Wall clock time and date at job start Sat Apr 11 2020 06:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47265 * 2 1 4 4 H 1.09003 * 109.47023 * 305.63041 * 3 2 1 5 5 C 1.53006 * 109.46773 * 65.62236 * 3 2 1 6 6 N 1.46497 * 109.47004 * 175.00117 * 5 3 2 7 7 C 1.34778 * 119.99968 * 180.02562 * 6 5 3 8 8 O 1.21279 * 120.00021 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99775 * 179.97438 * 7 6 5 10 10 C 1.53001 * 109.46527 * 179.97438 * 9 7 6 11 11 H 1.08996 * 110.62347 * 51.91359 * 10 9 7 12 12 C 1.54364 * 110.70408 * 288.62624 * 10 9 7 13 13 O 1.45947 * 105.07029 * 223.79480 * 12 10 9 14 14 C 1.34572 * 108.40418 * 32.44329 * 13 12 10 15 15 O 1.20825 * 125.94759 * 146.68295 * 14 13 12 16 16 C 1.51507 * 108.10255 * 326.66373 * 14 13 12 17 17 N 1.46896 * 109.47404 * 185.62459 * 3 2 1 18 18 C 1.46899 * 110.99940 * 86.26694 * 17 3 2 19 19 C 1.50703 * 109.47190 * 174.55660 * 18 17 3 20 20 O 1.21290 * 119.99719 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00053 * 179.97438 * 19 18 17 22 22 C 1.37100 * 120.00021 * 179.72564 * 21 19 18 23 23 H 1.07996 * 119.99815 * 0.27325 * 22 21 19 24 24 C 1.38947 * 120.00036 * 180.27852 * 22 21 19 25 25 N 1.31412 * 119.99770 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00148 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47220 * 89.99682 * 26 24 22 28 28 H 1.48491 * 109.47243 * 209.99552 * 26 24 22 29 29 H 1.48504 * 109.47095 * 329.99771 * 26 24 22 30 30 H 1.08998 * 109.46821 * 294.37506 * 1 2 3 31 31 H 1.09000 * 109.47255 * 54.37515 * 1 2 3 32 32 H 1.08995 * 109.47317 * 174.37861 * 1 2 3 33 33 H 1.09001 * 109.46826 * 240.00837 * 2 1 3 34 34 H 1.08996 * 109.47562 * 120.00108 * 2 1 3 35 35 H 1.08997 * 109.47351 * 295.00359 * 5 3 2 36 36 H 1.09001 * 109.46473 * 55.00455 * 5 3 2 37 37 H 0.97005 * 120.00346 * 359.97438 * 6 5 3 38 38 H 1.08997 * 109.47518 * 299.99985 * 9 7 6 39 39 H 1.08996 * 109.46777 * 60.00386 * 9 7 6 40 40 H 1.09004 * 110.32087 * 342.68793 * 12 10 9 41 41 H 1.08998 * 110.32479 * 104.90041 * 12 10 9 42 42 H 1.09000 * 110.40632 * 261.58926 * 16 14 13 43 43 H 1.09000 * 110.50146 * 139.22098 * 16 14 13 44 44 H 1.00898 * 110.99823 * 322.31403 * 17 3 2 45 45 H 1.09001 * 109.47310 * 54.55304 * 18 17 3 46 46 H 1.09008 * 109.46942 * 294.55717 * 18 17 3 47 47 H 0.97008 * 119.99873 * 359.97438 * 21 19 18 48 48 H 0.97008 * 119.99996 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 -0.8353 5 6 1.6487 2.1218 1.3140 6 7 2.2380 3.4620 1.3653 7 6 2.0269 4.2504 2.4378 8 8 1.3493 3.8501 3.3607 9 6 2.6336 5.6289 2.4909 10 6 2.2421 6.3081 3.8047 11 1 2.4739 5.6647 4.6535 12 6 0.7465 6.6901 3.7971 13 8 0.6970 8.0405 4.3486 14 6 1.8236 8.6857 3.9943 15 8 1.9200 9.8665 3.7569 16 6 2.9501 7.6738 3.9455 17 7 3.5027 1.4448 -0.1357 18 6 3.9003 1.4011 -1.5492 19 6 5.3973 1.5393 -1.6545 20 8 6.0669 1.6626 -0.6508 21 7 5.9918 1.5259 -2.8640 22 6 7.3531 1.6573 -2.9601 23 1 7.9494 1.7672 -2.0664 24 6 7.9656 1.6493 -4.2073 25 7 7.2399 1.5153 -5.2947 26 14 9.8202 1.8291 -4.3383 27 1 10.4520 0.4859 -4.2952 28 1 10.1635 2.4966 -5.6196 29 1 10.3195 2.6477 -3.2043 30 1 -0.3633 0.4241 0.9361 31 1 -0.3634 0.5986 -0.8353 32 1 -0.3634 -1.0227 -0.1007 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 0.5631 2.1997 1.3735 36 1 2.0170 1.5305 2.1523 37 1 2.7809 3.7818 0.6277 38 1 3.7192 5.5506 2.4312 39 1 2.2654 6.2203 1.6527 40 1 0.3592 6.6830 2.7782 41 1 0.1773 6.0041 4.4243 42 1 3.5314 7.7073 4.8669 43 1 3.5928 7.8591 3.0848 44 1 3.9148 0.6815 0.3796 45 1 3.4211 2.2192 -2.0870 46 1 3.5917 0.4504 -1.9842 47 1 5.4562 1.4269 -3.6667 48 1 7.6675 1.5093 -6.1654 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715054976.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:48 Heat of formation + Delta-G solvation = -167.040950 kcal Electronic energy + Delta-G solvation = -29348.970653 eV Core-core repulsion = 25017.505950 eV Total energy + Delta-G solvation = -4331.464703 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.33850 -39.83407 -38.59560 -37.78807 -37.31851 -34.56112 -34.21599 -33.92115 -32.58907 -31.27333 -29.74804 -28.48734 -27.41114 -25.97713 -24.29589 -23.43028 -21.90511 -21.57402 -20.97928 -20.21546 -19.36103 -18.00521 -17.75145 -17.18068 -16.73016 -16.63512 -16.50964 -16.08135 -15.59510 -15.29238 -15.17646 -14.61219 -14.46524 -14.28979 -13.98556 -13.93646 -13.79656 -13.56706 -13.31986 -13.17803 -13.06075 -12.67979 -12.33434 -12.23767 -12.20662 -11.82713 -11.70251 -11.60472 -11.56553 -11.50548 -11.32642 -11.10209 -10.89547 -10.84159 -10.51999 -10.45227 -10.28757 -9.98233 -9.58004 -9.08528 -8.61645 -8.17813 -8.03893 -6.49008 -3.90106 1.60858 2.50455 3.03516 3.08034 3.12394 3.21942 3.27207 3.66645 3.81935 3.89841 3.95813 4.16586 4.21337 4.33177 4.60774 4.65154 4.75642 4.87396 4.94730 4.97538 5.04862 5.06155 5.12930 5.20135 5.20646 5.25284 5.28913 5.39677 5.48782 5.56280 5.65326 5.67544 5.72412 5.77638 5.80820 5.93869 6.01223 6.17829 6.35696 6.38490 7.02220 7.10953 7.45414 7.47404 7.48193 7.98456 8.11939 8.53132 9.10625 9.46332 9.97351 10.68537 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009157 B = 0.002306 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.101233 B =12138.270761 C =14671.716601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.152 4.152 3 C 0.071 3.929 4 H 0.084 0.916 5 C 0.134 3.866 6 N -0.709 5.709 7 C 0.511 3.489 8 O -0.552 6.552 9 C -0.139 4.139 10 C -0.104 4.104 11 H 0.111 0.889 12 C 0.064 3.936 13 O -0.356 6.356 14 C 0.485 3.515 15 O -0.452 6.452 16 C -0.186 4.186 17 N -0.663 5.663 18 C 0.050 3.950 19 C 0.439 3.561 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.283 1.283 29 H -0.269 1.269 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.411 0.589 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.114 0.886 44 H 0.352 0.648 45 H 0.085 0.915 46 H 0.045 0.955 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.578 3.078 11.418 18.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.192 4.192 3 C -0.040 4.040 4 H 0.102 0.898 5 C 0.009 3.991 6 N -0.360 5.360 7 C 0.297 3.703 8 O -0.431 6.431 9 C -0.179 4.179 10 C -0.123 4.123 11 H 0.129 0.871 12 C -0.009 4.009 13 O -0.274 6.274 14 C 0.325 3.675 15 O -0.335 6.335 16 C -0.224 4.224 17 N -0.294 5.294 18 C -0.083 4.083 19 C 0.225 3.775 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.430 4.430 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.247 0.753 38 H 0.128 0.872 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.132 0.868 44 H 0.172 0.828 45 H 0.103 0.897 46 H 0.063 0.937 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.605 4.196 12.575 19.724 hybrid contribution 0.827 -1.043 -1.456 1.973 sum -13.777 3.154 11.119 17.983 Atomic orbital electron populations 1.21773 0.95258 1.01855 1.02019 1.22226 0.96916 0.97214 1.02851 1.21953 0.89169 0.95224 0.97612 0.89791 1.21367 0.97356 0.82879 0.97475 1.45834 1.52899 1.15886 1.21406 1.20477 0.80710 0.86962 0.82170 1.90685 1.40248 1.75417 1.36786 1.21805 1.03838 0.93983 0.98246 1.22154 0.94568 0.95786 0.99799 0.87068 1.24204 0.97308 0.78987 1.00449 1.87301 1.42732 1.28257 1.69098 1.23321 0.84656 0.88193 0.71344 1.90716 1.84853 1.16075 1.41820 1.23047 0.98769 0.93616 1.06948 1.60125 1.05836 1.52753 1.10703 1.21729 0.96106 1.00910 0.89557 1.19787 0.88491 0.84793 0.84470 1.90532 1.65218 1.54998 1.35872 1.41879 1.08101 1.63554 1.06456 1.19687 0.82219 1.46943 0.94113 0.87930 1.25264 1.00572 0.97252 0.94805 1.69608 1.36369 1.50104 0.98163 0.85862 0.82180 0.78529 0.77765 1.20408 1.20893 1.19374 0.92362 0.92567 0.92691 0.91314 0.91306 0.91213 0.91560 0.75290 0.87217 0.88371 0.89995 0.86273 0.86329 0.86758 0.82781 0.89670 0.93702 0.77506 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.54 37.16 0.35 -0.74 16 2 C -0.15 -1.30 5.38 -26.73 -0.14 -1.44 16 3 C 0.07 0.68 2.21 -67.71 -0.15 0.53 16 4 H 0.08 0.76 7.69 -51.93 -0.40 0.36 16 5 C 0.13 1.29 5.02 -4.04 -0.02 1.27 16 6 N -0.71 -6.91 5.39 -60.29 -0.32 -7.24 16 7 C 0.51 5.03 7.66 -10.98 -0.08 4.94 16 8 O -0.55 -6.92 15.27 5.56 0.08 -6.83 16 9 C -0.14 -0.94 4.90 -27.88 -0.14 -1.08 16 10 C -0.10 -0.71 2.75 -89.13 -0.25 -0.95 16 11 H 0.11 0.79 7.88 -51.93 -0.41 0.38 16 12 C 0.06 0.49 6.61 37.87 0.25 0.74 16 13 O -0.36 -3.67 11.17 -39.76 -0.44 -4.11 16 14 C 0.48 5.01 8.50 36.40 0.31 5.32 16 15 O -0.45 -6.29 18.00 -18.32 -0.33 -6.62 16 16 C -0.19 -1.22 6.61 -26.71 -0.18 -1.39 16 17 N -0.66 -8.57 5.23 -107.98 -0.56 -9.14 16 18 C 0.05 0.74 5.99 -4.97 -0.03 0.71 16 19 C 0.44 9.45 7.83 -10.98 -0.09 9.36 16 20 O -0.58 -14.64 15.90 5.55 0.09 -14.55 16 21 N -0.56 -13.39 5.29 -10.96 -0.06 -13.45 16 22 C -0.30 -8.01 9.68 -14.93 -0.14 -8.15 16 23 H 0.10 2.89 7.16 -52.49 -0.38 2.51 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -23.67 13.05 55.50 0.72 -22.95 16 26 Si 0.93 20.37 29.55 -169.99 -5.02 15.34 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 29 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 30 H 0.06 0.41 6.98 -51.93 -0.36 0.05 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.63 7.52 -51.93 -0.39 0.24 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.64 6.96 -51.93 -0.36 0.28 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.41 3.96 8.14 -40.82 -0.33 3.63 16 38 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.52 7.96 -51.93 -0.41 0.10 16 40 H 0.08 0.56 7.69 -51.93 -0.40 0.16 16 41 H 0.12 0.89 8.07 -51.93 -0.42 0.48 16 42 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.11 0.63 7.74 -51.93 -0.40 0.23 16 44 H 0.35 4.95 8.36 -39.29 -0.33 4.62 16 45 H 0.09 1.14 7.92 -51.93 -0.41 0.73 16 46 H 0.04 0.61 7.56 -51.92 -0.39 0.22 16 47 H 0.39 8.91 7.90 -40.82 -0.32 8.59 16 48 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 401.05 15.07 6.04 6.04 Total: -1.00 -33.27 401.05 -7.59 -40.87 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -7.39 Total: 13.01 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -0.40 Total: 9.62 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.22 Total: -52.77 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.60 Total: -32.11 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.27 -7.59 -40.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715054976.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.175 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds