Wall clock time and date at job start Sat Apr 11 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86804 * 119.99644 * 2 1 4 4 H 1.48497 * 109.46862 * 269.99630 * 3 2 1 5 5 H 1.48501 * 109.47116 * 29.99558 * 3 2 1 6 6 H 1.48502 * 109.46694 * 149.99770 * 3 2 1 7 7 C 1.38947 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99621 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00282 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99943 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00138 * 359.72619 * 10 9 7 12 12 C 1.50703 * 119.99550 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46883 * 173.45372 * 12 10 9 14 14 C 1.47012 * 111.00007 * 293.63877 * 13 12 10 15 15 C 1.53104 * 109.25375 * 177.60692 * 14 13 12 16 16 O 1.43009 * 109.25942 * 56.84733 * 15 14 13 17 17 C 1.43011 * 113.73998 * 301.32658 * 16 15 14 18 18 H 1.08996 * 109.50676 * 298.69069 * 17 16 15 19 19 C 1.53004 * 109.50891 * 178.60656 * 17 16 15 20 20 N 1.46496 * 109.46987 * 64.99601 * 19 17 16 21 21 C 1.34778 * 120.00037 * 179.97438 * 20 19 17 22 22 O 1.21286 * 119.99670 * 0.02562 * 21 20 19 23 23 C 1.50695 * 120.00129 * 180.02562 * 21 20 19 24 24 H 1.09003 * 109.87091 * 303.99307 * 23 21 20 25 25 C 1.54099 * 109.88160 * 65.00325 * 23 21 20 26 26 C 1.54809 * 104.19090 * 121.45335 * 25 23 21 27 27 C 1.54995 * 102.08940 * 20.88145 * 26 25 23 28 28 O 1.43749 * 109.87995 * 182.83645 * 23 21 20 29 29 C 1.47013 * 110.99814 * 169.99964 * 13 12 10 30 30 H 0.96998 * 120.00271 * 0.02562 * 1 2 3 31 31 H 0.97004 * 119.99851 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47264 * 293.45519 * 12 10 9 33 33 H 1.09003 * 109.47502 * 53.45557 * 12 10 9 34 34 H 1.08997 * 109.50411 * 297.53599 * 14 13 12 35 35 H 1.08998 * 109.50684 * 57.63224 * 14 13 12 36 36 H 1.09002 * 109.49986 * 176.78083 * 15 14 13 37 37 H 1.08996 * 109.50669 * 296.86599 * 15 14 13 38 38 H 1.08993 * 109.47011 * 185.00249 * 19 17 16 39 39 H 1.09007 * 109.46487 * 305.00119 * 19 17 16 40 40 H 0.97003 * 120.00485 * 0.02562 * 20 19 17 41 41 H 1.08997 * 110.48638 * 240.13308 * 25 23 21 42 42 H 1.08998 * 110.48465 * 2.64370 * 25 23 21 43 43 H 1.08999 * 110.90728 * 139.07376 * 26 25 23 44 44 H 1.09001 * 110.90664 * 262.68262 * 26 25 23 45 45 H 1.09004 * 110.61988 * 81.48131 * 27 26 25 46 46 H 1.09002 * 110.62048 * 204.31424 * 27 26 25 47 47 H 1.09001 * 109.50696 * 302.32715 * 29 13 12 48 48 H 1.09000 * 109.50768 * 62.46104 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 -0.0045 12 6 1.2439 -4.8629 0.0000 13 7 2.1908 -5.9749 -0.1578 14 6 2.8240 -5.9435 -1.4842 15 6 3.8441 -7.0809 -1.5838 16 8 3.1892 -8.3258 -1.3257 17 6 2.5621 -8.3912 -0.0421 18 1 3.3153 -8.2755 0.7373 19 6 1.8652 -9.7439 0.1178 20 7 2.8677 -10.8122 0.1217 21 6 2.4826 -12.0972 0.2522 22 8 1.3061 -12.3691 0.3661 23 6 3.5138 -13.1961 0.2568 24 1 4.1163 -13.1425 -0.6500 25 6 4.4192 -13.0600 1.4963 26 6 4.2467 -14.4058 2.2418 27 6 3.7258 -15.3358 1.1166 28 8 2.8642 -14.4757 0.3404 29 6 1.5290 -7.2672 0.0731 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 -0.0002 32 1 0.7077 -4.9733 0.9424 33 1 0.5326 -4.8715 -0.8259 34 1 2.0626 -6.0691 -2.2540 35 1 3.3289 -4.9877 -1.6240 36 1 4.2747 -7.0969 -2.5850 37 1 4.6348 -6.9259 -0.8498 38 1 1.3138 -9.7597 1.0578 39 1 1.1744 -9.8969 -0.7114 40 1 3.8087 -10.5948 0.0310 41 1 5.4578 -12.9203 1.1966 42 1 4.0884 -12.2304 2.1211 43 1 5.2016 -14.7611 2.6291 44 1 3.5128 -14.3155 3.0427 45 1 4.5525 -15.7016 0.5075 46 1 3.1625 -16.1689 1.5371 47 1 1.0893 -7.2778 1.0705 48 1 0.7469 -7.4139 -0.6718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715278235.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:04 Heat of formation + Delta-G solvation = -178.753271 kcal Electronic energy + Delta-G solvation = -29605.902233 eV Core-core repulsion = 25273.929645 eV Total energy + Delta-G solvation = -4331.972588 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.45101 -40.92758 -39.85409 -39.26151 -36.77751 -35.94862 -35.74810 -33.35803 -33.27747 -32.60535 -30.76626 -30.32263 -28.06683 -26.70813 -25.19424 -24.63187 -23.37404 -22.67030 -21.81359 -21.12343 -21.00156 -19.88387 -18.73239 -17.98510 -17.66643 -17.43900 -17.26093 -17.10914 -16.58672 -16.47873 -16.23112 -16.09114 -15.83509 -15.48042 -15.44971 -15.11161 -15.00314 -14.67378 -14.57550 -14.35855 -13.97401 -13.76110 -13.49237 -13.26653 -13.03780 -12.86502 -12.75616 -12.64487 -12.42329 -12.35503 -12.24749 -12.17469 -12.12333 -11.87201 -11.61369 -11.44232 -11.16907 -10.81238 -10.53634 -10.24692 -10.18818 -10.00440 -9.34492 -8.46669 -5.95406 1.37835 1.41962 1.50965 1.54484 1.84738 2.04436 2.27586 2.58113 2.67518 3.03991 3.20126 3.33583 3.48623 3.67672 3.77434 3.88886 3.89557 3.98391 4.04696 4.08638 4.16192 4.27856 4.31029 4.40035 4.42998 4.46900 4.49488 4.56455 4.61538 4.64028 4.73704 4.79483 4.87269 4.92062 4.93023 5.00328 5.01178 5.14915 5.31016 5.40857 5.76150 5.79250 5.95029 6.04740 6.13676 6.48216 6.59850 7.12628 7.16492 7.56002 8.11100 8.70647 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.034687 B = 0.001681 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.032809 B =16648.316702 C =16790.099326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.332 4.332 8 H 0.081 0.919 9 N -0.574 5.574 10 C 0.442 3.558 11 O -0.612 6.612 12 C 0.057 3.943 13 N -0.527 5.527 14 C 0.016 3.984 15 C 0.078 3.922 16 O -0.385 6.385 17 C 0.093 3.907 18 H 0.084 0.916 19 C 0.137 3.863 20 N -0.707 5.707 21 C 0.508 3.492 22 O -0.577 6.577 23 C 0.059 3.941 24 H 0.119 0.881 25 C -0.143 4.143 26 C -0.152 4.152 27 C 0.036 3.964 28 O -0.389 6.389 29 C 0.025 3.975 30 H 0.277 0.723 31 H 0.395 0.605 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.418 0.582 41 H 0.119 0.881 42 H 0.079 0.921 43 H 0.111 0.889 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.100 0.900 47 H 0.105 0.895 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.542 -26.535 1.738 27.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.461 4.461 8 H 0.099 0.901 9 N -0.212 5.212 10 C 0.229 3.771 11 O -0.498 6.498 12 C -0.074 4.074 13 N -0.252 5.252 14 C -0.112 4.112 15 C 0.001 3.999 16 O -0.304 6.304 17 C 0.034 3.966 18 H 0.102 0.898 19 C 0.012 3.988 20 N -0.361 5.361 21 C 0.295 3.705 22 O -0.456 6.456 23 C -0.002 4.002 24 H 0.136 0.864 25 C -0.181 4.181 26 C -0.189 4.189 27 C -0.040 4.040 28 O -0.308 6.308 29 C -0.104 4.104 30 H 0.086 0.914 31 H 0.229 0.771 32 H 0.132 0.868 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.135 0.865 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.255 0.745 41 H 0.137 0.863 42 H 0.098 0.902 43 H 0.129 0.871 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.118 0.882 47 H 0.123 0.877 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.527 -26.723 1.946 28.118 hybrid contribution -0.646 1.542 -0.509 1.748 sum 7.881 -25.180 1.437 26.424 Atomic orbital electron populations 1.69675 1.06864 1.29261 1.50402 1.26037 0.96515 1.02425 0.96326 0.84926 0.77901 0.76906 0.78596 1.19700 1.19695 1.19690 1.19663 0.92729 0.83918 1.49829 0.90135 1.41949 1.09305 1.04738 1.65183 1.20667 0.88308 0.85751 0.82329 1.90468 1.15480 1.87757 1.56101 1.21761 0.93335 0.88588 1.03725 1.61750 1.31477 1.01682 1.30300 1.22839 0.98237 1.01266 0.88851 1.22619 0.93237 0.81187 1.02849 1.87956 1.71833 1.35662 1.34990 1.22286 0.94759 0.92834 0.86704 0.89834 1.21241 0.90888 0.83716 1.02938 1.45675 1.11712 1.04862 1.73831 1.21078 0.89771 0.84263 0.75380 1.90705 1.20639 1.83757 1.50490 1.22811 0.91614 0.83358 1.02443 0.86388 1.23015 1.01165 0.99509 0.94399 1.23162 1.03491 0.94151 0.98140 1.23892 0.94446 0.93799 0.91857 1.88980 1.46013 1.21126 1.74637 1.22791 0.96014 0.88065 1.03492 0.91356 0.77109 0.86797 0.91794 0.94594 0.90846 0.86493 0.92129 0.89065 0.91771 0.74515 0.86312 0.90208 0.87050 0.91425 0.89735 0.88228 0.87672 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.35 13.05 21.66 0.28 -49.07 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 42.43 29.55 68.60 2.03 44.46 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.33 -18.55 9.68 84.04 0.81 -17.74 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.57 -28.99 5.29 -306.98 -1.62 -30.61 16 10 C 0.44 20.47 7.35 87.66 0.64 21.12 16 11 O -0.61 -32.57 14.25 -3.05 -0.04 -32.61 16 12 C 0.06 1.92 5.45 85.56 0.47 2.38 16 13 N -0.53 -16.15 4.42 -899.75 -3.98 -20.12 16 14 C 0.02 0.49 5.30 86.32 0.46 0.95 16 15 C 0.08 1.84 7.01 72.02 0.50 2.34 16 16 O -0.39 -8.51 10.42 -148.98 -1.55 -10.06 16 17 C 0.09 1.81 2.84 30.63 0.09 1.90 16 18 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 19 C 0.14 2.54 5.35 86.38 0.46 3.00 16 20 N -0.71 -11.66 5.48 -463.06 -2.54 -14.20 16 21 C 0.51 10.98 6.95 87.66 0.61 11.59 16 22 O -0.58 -18.52 16.53 15.67 0.26 -18.26 16 23 C 0.06 0.89 3.84 30.22 0.12 1.00 16 24 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 25 C -0.14 -1.20 6.61 31.58 0.21 -0.99 16 26 C -0.15 -1.24 7.15 31.89 0.23 -1.01 16 27 C 0.04 0.40 7.72 72.66 0.56 0.96 16 28 O -0.39 -8.08 10.74 -130.26 -1.40 -9.48 16 29 C 0.02 0.56 4.93 86.32 0.43 0.98 16 30 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 31 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 32 H 0.11 3.33 8.04 -2.39 -0.02 3.31 16 33 H 0.06 1.98 8.12 -2.39 -0.02 1.96 16 34 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 2.79 6.10 -2.39 -0.01 2.78 16 36 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.42 4.68 8.47 -92.71 -0.79 3.90 16 41 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.08 0.75 7.69 -2.39 -0.02 0.73 16 43 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 46 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.11 2.02 8.09 -2.39 -0.02 2.00 16 48 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -77.27 392.44 -3.04 -80.31 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: -0.53 Total: 33.40 kcal Atomic # 6 Polarization: 20.20 SS G_CDS: 6.05 Total: 26.26 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -7.85 Total: -114.00 kcal Atomic # 8 Polarization: -67.69 SS G_CDS: -2.73 Total: -70.42 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -77.27 -3.04 -80.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715278235.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.441 kcal (2) G-P(sol) polarization free energy of solvation -77.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds