Wall clock time and date at job start Sat Apr 11 2020 06:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86804 * 119.99644 * 2 1 4 4 H 1.48497 * 109.46862 * 269.99630 * 3 2 1 5 5 H 1.48501 * 109.47116 * 29.99558 * 3 2 1 6 6 H 1.48502 * 109.46694 * 149.99770 * 3 2 1 7 7 C 1.38947 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99621 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00282 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99943 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00138 * 359.72619 * 10 9 7 12 12 C 1.50703 * 119.99550 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46883 * 173.45372 * 12 10 9 14 14 C 1.47012 * 111.00007 * 293.63877 * 13 12 10 15 15 C 1.53104 * 109.25375 * 177.60692 * 14 13 12 16 16 O 1.43009 * 109.25942 * 56.84733 * 15 14 13 17 17 C 1.43011 * 113.73998 * 301.32658 * 16 15 14 18 18 H 1.08996 * 109.50676 * 298.69069 * 17 16 15 19 19 C 1.53004 * 109.50891 * 178.60656 * 17 16 15 20 20 N 1.46496 * 109.46987 * 64.99601 * 19 17 16 21 21 C 1.34778 * 120.00037 * 179.97438 * 20 19 17 22 22 O 1.21286 * 119.99670 * 0.02562 * 21 20 19 23 23 C 1.50695 * 120.00129 * 180.02562 * 21 20 19 24 24 H 1.09003 * 109.87091 * 303.99307 * 23 21 20 25 25 C 1.54099 * 109.88160 * 65.00325 * 23 21 20 26 26 C 1.54809 * 104.19090 * 121.45335 * 25 23 21 27 27 C 1.54995 * 102.08940 * 20.88145 * 26 25 23 28 28 O 1.43749 * 109.87995 * 182.83645 * 23 21 20 29 29 C 1.47013 * 110.99814 * 169.99964 * 13 12 10 30 30 H 0.96998 * 120.00271 * 0.02562 * 1 2 3 31 31 H 0.97004 * 119.99851 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47264 * 293.45519 * 12 10 9 33 33 H 1.09003 * 109.47502 * 53.45557 * 12 10 9 34 34 H 1.08997 * 109.50411 * 297.53599 * 14 13 12 35 35 H 1.08998 * 109.50684 * 57.63224 * 14 13 12 36 36 H 1.09002 * 109.49986 * 176.78083 * 15 14 13 37 37 H 1.08996 * 109.50669 * 296.86599 * 15 14 13 38 38 H 1.08993 * 109.47011 * 185.00249 * 19 17 16 39 39 H 1.09007 * 109.46487 * 305.00119 * 19 17 16 40 40 H 0.97003 * 120.00485 * 0.02562 * 20 19 17 41 41 H 1.08997 * 110.48638 * 240.13308 * 25 23 21 42 42 H 1.08998 * 110.48465 * 2.64370 * 25 23 21 43 43 H 1.08999 * 110.90728 * 139.07376 * 26 25 23 44 44 H 1.09001 * 110.90664 * 262.68262 * 26 25 23 45 45 H 1.09004 * 110.61988 * 81.48131 * 27 26 25 46 46 H 1.09002 * 110.62048 * 204.31424 * 27 26 25 47 47 H 1.09001 * 109.50696 * 302.32715 * 29 13 12 48 48 H 1.09000 * 109.50768 * 62.46104 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 -0.0045 12 6 1.2439 -4.8629 0.0000 13 7 2.1908 -5.9749 -0.1578 14 6 2.8240 -5.9435 -1.4842 15 6 3.8441 -7.0809 -1.5838 16 8 3.1892 -8.3258 -1.3257 17 6 2.5621 -8.3912 -0.0421 18 1 3.3153 -8.2755 0.7373 19 6 1.8652 -9.7439 0.1178 20 7 2.8677 -10.8122 0.1217 21 6 2.4826 -12.0972 0.2522 22 8 1.3061 -12.3691 0.3661 23 6 3.5138 -13.1961 0.2568 24 1 4.1163 -13.1425 -0.6500 25 6 4.4192 -13.0600 1.4963 26 6 4.2467 -14.4058 2.2418 27 6 3.7258 -15.3358 1.1166 28 8 2.8642 -14.4757 0.3404 29 6 1.5290 -7.2672 0.0731 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 -0.0002 32 1 0.7077 -4.9733 0.9424 33 1 0.5326 -4.8715 -0.8259 34 1 2.0626 -6.0691 -2.2540 35 1 3.3289 -4.9877 -1.6240 36 1 4.2747 -7.0969 -2.5850 37 1 4.6348 -6.9259 -0.8498 38 1 1.3138 -9.7597 1.0578 39 1 1.1744 -9.8969 -0.7114 40 1 3.8087 -10.5948 0.0310 41 1 5.4578 -12.9203 1.1966 42 1 4.0884 -12.2304 2.1211 43 1 5.2016 -14.7611 2.6291 44 1 3.5128 -14.3155 3.0427 45 1 4.5525 -15.7016 0.5075 46 1 3.1625 -16.1689 1.5371 47 1 1.0893 -7.2778 1.0705 48 1 0.7469 -7.4139 -0.6718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715278235.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:05 Heat of formation + Delta-G solvation = -150.566355 kcal Electronic energy + Delta-G solvation = -29604.679957 eV Core-core repulsion = 25273.929645 eV Total energy + Delta-G solvation = -4330.750311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.68072 -39.82601 -38.63586 -38.05127 -35.51761 -34.95473 -33.86243 -32.72970 -31.79173 -31.29110 -30.08650 -29.04880 -26.91003 -25.17227 -23.91965 -23.83790 -22.40987 -22.18863 -20.90656 -20.18749 -19.24300 -18.05621 -17.85291 -17.03119 -16.76188 -16.53365 -16.14805 -15.90539 -15.51734 -15.35709 -15.11755 -14.73098 -14.69978 -14.38498 -14.14157 -14.10446 -13.89773 -13.59073 -13.45551 -13.33185 -12.94171 -12.38679 -12.27392 -12.12057 -12.02483 -11.75882 -11.74371 -11.55095 -11.41836 -11.29198 -11.23130 -10.95916 -10.58202 -10.51307 -10.42497 -10.25863 -9.83468 -9.68229 -9.51644 -9.34488 -8.51648 -8.05402 -7.97272 -6.45533 -3.86688 2.32859 2.59139 3.14714 3.23890 3.29341 3.50731 3.60496 3.80927 3.85808 3.99323 4.18093 4.26843 4.33222 4.50599 4.67874 4.70230 4.81136 4.87719 4.93825 4.99820 5.10404 5.13514 5.19736 5.20400 5.27640 5.31948 5.34261 5.39027 5.49655 5.51772 5.53323 5.58953 5.74385 5.79524 5.83617 6.05422 6.09893 6.19018 6.22960 6.31462 7.02394 7.08122 7.19740 7.22927 7.51286 7.95380 8.01746 8.57052 9.13801 9.49809 10.01082 10.72045 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.034687 B = 0.001681 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.032809 B =16648.316702 C =16790.099326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.443 3.557 11 O -0.579 6.579 12 C 0.046 3.954 13 N -0.512 5.512 14 C 0.016 3.984 15 C 0.069 3.931 16 O -0.385 6.385 17 C 0.085 3.915 18 H 0.075 0.925 19 C 0.131 3.869 20 N -0.721 5.721 21 C 0.512 3.488 22 O -0.522 6.522 23 C 0.061 3.939 24 H 0.096 0.904 25 C -0.148 4.148 26 C -0.154 4.154 27 C 0.043 3.957 28 O -0.348 6.348 29 C 0.026 3.974 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.034 0.966 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.405 0.595 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.370 -25.599 1.432 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.228 3.772 11 O -0.463 6.463 12 C -0.085 4.085 13 N -0.237 5.237 14 C -0.112 4.112 15 C -0.008 4.008 16 O -0.304 6.304 17 C 0.026 3.974 18 H 0.093 0.907 19 C 0.007 3.993 20 N -0.374 5.374 21 C 0.297 3.703 22 O -0.397 6.397 23 C -0.001 4.001 24 H 0.114 0.886 25 C -0.186 4.186 26 C -0.192 4.192 27 C -0.033 4.033 28 O -0.265 6.265 29 C -0.104 4.104 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.239 0.761 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.116 0.884 47 H 0.106 0.894 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.333 -25.778 1.642 26.851 hybrid contribution -0.290 1.322 -0.409 1.414 sum 7.043 -24.456 1.232 25.480 Atomic orbital electron populations 1.69611 1.05952 1.28224 1.50397 1.25270 0.95633 0.99751 0.97245 0.85853 0.79236 0.80785 0.78381 1.20414 1.20905 1.19409 1.19694 0.93359 0.82176 1.47747 0.87886 1.41878 1.09223 1.04595 1.64240 1.19686 0.88399 0.84462 0.84673 1.90493 1.13624 1.86926 1.55241 1.21884 0.93635 0.91080 1.01906 1.61778 1.31163 1.00674 1.30047 1.22904 0.97701 1.01799 0.88781 1.22676 0.94321 0.82132 1.01656 1.87947 1.71853 1.36236 1.34334 1.22305 0.95006 0.93116 0.86943 0.90673 1.21359 0.90927 0.83909 1.03126 1.45776 1.11157 1.05528 1.74987 1.20432 0.89877 0.83318 0.76667 1.90736 1.18281 1.82912 1.47740 1.22623 0.92326 0.85086 1.00054 0.88611 1.22963 1.00278 0.99582 0.95808 1.23147 1.02632 0.94487 0.98922 1.23651 0.94240 0.93977 0.91457 1.89022 1.43983 1.19808 1.73735 1.22674 0.95660 0.89666 1.02361 0.91826 0.77473 0.89077 0.93320 0.94776 0.87253 0.88488 0.91941 0.89682 0.90435 0.76086 0.89333 0.89754 0.89639 0.90115 0.91754 0.88448 0.89423 0.93776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.19 13.05 55.50 0.72 -23.46 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.30 -8.21 9.68 -14.94 -0.14 -8.35 16 8 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 9 N -0.56 -13.95 5.29 -10.96 -0.06 -14.01 16 10 C 0.44 10.12 7.35 -10.98 -0.08 10.04 16 11 O -0.58 -15.02 14.25 5.55 0.08 -14.95 16 12 C 0.05 0.80 5.45 -4.97 -0.03 0.77 16 13 N -0.51 -8.14 4.42 -235.74 -1.04 -9.18 16 14 C 0.02 0.25 5.30 -3.71 -0.02 0.23 16 15 C 0.07 0.86 7.01 37.21 0.26 1.12 16 16 O -0.38 -4.65 10.42 -35.23 -0.37 -5.02 16 17 C 0.08 0.92 2.84 -26.68 -0.08 0.84 16 18 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 19 C 0.13 1.31 5.35 -4.04 -0.02 1.29 16 20 N -0.72 -6.52 5.48 -60.30 -0.33 -6.85 16 21 C 0.51 5.72 6.95 -10.99 -0.08 5.64 16 22 O -0.52 -8.24 16.53 -14.02 -0.23 -8.47 16 23 C 0.06 0.50 3.84 -27.31 -0.10 0.40 16 24 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 25 C -0.15 -0.81 6.61 -25.20 -0.17 -0.98 16 26 C -0.15 -0.79 7.15 -24.72 -0.18 -0.97 16 27 C 0.04 0.27 7.72 38.21 0.29 0.57 16 28 O -0.35 -3.71 10.74 -54.81 -0.59 -4.30 16 29 C 0.03 0.31 4.93 -3.71 -0.02 0.30 16 30 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 32 H 0.09 1.42 8.04 -51.93 -0.42 1.00 16 33 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.11 2.03 6.10 -51.93 -0.32 1.71 16 36 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.40 2.77 8.47 -40.82 -0.35 2.42 16 41 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.08 0.49 7.69 -51.93 -0.40 0.09 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 48 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 392.44 15.07 5.91 5.91 Total: -1.00 -34.69 392.44 -9.03 -43.71 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -7.65 Total: 9.51 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: -0.45 Total: 11.41 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.71 Total: -53.51 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -1.11 Total: -32.74 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.69 -9.03 -43.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715278235.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.855 kcal (2) G-P(sol) polarization free energy of solvation -34.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds