Wall clock time and date at job start Sat Apr 11 2020 06:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86804 * 120.00384 * 2 1 4 4 H 1.48501 * 109.46944 * 270.00448 * 3 2 1 5 5 H 1.48503 * 109.46569 * 29.99961 * 3 2 1 6 6 H 1.48497 * 109.47240 * 150.00262 * 3 2 1 7 7 C 1.38950 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00698 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99987 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00435 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00010 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00360 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47294 * 180.02562 * 12 10 9 14 14 C 1.47016 * 110.99785 * 293.94926 * 13 12 10 15 15 C 1.53103 * 109.29298 * 177.58836 * 14 13 12 16 16 O 1.43103 * 109.20778 * 56.83042 * 15 14 13 17 17 C 1.43016 * 113.76264 * 301.35437 * 16 15 14 18 18 H 1.08998 * 109.50869 * 298.73652 * 17 16 15 19 19 C 1.53005 * 109.54422 * 178.63083 * 17 16 15 20 20 N 1.46504 * 109.47022 * 65.19427 * 19 17 16 21 21 C 1.34777 * 119.99758 * 180.02562 * 20 19 17 22 22 O 1.21277 * 120.00181 * 359.97438 * 21 20 19 23 23 C 1.50695 * 119.99740 * 180.02562 * 21 20 19 24 24 H 1.08999 * 109.82515 * 55.69699 * 23 21 20 25 25 C 1.54383 * 109.83083 * 294.80967 * 23 21 20 26 26 C 1.55449 * 102.18763 * 219.18334 * 25 23 21 27 27 C 1.54943 * 100.98869 * 34.03936 * 26 25 23 28 28 O 1.43238 * 109.82875 * 176.58663 * 23 21 20 29 29 C 1.47015 * 110.99783 * 170.31998 * 13 12 10 30 30 H 0.97004 * 120.00076 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99620 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47105 * 59.99637 * 12 10 9 33 33 H 1.09007 * 109.46924 * 299.99882 * 12 10 9 34 34 H 1.09002 * 109.50934 * 297.54561 * 14 13 12 35 35 H 1.09003 * 109.50733 * 57.63155 * 14 13 12 36 36 H 1.09004 * 109.50456 * 176.81005 * 15 14 13 37 37 H 1.09008 * 109.50567 * 296.93791 * 15 14 13 38 38 H 1.08995 * 109.47124 * 185.19719 * 19 17 16 39 39 H 1.09004 * 109.46671 * 305.19664 * 19 17 16 40 40 H 0.97003 * 120.00108 * 0.02562 * 20 19 17 41 41 H 1.08997 * 110.84739 * 337.32461 * 25 23 21 42 42 H 1.09002 * 110.84697 * 100.94045 * 25 23 21 43 43 H 1.09004 * 111.06132 * 276.12296 * 26 25 23 44 44 H 1.09003 * 111.14780 * 151.99455 * 26 25 23 45 45 H 1.09004 * 110.31042 * 204.69057 * 27 26 25 46 46 H 1.09004 * 110.39271 * 82.56475 * 27 26 25 47 47 H 1.08998 * 109.50639 * 302.32307 * 29 13 12 48 48 H 1.08995 * 109.50980 * 62.45590 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0011 13 7 2.1983 -5.9795 0.0016 14 6 2.9641 -6.0184 -1.2527 15 6 3.9861 -7.1565 -1.1863 16 8 3.3036 -8.3877 -0.9292 17 6 2.5481 -8.3851 0.2851 18 1 3.2178 -8.2249 1.1301 19 6 1.8344 -9.7288 0.4467 20 7 2.8278 -10.7922 0.6163 21 6 2.4273 -12.0691 0.7767 22 8 1.2447 -12.3377 0.7813 23 6 3.4491 -13.1628 0.9517 24 1 4.1012 -12.9283 1.7931 25 6 4.2877 -13.3070 -0.3365 26 6 4.4552 -14.8484 -0.4482 27 6 3.1010 -15.3350 0.1265 28 8 2.7885 -14.4126 1.1823 29 6 1.5122 -7.2590 0.2330 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 0.0005 32 1 0.6167 -4.9209 -0.8885 33 1 0.6174 -4.9205 0.8914 34 1 2.2852 -6.1872 -2.0886 35 1 3.4836 -5.0703 -1.3916 36 1 4.5170 -7.2247 -2.1359 37 1 4.6975 -6.9604 -0.3841 38 1 1.1870 -9.6933 1.3229 39 1 1.2342 -9.9304 -0.4406 40 1 3.7737 -10.5773 0.6130 41 1 3.7478 -12.9122 -1.1971 42 1 5.2553 -12.8173 -0.2263 43 1 5.2887 -15.1971 0.1614 44 1 4.5746 -15.1567 -1.4869 45 1 3.1997 -16.3453 0.5236 46 1 2.3292 -15.3052 -0.6427 47 1 0.9726 -7.2168 1.1790 48 1 0.8101 -7.4477 -0.5791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715278231.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:55 Heat of formation + Delta-G solvation = -151.448530 kcal Electronic energy + Delta-G solvation = -29643.997761 eV Core-core repulsion = 25313.209196 eV Total energy + Delta-G solvation = -4330.788565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.69170 -39.82063 -38.60383 -38.04792 -35.50606 -34.93983 -33.86742 -32.73339 -31.79016 -31.30241 -30.10905 -29.04735 -26.91560 -25.18298 -23.86276 -23.81427 -22.34491 -22.24205 -20.89365 -20.14379 -19.25717 -18.02368 -17.86255 -17.31751 -16.65430 -16.38441 -16.16224 -16.00870 -15.73725 -15.13043 -14.99278 -14.92613 -14.74702 -14.30304 -14.09283 -13.95773 -13.66945 -13.62331 -13.50729 -13.31087 -12.92177 -12.42254 -12.34757 -12.15895 -12.02034 -11.76138 -11.74262 -11.55243 -11.49223 -11.27740 -11.23574 -10.96386 -10.61084 -10.54530 -10.42247 -10.26142 -9.77427 -9.58367 -9.51361 -9.33078 -8.51811 -8.05245 -7.95999 -6.45836 -3.86980 2.34307 2.66411 3.14572 3.23806 3.29270 3.47228 3.56383 3.80655 3.85923 3.91727 4.18098 4.28118 4.33003 4.59703 4.65114 4.69696 4.80945 4.89177 4.93465 5.00198 5.14772 5.16250 5.20356 5.25142 5.27830 5.32813 5.33817 5.35655 5.50063 5.52480 5.57812 5.59918 5.75025 5.79947 5.83563 6.06545 6.12329 6.20513 6.25671 6.43810 7.02753 7.09379 7.21623 7.24716 7.51065 7.96975 8.01449 8.56544 9.13386 9.49319 10.00455 10.71713 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.039170 B = 0.001691 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.653721 B =16550.108252 C =16985.061796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.443 3.557 11 O -0.580 6.580 12 C 0.046 3.954 13 N -0.512 5.512 14 C 0.013 3.987 15 C 0.069 3.931 16 O -0.386 6.386 17 C 0.085 3.915 18 H 0.075 0.925 19 C 0.130 3.870 20 N -0.721 5.721 21 C 0.499 3.501 22 O -0.525 6.525 23 C 0.066 3.934 24 H 0.108 0.892 25 C -0.146 4.146 26 C -0.155 4.155 27 C 0.047 3.953 28 O -0.353 6.353 29 C 0.025 3.975 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.032 0.968 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.404 0.596 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.063 0.937 47 H 0.087 0.913 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.003 -25.901 -1.291 26.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.198 5.198 10 C 0.228 3.772 11 O -0.464 6.464 12 C -0.085 4.085 13 N -0.237 5.237 14 C -0.114 4.114 15 C -0.008 4.008 16 O -0.305 6.305 17 C 0.027 3.973 18 H 0.093 0.907 19 C 0.006 3.994 20 N -0.375 5.375 21 C 0.284 3.716 22 O -0.400 6.400 23 C 0.004 3.996 24 H 0.125 0.875 25 C -0.184 4.184 26 C -0.192 4.192 27 C -0.030 4.030 28 O -0.270 6.270 29 C -0.104 4.104 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.051 0.949 35 H 0.133 0.867 36 H 0.115 0.885 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.239 0.761 41 H 0.103 0.897 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.082 0.918 47 H 0.106 0.894 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.003 -26.060 -0.844 26.998 hybrid contribution -0.374 1.307 -0.706 1.532 sum 6.630 -24.753 -1.550 25.672 Atomic orbital electron populations 1.69609 1.05959 1.28233 1.50351 1.25270 0.95633 0.99759 0.97223 0.85852 0.79245 0.80774 0.78377 1.20416 1.20898 1.19400 1.19698 0.93363 0.82165 1.47770 0.87873 1.41868 1.09231 1.04588 1.64149 1.19676 0.88376 0.84485 0.84619 1.90470 1.13670 1.86871 1.55420 1.21872 0.93855 0.91021 1.01763 1.61786 1.25270 1.01141 1.35503 1.22973 0.96891 1.02010 0.89554 1.22699 0.93912 0.82515 1.01650 1.87948 1.65594 1.35995 1.40943 1.22300 0.93302 0.93206 0.88540 0.90684 1.21353 0.90961 0.84285 1.02786 1.45839 1.10739 1.06506 1.74369 1.20995 0.90403 0.83530 0.76647 1.90724 1.17853 1.82616 1.48844 1.22634 0.92017 0.85240 0.99693 0.87486 1.23155 1.00890 0.97471 0.96903 1.23309 0.98449 0.94612 1.02869 1.23488 0.95411 0.93723 0.90329 1.88529 1.71904 1.20914 1.45671 1.22677 0.95692 0.89809 1.02215 0.91817 0.77456 0.93255 0.89133 0.94940 0.86707 0.88527 0.91969 0.89695 0.90571 0.76139 0.89743 0.88751 0.89885 0.89398 0.89141 0.91843 0.89437 0.93839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.17 13.05 55.50 0.72 -23.44 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 9 N -0.56 -13.92 5.29 -10.96 -0.06 -13.98 16 10 C 0.44 10.12 7.49 -10.99 -0.08 10.04 16 11 O -0.58 -14.98 13.90 5.55 0.08 -14.90 16 12 C 0.05 0.80 5.45 -4.98 -0.03 0.77 16 13 N -0.51 -8.17 4.47 -235.75 -1.05 -9.22 16 14 C 0.01 0.21 5.29 -3.71 -0.02 0.19 16 15 C 0.07 0.86 7.02 37.21 0.26 1.12 16 16 O -0.39 -4.62 10.42 -35.23 -0.37 -4.98 16 17 C 0.09 0.93 2.84 -26.68 -0.08 0.85 16 18 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 19 C 0.13 1.32 5.35 -4.04 -0.02 1.29 16 20 N -0.72 -6.51 5.48 -60.29 -0.33 -6.84 16 21 C 0.50 5.52 7.03 -10.99 -0.08 5.44 16 22 O -0.53 -8.22 16.52 -14.10 -0.23 -8.45 16 23 C 0.07 0.54 3.94 -27.16 -0.11 0.43 16 24 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 25 C -0.15 -0.81 6.53 -24.71 -0.16 -0.97 16 26 C -0.15 -0.73 7.16 -24.40 -0.17 -0.90 16 27 C 0.05 0.33 7.78 38.18 0.30 0.63 16 28 O -0.35 -3.74 10.56 -54.89 -0.58 -4.32 16 29 C 0.03 0.31 4.93 -3.71 -0.02 0.29 16 30 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 32 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 33 H 0.09 1.41 8.04 -51.93 -0.42 1.00 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.11 2.14 5.85 -51.93 -0.30 1.84 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.40 2.75 8.47 -40.82 -0.35 2.41 16 41 H 0.08 0.55 7.84 -51.93 -0.41 0.14 16 42 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 48 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 392.17 15.07 5.91 5.91 Total: -1.00 -34.41 392.17 -9.03 -43.44 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -7.65 Total: 9.75 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: -0.45 Total: 11.35 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.72 Total: -53.49 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -1.10 Total: -32.65 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.41 -9.03 -43.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715278231.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.010 kcal (2) G-P(sol) polarization free energy of solvation -34.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds