Wall clock time and date at job start Sat Apr 11 2020 06:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99942 * 2 1 4 4 H 1.48497 * 109.46963 * 270.00318 * 3 2 1 5 5 H 1.48498 * 109.47029 * 30.00136 * 3 2 1 6 6 H 1.48497 * 109.46805 * 150.00078 * 3 2 1 7 7 C 1.38811 * 119.99740 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00087 * 359.97438 * 7 2 1 9 9 N 1.36933 * 119.99902 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00249 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47414 * 180.02562 * 10 9 7 12 12 O 1.42903 * 109.45896 * 299.97185 * 11 10 9 13 13 C 1.53041 * 109.46208 * 179.97438 * 11 10 9 14 14 C 1.53189 * 109.31234 * 178.61093 * 13 11 10 15 15 N 1.46926 * 108.77479 * 54.63917 * 14 13 11 16 16 C 1.34775 * 120.63681 * 126.37176 * 15 14 13 17 17 O 1.21288 * 119.99876 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00627 * 179.97438 * 16 15 14 19 19 N 1.46496 * 109.47511 * 179.97438 * 18 16 15 20 20 C 1.46094 * 118.73317 * 89.99395 * 19 18 16 21 21 C 1.53015 * 109.92553 * 161.66342 * 20 19 18 22 22 O 1.43246 * 108.80411 * 49.08754 * 21 20 19 23 23 C 1.42938 * 113.00133 * 291.87691 * 22 21 20 24 24 C 1.33871 * 118.72898 * 270.02044 * 19 18 16 25 25 O 1.21280 * 118.83057 * 1.86249 * 24 19 18 26 26 C 1.46927 * 118.73517 * 306.63580 * 15 14 13 27 27 C 1.52759 * 109.00611 * 53.31396 * 26 15 14 28 28 H 0.97003 * 120.00447 * 359.97438 * 1 2 3 29 29 H 0.97004 * 120.00208 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47555 * 59.99783 * 10 9 7 31 31 H 1.08999 * 109.46859 * 299.99436 * 10 9 7 32 32 H 0.96700 * 114.00191 * 60.02391 * 12 11 10 33 33 H 1.09000 * 109.49548 * 58.66385 * 13 11 10 34 34 H 1.09001 * 109.49733 * 298.56214 * 13 11 10 35 35 H 1.09000 * 109.59126 * 294.84861 * 14 13 11 36 36 H 1.09004 * 109.58841 * 174.42079 * 14 13 11 37 37 H 1.09002 * 109.47189 * 59.99235 * 18 16 15 38 38 H 1.08997 * 109.46705 * 299.99472 * 18 16 15 39 39 H 1.09005 * 109.38974 * 41.52524 * 20 19 18 40 40 H 1.08997 * 109.39362 * 281.80890 * 20 19 18 41 41 H 1.09002 * 109.60384 * 168.92264 * 21 20 19 42 42 H 1.08997 * 109.60702 * 289.24714 * 21 20 19 43 43 H 1.08998 * 109.28587 * 289.27430 * 23 22 21 44 44 H 1.08998 * 109.43732 * 169.54348 * 23 22 21 45 45 H 1.09004 * 109.58435 * 173.14478 * 26 15 14 46 46 H 1.08997 * 109.59355 * 293.57176 * 26 15 14 47 47 H 1.09000 * 109.56507 * 185.54710 * 27 26 15 48 48 H 1.09006 * 109.35956 * 65.49994 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 -0.0011 10 6 4.1120 -2.4709 -0.0022 11 6 5.6162 -2.1914 -0.0020 12 8 5.9613 -1.4415 -1.1685 13 6 6.3812 -3.5169 -0.0025 14 6 7.8862 -3.2333 -0.0373 15 7 8.2253 -2.3414 1.0800 16 6 9.1959 -2.6739 1.9540 17 8 9.7985 -3.7182 1.8226 18 6 9.5324 -1.7482 3.0945 19 7 10.6115 -2.3319 3.8952 20 6 11.9947 -2.0201 3.5432 21 6 12.9161 -2.3304 4.7248 22 8 12.6200 -3.6459 5.2082 23 6 11.3317 -3.7391 5.8204 24 6 10.2921 -3.1308 4.9208 25 8 9.1224 -3.3720 5.1319 26 6 7.4821 -1.0829 1.2298 27 6 5.9854 -1.3879 1.2471 28 1 -0.4851 0.8400 0.0004 29 1 3.8646 -0.3622 -0.0014 30 1 3.8484 -3.0419 -0.8924 31 1 3.8491 -3.0430 0.8876 32 1 5.5126 -0.5875 -1.2341 33 1 6.1003 -4.0986 -0.8804 34 1 6.1375 -4.0779 0.8997 35 1 8.1458 -2.7524 -0.9804 36 1 8.4368 -4.1688 0.0620 37 1 8.6512 -1.6076 3.7205 38 1 9.8539 -0.7852 2.6980 39 1 12.0743 -0.9629 3.2900 40 1 12.2936 -2.6202 2.6837 41 1 13.9555 -2.2856 4.3996 42 1 12.7498 -1.6028 5.5191 43 1 11.3454 -3.2057 6.7709 44 1 11.0893 -4.7869 5.9976 45 1 7.7660 -0.6000 2.1649 46 1 7.7080 -0.4230 0.3922 47 1 5.4227 -0.4545 1.2588 48 1 5.7454 -1.9690 2.1376 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717319642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:21 Heat of formation + Delta-G solvation = -158.556009 kcal Electronic energy + Delta-G solvation = -31201.023547 eV Core-core repulsion = 26869.926779 eV Total energy + Delta-G solvation = -4331.096769 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.06665 -41.19742 -39.74687 -38.74228 -36.99359 -36.38993 -35.87628 -33.69505 -33.00570 -32.05492 -31.33105 -30.27598 -28.60093 -27.10564 -25.31098 -24.80116 -24.53658 -23.25492 -21.75785 -20.57349 -20.03757 -19.79598 -18.81860 -18.62851 -18.10582 -17.38037 -17.08765 -16.78381 -16.71221 -16.51268 -16.14271 -16.09627 -15.80884 -15.55612 -15.25165 -14.95016 -14.81373 -14.75160 -14.47030 -14.39599 -14.30095 -13.90289 -13.61793 -13.50956 -13.20668 -13.17612 -12.84024 -12.78627 -12.73835 -12.33629 -12.31021 -12.22697 -12.12810 -11.89710 -11.64039 -11.42649 -11.20321 -11.03426 -10.83078 -10.53530 -9.89594 -9.71921 -9.36684 -8.03975 -5.40669 1.23698 1.35751 1.44576 1.49161 1.51138 1.61963 2.06225 2.48439 2.79043 3.16308 3.25871 3.29088 3.38232 3.42838 3.65625 3.79397 3.79594 3.92320 3.96648 4.05484 4.15475 4.19060 4.23472 4.30113 4.34729 4.38495 4.46037 4.51311 4.64042 4.69922 4.72765 4.77046 4.81294 4.85661 4.91142 5.00075 5.06252 5.10100 5.25458 5.45327 5.71598 5.77950 6.17120 6.19975 6.30833 6.69633 6.85474 7.04241 7.05015 7.74757 7.97169 9.17481 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019971 B = 0.002501 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.725999 B =11193.312168 C =11573.239383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.067 4.067 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.299 1.299 6 H -0.237 1.237 7 C -0.242 4.242 8 H 0.048 0.952 9 N -0.747 5.747 10 C 0.131 3.869 11 C 0.139 3.861 12 O -0.556 6.556 13 C -0.113 4.113 14 C 0.125 3.875 15 N -0.604 5.604 16 C 0.496 3.504 17 O -0.580 6.580 18 C 0.090 3.910 19 N -0.588 5.588 20 C 0.074 3.926 21 C 0.041 3.959 22 O -0.387 6.387 23 C 0.058 3.942 24 C 0.480 3.520 25 O -0.586 6.586 26 C 0.114 3.886 27 C -0.160 4.160 28 H 0.259 0.741 29 H 0.368 0.632 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.382 0.618 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.155 0.845 39 H 0.125 0.875 40 H 0.063 0.937 41 H 0.142 0.858 42 H 0.086 0.914 43 H 0.119 0.881 44 H 0.129 0.871 45 H 0.110 0.890 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.304 1.914 8.659 33.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.226 1.226 6 H -0.161 1.161 7 C -0.372 4.372 8 H 0.066 0.934 9 N -0.394 5.394 10 C 0.004 3.996 11 C 0.098 3.902 12 O -0.363 6.363 13 C -0.152 4.152 14 C 0.003 3.997 15 N -0.337 5.337 16 C 0.284 3.716 17 O -0.460 6.460 18 C -0.036 4.036 19 N -0.320 5.320 20 C -0.048 4.048 21 C -0.035 4.035 22 O -0.305 6.305 23 C -0.021 4.021 24 C 0.270 3.730 25 O -0.466 6.466 26 C -0.008 4.008 27 C -0.198 4.198 28 H 0.067 0.933 29 H 0.203 0.797 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.231 0.769 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.130 0.870 38 H 0.172 0.828 39 H 0.143 0.857 40 H 0.082 0.918 41 H 0.160 0.840 42 H 0.104 0.896 43 H 0.136 0.864 44 H 0.146 0.854 45 H 0.128 0.872 46 H 0.113 0.887 47 H 0.102 0.898 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 32.379 0.459 8.579 33.499 hybrid contribution -1.479 1.105 -0.175 1.854 sum 30.901 1.564 8.403 32.061 Atomic orbital electron populations 1.69914 1.07548 1.26949 1.59156 1.25664 0.96234 1.01872 1.02029 0.85340 0.79046 0.78495 0.78453 1.19872 1.22591 1.16090 1.18948 0.82682 0.93362 1.42249 0.93437 1.42456 1.02347 1.03535 1.91084 1.21413 0.91462 0.88224 0.98475 1.21189 0.91377 0.92296 0.85387 1.86427 1.70424 1.35671 1.43781 1.21804 0.94807 0.95134 1.03455 1.21397 0.94227 0.94722 0.89396 1.48218 1.35546 1.22212 1.27771 1.21652 0.79244 0.87295 0.83425 1.90671 1.53283 1.26956 1.75057 1.21622 0.93802 0.96852 0.91358 1.47272 1.08086 1.47631 1.28963 1.22520 0.78632 1.04011 0.99635 1.23301 1.01058 0.83978 0.95155 1.88194 1.32570 1.31976 1.77744 1.22812 0.80053 1.04226 0.95015 1.21704 0.91044 0.78139 0.82143 1.90745 1.21658 1.61037 1.73197 1.21810 0.89618 0.84721 1.04627 1.22463 0.97222 1.01865 0.98281 0.93254 0.79691 0.95709 0.95654 0.76859 0.89421 0.90906 0.89864 0.90529 0.86976 0.82804 0.85714 0.91842 0.84030 0.89619 0.86366 0.85358 0.87162 0.88660 0.89765 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.65 13.97 21.65 0.30 -62.34 16 2 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 3 Si 0.96 42.23 27.74 68.60 1.90 44.14 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.24 -8.68 6.52 99.48 0.65 -8.03 16 7 C -0.24 -13.57 10.47 84.03 0.88 -12.69 16 8 H 0.05 3.01 8.06 -2.91 -0.02 2.98 16 9 N -0.75 -32.62 4.87 -343.47 -1.67 -34.29 16 10 C 0.13 4.89 5.40 86.38 0.47 5.35 16 11 C 0.14 3.86 0.71 -10.77 -0.01 3.86 16 12 O -0.56 -14.85 11.71 -148.98 -1.74 -16.60 16 13 C -0.11 -2.94 5.11 30.67 0.16 -2.78 16 14 C 0.13 3.03 6.20 86.36 0.54 3.57 16 15 N -0.60 -13.39 2.98 -819.73 -2.44 -15.83 16 16 C 0.50 12.11 7.76 87.66 0.68 12.79 16 17 O -0.58 -19.06 15.84 -3.06 -0.05 -19.11 16 18 C 0.09 1.49 4.12 85.63 0.35 1.85 16 19 N -0.59 -10.27 2.32 -828.98 -1.92 -12.20 16 20 C 0.07 0.70 6.68 86.46 0.58 1.28 16 21 C 0.04 0.27 6.89 71.99 0.50 0.77 16 22 O -0.39 -5.61 10.86 -148.98 -1.62 -7.23 16 23 C 0.06 0.88 6.98 71.12 0.50 1.37 16 24 C 0.48 10.74 7.58 87.69 0.66 11.40 16 25 O -0.59 -18.35 16.39 -3.03 -0.05 -18.40 16 26 C 0.11 1.99 6.08 86.22 0.52 2.52 16 27 C -0.16 -3.86 4.91 30.53 0.15 -3.71 16 28 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.37 14.30 3.44 -92.71 -0.32 13.98 16 30 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.38 9.38 7.85 -74.06 -0.58 8.80 16 33 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.08 1.92 7.81 -2.39 -0.02 1.90 16 36 H 0.08 2.06 7.01 -2.39 -0.02 2.05 16 37 H 0.11 2.06 6.83 -2.39 -0.02 2.04 16 38 H 0.15 1.08 7.74 -2.39 -0.02 1.06 16 39 H 0.12 0.25 7.99 -2.38 -0.02 0.23 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.14 0.21 8.14 -2.39 -0.02 0.20 16 42 H 0.09 0.24 8.10 -2.39 -0.02 0.22 16 43 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.11 1.29 5.94 -2.38 -0.01 1.28 16 46 H 0.10 1.42 7.81 -2.39 -0.02 1.40 16 47 H 0.08 2.10 6.82 -2.39 -0.02 2.08 16 48 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -85.79 378.76 -0.82 -86.61 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.04 Total: 33.04 kcal Atomic # 6 Polarization: 15.77 SS G_CDS: 6.44 Total: 22.21 kcal Atomic # 7 Polarization: -118.93 SS G_CDS: -5.74 Total: -124.66 kcal Atomic # 8 Polarization: -57.87 SS G_CDS: -3.46 Total: -61.33 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.90 Total: 44.14 kcal Total: -85.79 -0.82 -86.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717319642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.946 kcal (2) G-P(sol) polarization free energy of solvation -85.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds