Wall clock time and date at job start Sat Apr 11 2020 06:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47352 * 2 1 4 4 C 1.52998 * 109.47419 * 120.00331 * 2 1 3 5 5 H 1.09005 * 109.47313 * 181.02654 * 4 2 1 6 6 C 1.52995 * 109.46967 * 301.02401 * 4 2 1 7 7 N 1.46502 * 109.47181 * 174.99962 * 6 4 2 8 8 C 1.34778 * 120.00099 * 179.97438 * 7 6 4 9 9 O 1.21743 * 119.99841 * 0.02562 * 8 7 6 10 10 C 1.46377 * 119.99845 * 180.27691 * 8 7 6 11 11 C 1.33965 * 119.23435 * 359.45753 * 10 8 7 12 12 O 1.35002 * 121.68950 * 180.08412 * 11 10 8 13 13 C 1.43239 * 116.83341 * 343.35314 * 12 11 10 14 14 C 1.53553 * 108.08948 * 45.23700 * 13 12 11 15 15 O 1.36214 * 119.22977 * 179.73028 * 10 8 7 16 16 N 1.46896 * 109.47276 * 61.02259 * 4 2 1 17 17 C 1.46901 * 110.99946 * 86.40928 * 16 4 2 18 18 C 1.50698 * 109.47435 * 185.24422 * 17 16 4 19 19 O 1.21294 * 119.99903 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00484 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00184 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99957 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99798 * 179.97438 * 21 20 18 24 24 N 1.31405 * 119.99944 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99622 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47417 * 60.00151 * 25 23 21 27 27 H 1.48499 * 109.46700 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47022 * 300.00004 * 25 23 21 29 29 H 1.09000 * 109.46988 * 299.99528 * 1 2 3 30 30 H 1.08997 * 109.47638 * 60.00137 * 1 2 3 31 31 H 1.09003 * 109.47334 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46988 * 240.00472 * 2 1 3 33 33 H 1.08999 * 109.47383 * 174.51400 * 3 2 1 34 34 H 1.09000 * 109.47156 * 294.52069 * 3 2 1 35 35 H 1.09001 * 109.46975 * 54.51278 * 3 2 1 36 36 H 1.08994 * 109.47563 * 55.00088 * 6 4 2 37 37 H 1.09001 * 109.47550 * 294.99912 * 6 4 2 38 38 H 0.97001 * 119.99870 * 0.02562 * 7 6 4 39 39 H 1.08008 * 119.15585 * 0.36875 * 11 10 8 40 40 H 1.09004 * 109.73701 * 285.58847 * 13 12 11 41 41 H 1.08999 * 109.74317 * 164.88691 * 13 12 11 42 42 H 1.08999 * 109.75375 * 182.21975 * 14 13 12 43 43 H 1.08994 * 109.75023 * 61.47332 * 14 13 12 44 44 H 1.00895 * 111.00278 * 210.35903 * 16 4 2 45 45 H 1.08997 * 109.47226 * 305.24869 * 17 16 4 46 46 H 1.09000 * 109.47105 * 65.24635 * 17 16 4 47 47 H 0.97005 * 119.99675 * 0.02562 * 20 18 17 48 48 H 0.97005 * 119.99580 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1299 -0.7054 1.2584 6 6 1.5091 -0.0152 2.4983 7 7 1.8977 -0.7733 3.6901 8 6 1.5379 -0.3368 4.9135 9 8 0.8894 0.6872 5.0280 10 6 1.9313 -1.0910 6.1046 11 6 2.6397 -2.2189 5.9605 12 8 3.0272 -2.9539 7.0245 13 6 2.9796 -2.3132 8.3048 14 6 1.6412 -1.5687 8.4158 15 8 1.5639 -0.6326 7.3336 16 7 1.5707 -2.1132 1.2368 17 6 2.4913 -2.9725 0.4805 18 6 1.9145 -4.3611 0.3801 19 8 0.8417 -4.6103 0.8883 20 7 2.5906 -5.3261 -0.2742 21 6 2.0655 -6.5892 -0.3659 22 1 1.1103 -6.8111 0.0865 23 6 2.7623 -7.5839 -1.0410 24 7 3.9248 -7.3140 -1.5911 25 14 2.0465 -9.3047 -1.1666 26 1 0.7374 -9.2466 -1.8651 27 1 2.9776 -10.1735 -1.9304 28 1 1.8558 -9.8622 0.1966 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1256 1.4441 0.0982 34 1 1.7590 1.9272 -0.9350 35 1 1.5987 1.9839 0.8368 36 1 0.4222 0.0475 2.4460 37 1 1.9286 0.9893 2.5538 38 1 2.4147 -1.5889 3.5989 39 1 2.9116 -2.5462 4.9678 40 1 3.8034 -1.6048 8.3928 41 1 3.0510 -3.0616 9.0939 42 1 1.5929 -1.0376 9.3665 43 1 0.8176 -2.2793 8.3478 44 1 1.4417 -2.4597 2.1756 45 1 2.6305 -2.5637 -0.5203 46 1 3.4526 -3.0146 0.9927 47 1 3.4487 -5.1269 -0.6803 48 1 4.4114 -8.0086 -2.0620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715518051.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:08 Heat of formation + Delta-G solvation = -122.238095 kcal Electronic energy + Delta-G solvation = -30315.343767 eV Core-core repulsion = 25985.821861 eV Total energy + Delta-G solvation = -4329.521906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.39712 -39.84449 -38.57656 -37.66132 -37.16968 -34.55686 -34.09641 -33.23575 -32.38382 -31.23010 -29.69555 -28.14058 -27.11266 -26.11873 -25.60459 -24.10409 -23.35653 -22.01883 -19.97354 -19.49439 -19.23710 -18.62496 -18.41959 -17.90109 -16.79213 -16.51366 -16.06844 -15.94944 -15.45302 -15.18844 -15.11151 -14.91291 -14.52630 -14.50802 -14.35834 -14.09567 -13.86351 -13.77734 -13.53716 -13.27764 -13.05379 -12.58269 -12.42033 -12.15205 -11.96856 -11.80278 -11.58854 -11.49233 -11.37286 -11.07306 -11.03376 -10.91724 -10.80924 -10.46085 -10.41239 -10.23210 -10.10038 -9.51950 -9.31952 -8.51357 -8.50089 -8.12016 -7.98498 -6.43995 -3.84801 1.03184 2.31573 2.79561 3.05078 3.18577 3.24565 3.28843 3.43285 3.87604 3.92762 3.99451 4.24206 4.40042 4.46462 4.54392 4.56428 4.77389 4.84061 4.93436 4.98969 5.12517 5.14568 5.21560 5.24788 5.29774 5.45347 5.53060 5.59126 5.66176 5.73998 5.81897 5.87689 5.95435 6.01195 6.08691 6.21447 6.23303 6.38645 6.43567 6.62371 6.91844 7.09898 7.22296 7.50613 7.53001 7.96198 8.03651 8.58843 9.15796 9.51771 10.03275 10.73601 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008472 B = 0.003025 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3304.078766 B = 9253.151853 C =11941.608581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.152 4.152 4 C 0.080 3.920 5 H 0.051 0.949 6 C 0.116 3.884 7 N -0.724 5.724 8 C 0.580 3.420 9 O -0.522 6.522 10 C -0.074 4.074 11 C 0.014 3.986 12 O -0.296 6.296 13 C 0.013 3.987 14 C 0.018 3.982 15 O -0.286 6.286 16 N -0.660 5.660 17 C 0.049 3.951 18 C 0.440 3.560 19 O -0.580 6.580 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.396 0.604 39 H 0.178 0.822 40 H 0.082 0.918 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.079 0.921 44 H 0.345 0.655 45 H 0.088 0.912 46 H 0.043 0.957 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.526 14.395 13.380 19.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 C -0.210 4.210 4 C -0.031 4.031 5 H 0.069 0.931 6 C -0.007 4.007 7 N -0.380 5.380 8 C 0.366 3.634 9 O -0.398 6.398 10 C -0.123 4.123 11 C -0.053 4.053 12 O -0.208 6.208 13 C -0.062 4.062 14 C -0.058 4.058 15 O -0.200 6.200 16 N -0.294 5.294 17 C -0.084 4.084 18 C 0.225 3.775 19 O -0.464 6.464 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.178 4.178 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.232 0.768 39 H 0.194 0.806 40 H 0.100 0.900 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.098 0.902 44 H 0.166 0.834 45 H 0.106 0.894 46 H 0.061 0.939 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.032 14.926 13.236 19.976 hybrid contribution 1.353 -1.388 0.296 1.961 sum 2.385 13.538 13.532 19.289 Atomic orbital electron populations 1.21811 0.94304 1.03434 1.00571 1.21026 0.97159 0.94796 0.97014 1.21942 1.00787 0.96235 1.02032 1.21856 0.97403 0.89476 0.94347 0.93102 1.21816 1.02056 0.95046 0.81740 1.45877 1.57558 1.28913 1.05678 1.17023 0.79873 0.84603 0.81868 1.90853 1.38605 1.24080 1.86309 1.20314 1.05358 0.99215 0.87382 1.23172 0.96590 0.92950 0.92563 1.86137 1.80715 1.39466 1.14529 1.23757 0.98290 0.99309 0.84840 1.23693 0.97692 0.93771 0.90663 1.86417 1.83275 1.37095 1.13193 1.59995 1.48795 0.99803 1.20825 1.21764 0.93346 0.93592 0.99676 1.19775 0.87185 0.85788 0.84740 1.90539 1.22598 1.82150 1.51119 1.41857 1.20669 1.09249 1.48225 1.19649 1.05396 0.85179 1.32729 0.87977 1.25249 0.95723 1.00266 0.96609 1.69600 1.13572 1.35017 1.36139 0.85929 0.78586 0.81281 0.78508 1.19869 1.20987 1.19910 0.93063 0.93520 0.90530 0.90559 0.92841 0.92433 0.92450 0.89456 0.90270 0.76755 0.80564 0.90000 0.85936 0.85973 0.90239 0.83396 0.89357 0.93885 0.77513 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.68 37.15 0.32 -1.37 16 2 C -0.08 -0.87 2.84 -90.62 -0.26 -1.12 16 3 C -0.15 -1.35 8.71 37.16 0.32 -1.02 16 4 C 0.08 0.88 2.01 -67.72 -0.14 0.74 16 5 H 0.05 0.51 7.84 -51.93 -0.41 0.11 16 6 C 0.12 1.29 4.60 -4.04 -0.02 1.28 16 7 N -0.72 -8.04 4.91 -61.71 -0.30 -8.34 16 8 C 0.58 7.90 7.73 -12.99 -0.10 7.80 16 9 O -0.52 -9.01 16.92 -10.06 -0.17 -9.18 16 10 C -0.07 -0.90 6.61 -37.81 -0.25 -1.15 16 11 C 0.01 0.14 10.58 29.23 0.31 0.45 16 12 O -0.30 -3.00 10.47 -30.84 -0.32 -3.32 16 13 C 0.01 0.09 7.30 37.44 0.27 0.36 16 14 C 0.02 0.14 7.31 37.44 0.27 0.41 16 15 O -0.29 -3.56 10.28 -45.76 -0.47 -4.03 16 16 N -0.66 -9.47 5.11 -108.00 -0.55 -10.02 16 17 C 0.05 0.78 5.93 -4.98 -0.03 0.75 16 18 C 0.44 9.85 7.83 -10.99 -0.09 9.77 16 19 O -0.58 -15.16 15.89 5.55 0.09 -15.07 16 20 N -0.56 -13.76 5.29 -10.96 -0.06 -13.81 16 21 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 22 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.09 13.05 55.50 0.72 -23.36 16 25 Si 0.93 20.78 29.55 -169.99 -5.02 15.75 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 H 0.05 0.58 6.30 -51.93 -0.33 0.25 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 1.11 7.63 -51.93 -0.40 0.71 16 32 H 0.08 0.89 7.46 -51.93 -0.39 0.50 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.50 6.87 -51.93 -0.36 0.14 16 36 H 0.09 1.10 6.15 -51.93 -0.32 0.78 16 37 H 0.08 0.84 6.86 -51.93 -0.36 0.48 16 38 H 0.40 3.72 5.24 -40.82 -0.21 3.51 16 39 H 0.18 1.47 6.08 -52.48 -0.32 1.15 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.12 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.12 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.35 5.05 6.61 -39.29 -0.26 4.79 16 45 H 0.09 1.32 7.42 -51.93 -0.39 0.93 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 48 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 391.04 15.07 5.89 5.89 Total: -1.00 -34.76 391.04 -6.75 -41.51 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -6.94 Total: 14.91 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 0.38 Total: 9.07 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: -0.19 Total: -55.54 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.88 Total: -31.60 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.76 -6.75 -41.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715518051.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.725 kcal (2) G-P(sol) polarization free energy of solvation -34.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds