Wall clock time and date at job start Sat Apr 11 2020 06:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47265 * 2 1 4 4 H 1.09003 * 109.47023 * 305.63041 * 3 2 1 5 5 C 1.53006 * 109.46773 * 65.62236 * 3 2 1 6 6 N 1.46497 * 109.47004 * 175.00117 * 5 3 2 7 7 C 1.34778 * 119.99968 * 180.02562 * 6 5 3 8 8 O 1.21279 * 120.00021 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99775 * 179.97438 * 7 6 5 10 10 C 1.53001 * 109.46527 * 179.97438 * 9 7 6 11 11 H 1.08996 * 110.62347 * 51.91359 * 10 9 7 12 12 C 1.54364 * 110.70408 * 288.62624 * 10 9 7 13 13 O 1.45947 * 105.07029 * 223.79480 * 12 10 9 14 14 C 1.34572 * 108.40418 * 32.44329 * 13 12 10 15 15 O 1.20825 * 125.94759 * 146.68295 * 14 13 12 16 16 C 1.51507 * 108.10255 * 326.66373 * 14 13 12 17 17 N 1.46896 * 109.47404 * 185.62459 * 3 2 1 18 18 C 1.46899 * 110.99940 * 86.26694 * 17 3 2 19 19 C 1.50703 * 109.47190 * 174.55660 * 18 17 3 20 20 O 1.21290 * 119.99719 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00053 * 179.97438 * 19 18 17 22 22 C 1.37100 * 120.00021 * 179.72564 * 21 19 18 23 23 H 1.07996 * 119.99815 * 0.27325 * 22 21 19 24 24 C 1.38947 * 120.00036 * 180.27852 * 22 21 19 25 25 N 1.31412 * 119.99770 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00148 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47220 * 89.99682 * 26 24 22 28 28 H 1.48491 * 109.47243 * 209.99552 * 26 24 22 29 29 H 1.48504 * 109.47095 * 329.99771 * 26 24 22 30 30 H 1.08998 * 109.46821 * 294.37506 * 1 2 3 31 31 H 1.09000 * 109.47255 * 54.37515 * 1 2 3 32 32 H 1.08995 * 109.47317 * 174.37861 * 1 2 3 33 33 H 1.09001 * 109.46826 * 240.00837 * 2 1 3 34 34 H 1.08996 * 109.47562 * 120.00108 * 2 1 3 35 35 H 1.08997 * 109.47351 * 295.00359 * 5 3 2 36 36 H 1.09001 * 109.46473 * 55.00455 * 5 3 2 37 37 H 0.97005 * 120.00346 * 359.97438 * 6 5 3 38 38 H 1.08997 * 109.47518 * 299.99985 * 9 7 6 39 39 H 1.08996 * 109.46777 * 60.00386 * 9 7 6 40 40 H 1.09004 * 110.32087 * 342.68793 * 12 10 9 41 41 H 1.08998 * 110.32479 * 104.90041 * 12 10 9 42 42 H 1.09000 * 110.40632 * 261.58926 * 16 14 13 43 43 H 1.09000 * 110.50146 * 139.22098 * 16 14 13 44 44 H 1.00898 * 110.99823 * 322.31403 * 17 3 2 45 45 H 1.09001 * 109.47310 * 54.55304 * 18 17 3 46 46 H 1.09008 * 109.46942 * 294.55717 * 18 17 3 47 47 H 0.97008 * 119.99873 * 359.97438 * 21 19 18 48 48 H 0.97008 * 119.99996 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 -0.8353 5 6 1.6487 2.1218 1.3140 6 7 2.2380 3.4620 1.3653 7 6 2.0269 4.2504 2.4378 8 8 1.3493 3.8501 3.3607 9 6 2.6336 5.6289 2.4909 10 6 2.2421 6.3081 3.8047 11 1 2.4739 5.6647 4.6535 12 6 0.7465 6.6901 3.7971 13 8 0.6970 8.0405 4.3486 14 6 1.8236 8.6857 3.9943 15 8 1.9200 9.8665 3.7569 16 6 2.9501 7.6738 3.9455 17 7 3.5027 1.4448 -0.1357 18 6 3.9003 1.4011 -1.5492 19 6 5.3973 1.5393 -1.6545 20 8 6.0669 1.6626 -0.6508 21 7 5.9918 1.5259 -2.8640 22 6 7.3531 1.6573 -2.9601 23 1 7.9494 1.7672 -2.0664 24 6 7.9656 1.6493 -4.2073 25 7 7.2399 1.5153 -5.2947 26 14 9.8202 1.8291 -4.3383 27 1 10.4520 0.4859 -4.2952 28 1 10.1635 2.4966 -5.6196 29 1 10.3195 2.6477 -3.2043 30 1 -0.3633 0.4241 0.9361 31 1 -0.3634 0.5986 -0.8353 32 1 -0.3634 -1.0227 -0.1007 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 0.5631 2.1997 1.3735 36 1 2.0170 1.5305 2.1523 37 1 2.7809 3.7818 0.6277 38 1 3.7192 5.5506 2.4312 39 1 2.2654 6.2203 1.6527 40 1 0.3592 6.6830 2.7782 41 1 0.1773 6.0041 4.4243 42 1 3.5314 7.7073 4.8669 43 1 3.5928 7.8591 3.0848 44 1 3.9148 0.6815 0.3796 45 1 3.4211 2.2192 -2.0870 46 1 3.5917 0.4504 -1.9842 47 1 5.4562 1.4269 -3.6667 48 1 7.6675 1.5093 -6.1654 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715054976.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:47 Heat of formation + Delta-G solvation = -192.026525 kcal Electronic energy + Delta-G solvation = -29350.054109 eV Core-core repulsion = 25017.505950 eV Total energy + Delta-G solvation = -4332.548159 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.07032 -40.66425 -40.10042 -38.71341 -38.35680 -35.94679 -35.20973 -34.93765 -33.57939 -33.13778 -30.43362 -29.31537 -28.30984 -27.23401 -25.65839 -24.33348 -22.59157 -22.26679 -21.78451 -21.07643 -20.88260 -19.87580 -18.51766 -18.04477 -17.70379 -17.41936 -17.38439 -17.14086 -16.65329 -16.45897 -16.30987 -16.10148 -15.60368 -15.27826 -15.08965 -14.93358 -14.67269 -14.45333 -14.35494 -14.00212 -13.84220 -13.63261 -13.48074 -13.39202 -13.20307 -12.91708 -12.88132 -12.56390 -12.48980 -12.38128 -12.32426 -12.18616 -12.11291 -12.03732 -11.56282 -11.54551 -11.46785 -11.30523 -10.77682 -10.29780 -9.97449 -9.88826 -9.29218 -8.44239 -5.92051 0.83336 1.39361 1.43872 1.55552 1.75484 2.11018 2.29868 2.33443 2.37032 2.91262 3.02097 3.24043 3.32112 3.56821 3.62968 3.74230 3.85356 3.97903 4.11990 4.24958 4.30355 4.37070 4.41036 4.44676 4.54441 4.56051 4.59886 4.64699 4.66615 4.74736 4.82527 4.87155 4.88286 4.98471 5.11675 5.17530 5.23985 5.40193 5.44070 5.61319 5.66391 5.91702 6.12416 6.32559 6.38106 6.63931 6.70788 7.16752 7.36489 7.61780 8.17088 8.72980 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009157 B = 0.002306 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.101233 B =12138.270761 C =14671.716601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.149 4.149 3 C 0.081 3.919 4 H 0.097 0.903 5 C 0.137 3.863 6 N -0.710 5.710 7 C 0.507 3.493 8 O -0.582 6.582 9 C -0.134 4.134 10 C -0.096 4.096 11 H 0.109 0.891 12 C 0.063 3.937 13 O -0.375 6.375 14 C 0.484 3.516 15 O -0.497 6.497 16 C -0.172 4.172 17 N -0.670 5.670 18 C 0.066 3.934 19 C 0.440 3.560 20 O -0.620 6.620 21 N -0.576 5.576 22 C -0.329 4.329 23 H 0.079 0.921 24 C -0.013 4.013 25 N -0.921 5.921 26 Si 0.988 3.012 27 H -0.273 1.273 28 H -0.273 1.273 29 H -0.272 1.272 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.413 0.587 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.118 0.882 42 H 0.137 0.863 43 H 0.131 0.869 44 H 0.345 0.655 45 H 0.109 0.891 46 H 0.065 0.935 47 H 0.396 0.604 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.934 2.846 10.854 18.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.188 4.188 3 C -0.029 4.029 4 H 0.115 0.885 5 C 0.012 3.988 6 N -0.360 5.360 7 C 0.295 3.705 8 O -0.463 6.463 9 C -0.173 4.173 10 C -0.116 4.116 11 H 0.127 0.873 12 C -0.011 4.011 13 O -0.293 6.293 14 C 0.326 3.674 15 O -0.383 6.383 16 C -0.209 4.209 17 N -0.301 5.301 18 C -0.066 4.066 19 C 0.228 3.772 20 O -0.507 6.507 21 N -0.214 5.214 22 C -0.459 4.459 23 H 0.097 0.903 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.812 3.188 27 H -0.199 1.199 28 H -0.198 1.198 29 H -0.197 1.197 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.249 0.751 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.110 0.890 41 H 0.137 0.863 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.164 0.836 45 H 0.127 0.873 46 H 0.082 0.918 47 H 0.230 0.770 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.990 3.941 11.997 19.600 hybrid contribution 0.850 -1.023 -1.197 1.789 sum -14.140 2.918 10.800 18.030 Atomic orbital electron populations 1.21745 0.94070 1.02337 1.02408 1.22170 0.97871 0.96243 1.02532 1.21948 0.86907 0.96099 0.97968 0.88466 1.21327 0.97769 0.82805 0.96893 1.45890 1.52752 1.15864 1.21506 1.20980 0.80169 0.87862 0.81534 1.90675 1.41660 1.76247 1.37754 1.21835 1.04357 0.92248 0.98859 1.22085 0.93833 0.95762 0.99873 0.87285 1.24343 0.98154 0.77742 1.00837 1.87272 1.43449 1.29447 1.69150 1.23899 0.85531 0.88060 0.69874 1.90689 1.85507 1.18082 1.44019 1.23035 0.97509 0.91749 1.08635 1.60092 1.08041 1.52666 1.09313 1.21568 0.90956 1.02835 0.91263 1.20933 0.91186 0.82076 0.83050 1.90506 1.67111 1.56017 1.37024 1.41954 1.07352 1.64584 1.07463 1.19622 0.83770 1.48753 0.93741 0.90347 1.25968 1.04441 0.96604 0.94243 1.69665 1.37762 1.50335 0.98461 0.84989 0.77418 0.78540 0.77806 1.19890 1.19792 1.19702 0.92162 0.91926 0.92273 0.91675 0.91641 0.90337 0.93076 0.75076 0.86007 0.86388 0.89024 0.86348 0.84489 0.85057 0.83622 0.87258 0.91756 0.77040 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.54 71.98 0.69 -1.12 16 2 C -0.15 -2.24 5.38 30.60 0.16 -2.07 16 3 C 0.08 1.36 2.21 44.92 0.10 1.46 16 4 H 0.10 1.43 7.69 -2.39 -0.02 1.42 16 5 C 0.14 2.42 5.02 86.38 0.43 2.86 16 6 N -0.71 -12.57 5.39 -463.05 -2.50 -15.06 16 7 C 0.51 9.15 7.66 87.66 0.67 9.82 16 8 O -0.58 -13.96 15.27 -3.03 -0.05 -14.01 16 9 C -0.13 -1.50 4.90 29.85 0.15 -1.35 16 10 C -0.10 -1.13 2.75 -9.83 -0.03 -1.16 16 11 H 0.11 1.38 7.88 -2.39 -0.02 1.36 16 12 C 0.06 0.89 6.61 72.45 0.48 1.37 16 13 O -0.38 -7.57 11.17 -55.18 -0.62 -8.19 16 14 C 0.48 9.70 8.50 71.49 0.61 10.31 16 15 O -0.50 -13.94 18.00 21.55 0.39 -13.56 16 16 C -0.17 -1.90 6.61 30.60 0.20 -1.70 16 17 N -0.67 -16.23 5.23 -495.55 -2.59 -18.82 16 18 C 0.07 1.84 5.99 85.56 0.51 2.35 16 19 C 0.44 18.73 7.83 87.66 0.69 19.42 16 20 O -0.62 -31.41 15.90 -3.06 -0.05 -31.46 16 21 N -0.58 -27.40 5.29 -306.99 -1.62 -29.02 16 22 C -0.33 -17.78 9.68 84.04 0.81 -16.96 16 23 H 0.08 4.54 7.16 -2.91 -0.02 4.52 16 24 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 25 N -0.92 -47.90 13.05 21.66 0.28 -47.62 16 26 Si 0.99 41.46 29.55 68.60 2.03 43.49 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 29 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 30 H 0.06 0.72 6.98 -2.39 -0.02 0.70 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 1.05 7.52 -2.39 -0.02 1.03 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 1.28 6.96 -2.39 -0.02 1.27 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.41 7.08 8.14 -92.70 -0.75 6.32 16 38 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.12 0.89 7.96 -2.39 -0.02 0.87 16 40 H 0.09 1.11 7.69 -2.39 -0.02 1.09 16 41 H 0.12 1.70 8.07 -2.39 -0.02 1.68 16 42 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.13 1.08 7.74 -2.39 -0.02 1.06 16 44 H 0.34 9.36 8.36 -89.70 -0.75 8.61 16 45 H 0.11 2.58 7.92 -2.39 -0.02 2.56 16 46 H 0.06 1.59 7.56 -2.38 -0.02 1.57 16 47 H 0.40 17.88 7.90 -92.70 -0.73 17.15 16 48 H 0.28 13.53 8.31 -92.70 -0.77 12.75 16 Total: -1.00 -73.07 401.05 0.00 -73.07 By element: Atomic # 1 Polarization: 39.38 SS G_CDS: -1.22 Total: 38.15 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: 5.94 Total: 23.02 kcal Atomic # 7 Polarization: -104.10 SS G_CDS: -6.42 Total: -110.52 kcal Atomic # 8 Polarization: -66.89 SS G_CDS: -0.32 Total: -67.21 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -73.07 0.00 -73.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715054976.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.955 kcal (2) G-P(sol) polarization free energy of solvation -73.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds