61.86774 * 23 22 21 42 42 H 1.08999 * 109.55712 * 182.08124 * 23 22 21 43 43 H 1.08997 * 109.57207 * 174.33189 * 24 23 22 44 44 H 1.08998 * 109.57441 * 294.58821 * 24 23 22 45 45 H 1.08994 * 109.56239 * 65.31171 * 25 24 23 46 46 H 1.08999 * 109.55602 * 185.64189 * 25 24 23 47 47 H 1.09003 * 113.76316 * 23.26286 * 27 13 12 48 48 H 1.09003 * 113.76383 * 251.90052 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1020 1.6964 -1.2125 5 1 1.2833 2.7465 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8630 0.0000 13 7 2.1981 -5.9795 -0.0007 14 6 1.5088 -7.2666 0.2396 15 6 2.6861 -7.6050 1.1719 16 6 2.2632 -8.2832 2.4766 17 7 3.4555 -8.6699 3.2349 18 6 3.3259 -9.2871 4.4259 19 8 2.2221 -9.5228 4.8698 20 6 4.5524 -9.6843 5.2062 21 6 4.1294 -10.3626 6.5107 22 8 5.2887 -10.8431 7.1957 23 6 4.9993 -11.4729 8.4476 24 6 4.2608 -10.4758 9.3472 25 6 3.0296 -9.9524 8.5995 26 8 3.4441 -9.4192 7.3380 27 6 2.8916 -6.0851 1.3020 28 1 -0.4849 0.8401 0.0004 29 1 0.3533 -2.3906 0.0002 30 1 0.6166 -4.9208 -0.8897 31 1 0.6172 -4.9205 0.8903 32 1 1.4496 -7.9043 -0.6423 33 1 0.5547 -7.1639 0.7566 34 1 3.5072 -8.1194 0.6726 35 1 1.6730 -9.1712 2.2498 36 1 1.6647 -7.5907 3.0687 37 1 4.3383 -8.4810 2.8800 38 1 5.1424 -8.7962 5.4327 39 1 5.1510 -10.3770 4.6144 40 1 3.4668 -11.1987 6.2873 41 1 4.3710 -12.3475 8.2794 42 1 5.9298 -11.7786 8.9259 43 1 3.9466 -10.9745 10.2640 44 1 4.9225 -9.6449 9.5916 45 1 2.3266 -10.7694 8.4370 46 1 2.5515 -9.1689 9.1874 47 1 2.3420 -5.6368 2.1298 48 1 3.9372 -5.7789 1.2690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714964437.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:37 Heat of formation + Delta-G solvation = -159.779388 kcal Electronic energy + Delta-G solvation = -29159.103403 eV Core-core repulsion = 24827.953584 eV Total energy + Delta-G solvation = -4331.149818 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.50218 -41.12546 -40.21491 -39.47059 -36.70533 -36.04311 -35.72251 -34.22632 -33.33291 -32.31010 -31.13222 -28.56818 -27.05764 -26.94753 -26.70011 -24.86912 -23.55773 -22.15368 -21.61453 -21.00670 -20.50301 -19.89904 -18.74286 -17.88636 -17.84129 -17.77053 -17.12040 -17.01271 -16.59603 -16.57494 -16.36483 -16.08816 -15.74619 -15.74139 -15.66468 -15.32643 -14.90973 -14.42564 -14.31578 -14.27172 -13.91598 -13.72553 -13.53888 -13.48933 -13.07111 -12.99385 -12.84907 -12.45578 -12.44201 -12.31222 -12.13865 -12.12286 -12.09038 -11.76781 -11.65123 -11.49564 -11.04025 -10.93173 -10.69028 -10.34108 -10.09750 -10.03244 -9.67704 -8.47897 -5.96896 1.38558 1.40201 1.51418 1.62266 1.93874 2.03329 2.27777 2.64632 2.76543 2.83154 3.18490 3.28009 3.47082 3.67405 3.71333 3.77217 3.77619 3.84748 4.08606 4.19091 4.21553 4.25813 4.31046 4.38933 4.42063 4.42615 4.50270 4.50814 4.52853 4.64841 4.71110 4.71967 4.81935 4.83600 4.87899 4.90943 5.09506 5.24837 5.38184 5.41553 5.47921 5.83160 5.89686 6.07655 6.14064 6.53234 6.58430 7.10848 7.23427 7.54099 8.09659 8.69304 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015027 B = 0.001775 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.857980 B =15772.972854 C =16865.983301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.575 5.575 10 C 0.439 3.561 11 O -0.618 6.618 12 C 0.022 3.978 13 N -0.481 5.481 14 C 0.014 3.986 15 C -0.103 4.103 16 C 0.136 3.864 17 N -0.717 5.717 18 C 0.518 3.482 19 O -0.575 6.575 20 C -0.125 4.125 21 C 0.261 3.739 22 O -0.407 6.407 23 C 0.049 3.951 24 C -0.187 4.187 25 C 0.047 3.953 26 O -0.409 6.409 27 C 0.017 3.983 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.417 0.583 38 H 0.118 0.882 39 H 0.147 0.853 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.120 0.880 43 H 0.110 0.890 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.103 0.897 47 H 0.055 0.945 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.665 -26.233 14.072 30.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.212 5.212 10 C 0.227 3.773 11 O -0.504 6.504 12 C -0.109 4.109 13 N -0.204 5.204 14 C -0.114 4.114 15 C -0.122 4.122 16 C 0.011 3.989 17 N -0.369 5.369 18 C 0.305 3.695 19 O -0.455 6.455 20 C -0.164 4.164 21 C 0.166 3.834 22 O -0.328 6.328 23 C -0.026 4.026 24 C -0.225 4.225 25 C -0.029 4.029 26 O -0.330 6.330 27 C -0.112 4.112 28 H 0.087 0.913 29 H 0.229 0.771 30 H 0.127 0.873 31 H 0.091 0.909 32 H 0.130 0.870 33 H 0.102 0.898 34 H 0.142 0.858 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.254 0.746 38 H 0.136 0.864 39 H 0.165 0.835 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.138 0.862 43 H 0.129 0.871 44 H 0.093 0.907 45 H 0.076 0.924 46 H 0.121 0.879 47 H 0.074 0.926 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.042 -25.902 13.623 29.883 hybrid contribution -0.698 1.134 0.742 1.524 sum 5.344 -24.768 14.365 29.127 Atomic orbital electron populations 1.69670 1.06841 1.29369 1.50242 1.26065 0.96578 1.02466 0.96257 0.84980 0.77762 0.76581 0.78959 1.19655 1.19426 1.19711 1.19627 0.92684 0.84022 1.50076 0.90329 1.41954 1.09290 1.04767 1.65195 1.20766 0.88311 0.85963 0.82282 1.90479 1.15642 1.87918 1.56342 1.22352 0.95008 0.89953 1.03610 1.68404 1.19227 1.01054 1.31741 1.24090 0.96360 0.91033 0.99937 1.23144 1.00146 0.93978 0.94972 1.21303 0.87562 0.99340 0.90650 1.45870 1.10915 1.60023 1.20141 1.20582 0.90688 0.77081 0.81163 1.90715 1.29152 1.56182 1.69436 1.21505 0.96619 1.04947 0.93330 1.22887 0.83089 0.89562 0.87872 1.88027 1.33008 1.76581 1.35228 1.22922 1.02491 0.94210 0.83014 1.22773 0.98109 1.01016 1.00573 1.22836 0.96106 1.00013 0.83965 1.88148 1.75039 1.39923 1.29847 1.23838 1.00716 0.95861 0.90742 0.91285 0.77071 0.87331 0.90905 0.86980 0.89841 0.85798 0.90205 0.93045 0.74622 0.86350 0.83482 0.92469 0.91705 0.86232 0.87124 0.90695 0.92439 0.87916 0.92650 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.37 13.05 21.67 0.28 -50.09 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 3 Si 0.99 43.50 29.55 68.60 2.03 45.52 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.33 -19.32 9.68 84.04 0.81 -18.51 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -30.16 5.29 -306.98 -1.62 -31.78 16 10 C 0.44 21.38 7.59 87.66 0.67 22.05 16 11 O -0.62 -34.64 15.13 -3.07 -0.05 -34.69 16 12 C 0.02 0.79 5.30 85.56 0.45 1.24 16 13 N -0.48 -15.15 5.95 -912.41 -5.43 -20.58 16 14 C 0.01 0.30 7.54 86.41 0.65 0.95 16 15 C -0.10 -1.99 3.94 -10.15 -0.04 -2.03 16 16 C 0.14 2.56 5.53 86.38 0.48 3.04 16 17 N -0.72 -12.13 5.56 -463.04 -2.57 -14.70 16 18 C 0.52 10.89 7.71 87.66 0.68 11.57 16 19 O -0.58 -17.07 15.42 10.75 0.17 -16.91 16 20 C -0.12 -1.93 5.78 29.85 0.17 -1.76 16 21 C 0.26 5.08 2.80 71.98 0.20 5.28 16 22 O -0.41 -7.17 10.54 -126.22 -1.33 -8.50 16 23 C 0.05 0.57 6.96 72.07 0.50 1.07 16 24 C -0.19 -2.12 6.35 30.77 0.20 -1.92 16 25 C 0.05 0.77 6.96 72.07 0.50 1.28 16 26 O -0.41 -9.71 9.77 -120.75 -1.18 -10.89 16 27 C 0.02 0.51 6.31 86.40 0.55 1.06 16 28 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.40 19.74 7.90 -92.71 -0.73 19.01 16 30 H 0.11 3.41 8.14 -2.39 -0.02 3.40 16 31 H 0.07 2.28 7.69 -2.39 -0.02 2.26 16 32 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 1.55 7.75 -2.39 -0.02 1.54 16 34 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.05 1.20 7.84 -2.38 -0.02 1.18 16 37 H 0.42 4.83 8.47 -92.71 -0.79 4.04 16 38 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.15 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.06 1.15 7.96 -2.39 -0.02 1.13 16 41 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 46 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.06 1.74 7.53 -2.39 -0.02 1.73 16 48 H 0.07 2.40 8.09 -2.39 -0.02 2.38 16 Total: -1.00 -79.50 395.92 -3.95 -83.45 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: -0.53 Total: 36.13 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: 6.28 Total: 23.03 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -9.34 Total: -117.15 kcal Atomic # 8 Polarization: -68.59 SS G_CDS: -2.39 Total: -70.98 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -79.50 -3.95 -83.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714964437.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.327 kcal (2) G-P(sol) polarization free energy of solvation -79.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds