Wall clock time and date at job start Sat Apr 11 2020 06:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99942 * 2 1 4 4 H 1.48497 * 109.46963 * 270.00318 * 3 2 1 5 5 H 1.48498 * 109.47029 * 30.00136 * 3 2 1 6 6 H 1.48497 * 109.46805 * 150.00078 * 3 2 1 7 7 C 1.38811 * 119.99740 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00087 * 359.97438 * 7 2 1 9 9 N 1.36933 * 119.99902 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00249 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47414 * 180.02562 * 10 9 7 12 12 O 1.42903 * 109.45896 * 299.97185 * 11 10 9 13 13 C 1.53041 * 109.46208 * 179.97438 * 11 10 9 14 14 C 1.53189 * 109.31234 * 178.61093 * 13 11 10 15 15 N 1.46926 * 108.77479 * 54.63917 * 14 13 11 16 16 C 1.34775 * 120.63681 * 126.37176 * 15 14 13 17 17 O 1.21288 * 119.99876 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00627 * 179.97438 * 16 15 14 19 19 N 1.46496 * 109.47511 * 179.97438 * 18 16 15 20 20 C 1.46094 * 118.73317 * 89.99395 * 19 18 16 21 21 C 1.53015 * 109.92553 * 161.66342 * 20 19 18 22 22 O 1.43246 * 108.80411 * 49.08754 * 21 20 19 23 23 C 1.42938 * 113.00133 * 291.87691 * 22 21 20 24 24 C 1.33871 * 118.72898 * 270.02044 * 19 18 16 25 25 O 1.21280 * 118.83057 * 1.86249 * 24 19 18 26 26 C 1.46927 * 118.73517 * 306.63580 * 15 14 13 27 27 C 1.52759 * 109.00611 * 53.31396 * 26 15 14 28 28 H 0.97003 * 120.00447 * 359.97438 * 1 2 3 29 29 H 0.97004 * 120.00208 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47555 * 59.99783 * 10 9 7 31 31 H 1.08999 * 109.46859 * 299.99436 * 10 9 7 32 32 H 0.96700 * 114.00191 * 60.02391 * 12 11 10 33 33 H 1.09000 * 109.49548 * 58.66385 * 13 11 10 34 34 H 1.09001 * 109.49733 * 298.56214 * 13 11 10 35 35 H 1.09000 * 109.59126 * 294.84861 * 14 13 11 36 36 H 1.09004 * 109.58841 * 174.42079 * 14 13 11 37 37 H 1.09002 * 109.47189 * 59.99235 * 18 16 15 38 38 H 1.08997 * 109.46705 * 299.99472 * 18 16 15 39 39 H 1.09005 * 109.38974 * 41.52524 * 20 19 18 40 40 H 1.08997 * 109.39362 * 281.80890 * 20 19 18 41 41 H 1.09002 * 109.60384 * 168.92264 * 21 20 19 42 42 H 1.08997 * 109.60702 * 289.24714 * 21 20 19 43 43 H 1.08998 * 109.28587 * 289.27430 * 23 22 21 44 44 H 1.08998 * 109.43732 * 169.54348 * 23 22 21 45 45 H 1.09004 * 109.58435 * 173.14478 * 26 15 14 46 46 H 1.08997 * 109.59355 * 293.57176 * 26 15 14 47 47 H 1.09000 * 109.56507 * 185.54710 * 27 26 15 48 48 H 1.09006 * 109.35956 * 65.49994 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 -0.0011 10 6 4.1120 -2.4709 -0.0022 11 6 5.6162 -2.1914 -0.0020 12 8 5.9613 -1.4415 -1.1685 13 6 6.3812 -3.5169 -0.0025 14 6 7.8862 -3.2333 -0.0373 15 7 8.2253 -2.3414 1.0800 16 6 9.1959 -2.6739 1.9540 17 8 9.7985 -3.7182 1.8226 18 6 9.5324 -1.7482 3.0945 19 7 10.6115 -2.3319 3.8952 20 6 11.9947 -2.0201 3.5432 21 6 12.9161 -2.3304 4.7248 22 8 12.6200 -3.6459 5.2082 23 6 11.3317 -3.7391 5.8204 24 6 10.2921 -3.1308 4.9208 25 8 9.1224 -3.3720 5.1319 26 6 7.4821 -1.0829 1.2298 27 6 5.9854 -1.3879 1.2471 28 1 -0.4851 0.8400 0.0004 29 1 3.8646 -0.3622 -0.0014 30 1 3.8484 -3.0419 -0.8924 31 1 3.8491 -3.0430 0.8876 32 1 5.5126 -0.5875 -1.2341 33 1 6.1003 -4.0986 -0.8804 34 1 6.1375 -4.0779 0.8997 35 1 8.1458 -2.7524 -0.9804 36 1 8.4368 -4.1688 0.0620 37 1 8.6512 -1.6076 3.7205 38 1 9.8539 -0.7852 2.6980 39 1 12.0743 -0.9629 3.2900 40 1 12.2936 -2.6202 2.6837 41 1 13.9555 -2.2856 4.3996 42 1 12.7498 -1.6028 5.5191 43 1 11.3454 -3.2057 6.7709 44 1 11.0893 -4.7869 5.9976 45 1 7.7660 -0.6000 2.1649 46 1 7.7080 -0.4230 0.3922 47 1 5.4227 -0.4545 1.2588 48 1 5.7454 -1.9690 2.1376 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717319642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:22 Heat of formation + Delta-G solvation = -127.563560 kcal Electronic energy + Delta-G solvation = -31199.679614 eV Core-core repulsion = 26869.926779 eV Total energy + Delta-G solvation = -4329.752835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.27176 -40.22391 -38.63471 -38.01312 -35.88400 -35.51348 -34.19394 -32.27269 -31.57068 -30.76444 -30.70175 -29.47276 -27.29949 -26.20148 -24.37696 -23.64517 -23.50491 -21.74555 -20.60227 -19.68782 -18.95735 -18.16304 -18.11142 -17.73391 -17.34310 -16.38781 -16.09657 -15.86635 -15.82530 -15.28783 -15.06786 -14.91579 -14.61191 -14.46520 -14.26283 -13.91076 -13.78458 -13.65436 -13.39473 -13.24443 -13.07706 -12.70389 -12.47211 -12.38804 -12.15813 -12.05230 -11.81905 -11.71141 -11.44516 -11.22010 -11.18764 -11.00979 -10.96287 -10.35621 -10.31538 -10.18479 -9.85025 -9.68239 -9.59669 -9.10154 -9.00673 -8.69241 -7.35070 -5.84464 -3.21801 2.06018 2.29032 2.45137 2.94539 3.23605 3.25193 3.28781 3.36763 3.85167 4.23696 4.25243 4.36081 4.44743 4.49112 4.58539 4.62056 4.70901 4.75679 4.81599 4.90817 4.95587 4.99371 5.04327 5.11205 5.25224 5.30139 5.35700 5.41841 5.46219 5.56428 5.67788 5.71222 5.82776 5.87313 5.98909 6.13173 6.23689 6.26737 6.43134 6.51963 6.57928 6.88653 7.25195 7.64682 7.80760 7.92794 8.01291 8.32960 9.09787 9.81576 9.99339 11.33830 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019971 B = 0.002501 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.725999 B =11193.312168 C =11573.239383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.752 5.752 10 C 0.133 3.867 11 C 0.127 3.873 12 O -0.558 6.558 13 C -0.117 4.117 14 C 0.119 3.881 15 N -0.605 5.605 16 C 0.501 3.499 17 O -0.536 6.536 18 C 0.091 3.909 19 N -0.588 5.588 20 C 0.079 3.921 21 C 0.045 3.955 22 O -0.368 6.368 23 C 0.054 3.946 24 C 0.492 3.508 25 O -0.534 6.534 26 C 0.111 3.889 27 C -0.162 4.162 28 H 0.260 0.740 29 H 0.356 0.644 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.377 0.623 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.117 0.883 42 H 0.064 0.936 43 H 0.091 0.909 44 H 0.132 0.868 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.644 -0.889 8.222 29.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.006 3.994 11 C 0.086 3.914 12 O -0.364 6.364 13 C -0.155 4.155 14 C -0.003 4.003 15 N -0.339 5.339 16 C 0.288 3.712 17 O -0.413 6.413 18 C -0.036 4.036 19 N -0.321 5.321 20 C -0.044 4.044 21 C -0.032 4.032 22 O -0.286 6.286 23 C -0.026 4.026 24 C 0.280 3.720 25 O -0.410 6.410 26 C -0.012 4.012 27 C -0.200 4.200 28 H 0.071 0.929 29 H 0.189 0.811 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.225 0.775 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.126 0.874 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.135 0.865 42 H 0.083 0.917 43 H 0.109 0.891 44 H 0.150 0.850 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.104 0.896 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 28.639 -2.352 8.159 29.871 hybrid contribution -0.292 2.100 0.022 2.120 sum 28.347 -0.252 8.181 29.505 Atomic orbital electron populations 1.69696 1.05106 1.25891 1.57226 1.24697 0.95264 0.97200 1.01946 0.86561 0.79046 0.85095 0.77765 1.20904 1.21612 1.20566 1.19031 0.80373 0.94837 1.43297 0.89145 1.42634 1.04201 1.01726 1.91370 1.21294 0.88634 0.89833 0.99654 1.21370 0.94505 0.91274 0.84292 1.86419 1.70683 1.35367 1.43938 1.21846 0.94287 0.95796 1.03577 1.21525 0.95314 0.94746 0.88686 1.48133 1.35716 1.21834 1.28261 1.20988 0.79811 0.87433 0.83019 1.90689 1.51665 1.25013 1.73941 1.21453 0.93439 0.95929 0.92747 1.47058 1.06623 1.48583 1.29863 1.22243 0.80391 1.02096 0.99654 1.23003 1.00116 0.84975 0.95095 1.88213 1.33103 1.29763 1.77501 1.22815 0.80768 1.04242 0.94741 1.21022 0.91073 0.78441 0.81505 1.90780 1.19574 1.59105 1.71566 1.21664 0.92067 0.85316 1.02146 1.22512 0.94986 1.02627 0.99894 0.92949 0.81058 0.94389 0.94729 0.77484 0.89692 0.90209 0.90561 0.89357 0.86449 0.87362 0.89465 0.90060 0.86490 0.91736 0.89075 0.85014 0.90259 0.90440 0.89590 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.79 13.97 55.49 0.78 -28.01 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.89 20.94 27.74 -169.99 -4.71 16.23 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -5.96 6.52 56.52 0.37 -5.59 16 7 C -0.25 -6.77 10.47 -15.06 -0.16 -6.92 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 N -0.75 -16.73 4.87 -59.91 -0.29 -17.02 16 10 C 0.13 2.49 5.40 -4.05 -0.02 2.46 16 11 C 0.13 1.86 0.71 -90.58 -0.06 1.79 16 12 O -0.56 -8.20 11.71 -35.23 -0.41 -8.61 16 13 C -0.12 -1.55 5.11 -26.61 -0.14 -1.69 16 14 C 0.12 1.52 6.20 -3.71 -0.02 1.50 16 15 N -0.61 -7.37 2.98 -173.03 -0.52 -7.88 16 16 C 0.50 6.53 7.76 -10.99 -0.09 6.44 16 17 O -0.54 -8.87 15.84 5.55 0.09 -8.79 16 18 C 0.09 0.88 4.12 -5.20 -0.02 0.86 16 19 N -0.59 -5.75 2.32 -175.79 -0.41 -6.16 16 20 C 0.08 0.50 6.68 -4.25 -0.03 0.47 16 21 C 0.05 0.22 6.89 37.17 0.26 0.48 16 22 O -0.37 -3.01 10.86 -35.23 -0.38 -3.39 16 23 C 0.05 0.44 6.98 35.83 0.25 0.69 16 24 C 0.49 5.69 7.58 -11.56 -0.09 5.61 16 25 O -0.53 -8.28 16.39 5.56 0.09 -8.19 16 26 C 0.11 1.18 6.08 -3.93 -0.02 1.15 16 27 C -0.16 -2.16 4.91 -26.84 -0.13 -2.29 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 29 H 0.36 7.40 3.44 -40.82 -0.14 7.26 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.38 5.27 7.85 45.56 0.36 5.63 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 0.96 7.81 -51.93 -0.41 0.55 16 36 H 0.09 1.19 7.01 -51.93 -0.36 0.83 16 37 H 0.12 1.22 6.83 -51.93 -0.35 0.86 16 38 H 0.11 0.66 7.74 -51.93 -0.40 0.25 16 39 H 0.09 0.30 7.99 -51.93 -0.42 -0.12 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.22 8.10 -51.93 -0.42 -0.20 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.13 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.08 0.65 5.94 -51.93 -0.31 0.34 16 46 H 0.08 0.77 7.81 -51.93 -0.41 0.37 16 47 H 0.09 1.23 6.82 -51.93 -0.35 0.87 16 48 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -37.32 378.76 -7.04 -44.36 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -6.61 Total: 11.17 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -0.37 Total: 10.60 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.44 Total: -59.08 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.62 Total: -28.97 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.71 Total: 16.23 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.32 -7.04 -44.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717319642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.206 kcal (2) G-P(sol) polarization free energy of solvation -37.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds