Wall clock time and date at job start Sat Apr 11 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.86752 * 2 1 4 4 O 1.43744 * 109.87990 * 121.16218 * 2 1 3 5 5 C 1.44373 * 106.97521 * 145.93887 * 4 2 1 6 6 C 1.54995 * 103.49011 * 319.94064 * 5 4 2 7 7 C 1.54092 * 109.87665 * 238.99469 * 2 1 3 8 8 H 1.09005 * 110.48996 * 119.73514 * 7 2 1 9 9 C 1.50698 * 110.49362 * 357.22000 * 7 2 1 10 10 O 1.21283 * 120.00264 * 273.59166 * 9 7 2 11 11 N 1.34777 * 120.00433 * 93.57953 * 9 7 2 12 12 C 1.46497 * 120.00410 * 180.02562 * 11 9 7 13 13 C 1.53006 * 109.47205 * 180.02562 * 12 11 9 14 14 O 1.42901 * 112.93506 * 309.66731 * 13 12 11 15 15 C 1.53932 * 113.73483 * 81.23061 * 13 12 11 16 16 N 1.48301 * 86.06174 * 138.13090 * 15 13 12 17 17 C 1.46897 * 111.00812 * 222.41944 * 16 15 13 18 18 C 1.50697 * 109.47376 * 269.35286 * 17 16 15 19 19 O 1.21297 * 119.99798 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99981 * 179.97438 * 18 17 16 21 21 C 1.37094 * 119.99581 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00448 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99828 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00109 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 120.00235 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.46718 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46975 * 119.99784 * 25 23 21 28 28 H 1.48497 * 109.46919 * 239.99842 * 25 23 21 29 29 C 1.47961 * 90.75477 * 335.31266 * 16 15 13 30 30 H 1.09001 * 109.47018 * 183.06721 * 1 2 3 31 31 H 1.09002 * 109.46871 * 303.06100 * 1 2 3 32 32 H 1.08997 * 109.47306 * 63.06236 * 1 2 3 33 33 H 1.09005 * 110.61764 * 78.43861 * 5 4 2 34 34 H 1.08998 * 110.62004 * 201.28264 * 5 4 2 35 35 H 1.09008 * 110.90577 * 278.82542 * 6 5 4 36 36 H 1.08996 * 110.91234 * 155.22655 * 6 5 4 37 37 H 0.97007 * 119.99425 * 0.02562 * 11 9 7 38 38 H 1.08997 * 109.47124 * 60.00605 * 12 11 9 39 39 H 1.08994 * 109.47166 * 299.99961 * 12 11 9 40 40 H 0.96698 * 114.00096 * 50.33166 * 14 13 12 41 41 H 1.08997 * 113.75958 * 252.50557 * 15 13 12 42 42 H 1.09006 * 113.75906 * 23.86933 * 15 13 12 43 43 H 1.09004 * 109.46983 * 29.35731 * 17 16 15 44 44 H 1.09001 * 109.47142 * 149.35218 * 17 16 15 45 45 H 0.96992 * 119.99988 * 359.97438 * 20 18 17 46 46 H 0.97001 * 120.00272 * 179.97438 * 24 23 21 47 47 H 1.09001 * 113.75814 * 270.36919 * 29 16 15 48 48 H 1.08999 * 113.76114 * 139.00709 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 8 2.0189 -0.6995 1.1567 5 6 3.2380 -1.3651 0.7629 6 6 2.9196 -1.8904 -0.6602 7 6 2.0540 -0.7465 -1.2421 8 1 2.6600 -0.0827 -1.8588 9 6 0.9074 -1.3077 -2.0430 10 8 0.4512 -2.3972 -1.7676 11 7 0.3887 -0.5988 -3.0652 12 6 -0.7263 -1.1441 -3.8434 13 6 -1.1212 -0.1481 -4.9356 14 8 -1.3206 1.1759 -4.4363 15 6 -0.2240 -0.2106 -6.1849 16 7 -1.4775 -0.0781 -6.9663 17 6 -1.4771 -0.9868 -8.1205 18 6 -0.8887 -0.2813 -9.3151 19 8 -0.5076 0.8659 -9.2149 20 7 -0.7859 -0.9251 -10.4947 21 6 -0.2502 -0.2834 -11.5813 22 1 0.0892 0.7381 -11.4922 23 6 -0.1447 -0.9468 -12.7976 24 7 -0.5580 -2.1894 -12.9063 25 14 0.5847 -0.0723 -14.2784 26 1 0.9703 1.3100 -13.8966 27 1 1.7853 -0.8100 -14.7472 28 1 -0.4221 -0.0215 -15.3688 29 6 -2.2593 -0.6451 -5.8453 30 1 -0.3633 -1.0262 0.0550 31 1 -0.3633 0.5606 0.8613 32 1 -0.3634 0.4655 -0.9161 33 1 4.0685 -0.6597 0.7347 34 1 3.4600 -2.1909 1.4387 35 1 2.3540 -2.8211 -0.6137 36 1 3.8331 -2.0207 -1.2402 37 1 0.7537 0.2725 -3.2856 38 1 -1.5776 -1.3187 -3.1854 39 1 -0.4231 -2.0850 -4.3026 40 1 -0.5944 1.5029 -3.8879 41 1 0.4497 0.6404 -6.2847 42 1 0.2772 -1.1693 -6.3181 43 1 -0.8797 -1.8685 -7.8885 44 1 -2.4999 -1.2897 -8.3448 45 1 -1.0903 -1.8425 -10.5747 46 1 -0.4847 -2.6525 -13.7554 47 1 -2.3520 -1.7306 -5.8793 48 1 -3.2104 -0.1410 -5.6739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271373792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:41 Heat of formation + Delta-G solvation = -119.339432 kcal Electronic energy + Delta-G solvation = -30007.874904 eV Core-core repulsion = 25678.478694 eV Total energy + Delta-G solvation = -4329.396210 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.22508 -40.45010 -38.76963 -37.91569 -35.96318 -34.61099 -33.87986 -33.01055 -31.92902 -31.28352 -30.33781 -27.90277 -26.54114 -26.28654 -24.92034 -23.14667 -22.64354 -22.13101 -20.49860 -20.06095 -19.20019 -17.99711 -17.80788 -17.43491 -16.61215 -16.50121 -16.16008 -15.93155 -15.71988 -15.53084 -15.39479 -14.95146 -14.61474 -14.27374 -14.08591 -13.71983 -13.69381 -13.32483 -13.14517 -13.05011 -12.78406 -12.71021 -12.55559 -12.37496 -12.14901 -11.99824 -11.67707 -11.51389 -11.46627 -11.38472 -11.25064 -11.02700 -10.84980 -10.40265 -10.35022 -10.23545 -10.06209 -9.99887 -9.53428 -9.51466 -8.76453 -8.19541 -7.96373 -6.42026 -3.82737 2.16642 2.60552 3.15628 3.26046 3.33313 3.35549 3.57679 3.85822 3.90358 3.91248 4.05510 4.18094 4.20203 4.32147 4.43481 4.55737 4.67421 4.75081 4.82757 4.87136 5.01831 5.06132 5.12141 5.18570 5.22356 5.27480 5.31162 5.36129 5.41675 5.50784 5.52233 5.60367 5.65222 5.67410 5.74347 5.79358 5.90236 5.97140 6.24584 6.41082 6.50219 6.94791 7.07030 7.32729 7.55009 7.76603 8.05983 8.61972 9.18383 9.54466 10.06876 10.75926 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021317 B = 0.001913 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.193565 B =14631.400267 C =15142.251509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.091 3.909 3 H 0.080 0.920 4 O -0.369 6.369 5 C 0.048 3.952 6 C -0.143 4.143 7 C -0.146 4.146 8 H 0.105 0.895 9 C 0.532 3.468 10 O -0.530 6.530 11 N -0.729 5.729 12 C 0.100 3.900 13 C 0.092 3.908 14 O -0.519 6.519 15 C -0.012 4.012 16 N -0.435 5.435 17 C 0.007 3.993 18 C 0.446 3.554 19 O -0.574 6.574 20 N -0.567 5.567 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.018 3.982 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.398 0.602 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.369 0.631 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.090 0.910 45 H 0.391 0.609 46 H 0.271 0.729 47 H 0.083 0.917 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.695 -0.029 25.845 26.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.033 3.967 3 H 0.097 0.903 4 O -0.288 6.288 5 C -0.028 4.028 6 C -0.181 4.181 7 C -0.168 4.168 8 H 0.123 0.877 9 C 0.318 3.682 10 O -0.405 6.405 11 N -0.383 5.383 12 C -0.024 4.024 13 C 0.049 3.951 14 O -0.323 6.323 15 C -0.141 4.141 16 N -0.158 5.158 17 C -0.125 4.125 18 C 0.231 3.769 19 O -0.457 6.457 20 N -0.205 5.205 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.181 4.181 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.112 4.112 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.233 0.767 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.217 0.783 41 H 0.115 0.885 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.108 0.892 45 H 0.224 0.776 46 H 0.080 0.920 47 H 0.101 0.899 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.754 0.406 25.487 25.765 hybrid contribution 1.213 -0.634 -0.870 1.622 sum 4.967 -0.228 24.617 25.114 Atomic orbital electron populations 1.22146 0.93329 1.04042 1.02873 1.22585 0.95616 0.95202 0.83282 0.90269 1.88924 1.39787 1.67582 1.32488 1.23564 0.87551 0.96569 0.95163 1.23178 0.99894 0.98942 0.96114 1.22848 0.96387 0.99602 0.97945 0.87720 1.20116 0.83594 0.84914 0.79545 1.90723 1.61276 1.20738 1.67808 1.45983 1.36387 1.22445 1.33493 1.22064 0.89594 0.97285 0.93451 1.22987 0.97867 0.83357 0.90885 1.86678 1.46582 1.28610 1.70434 1.24770 0.94838 1.02603 0.91916 1.68537 1.04911 1.41330 1.00972 1.22530 1.02091 0.94524 0.93400 1.19652 0.85254 0.87916 0.84035 1.90529 1.53066 1.17881 1.84270 1.41881 1.55264 1.14982 1.08347 1.19741 1.36508 0.99112 0.87311 0.87917 1.25259 0.97833 0.95818 0.99153 1.69617 1.47513 1.10522 1.26794 0.85804 0.78431 0.79464 0.80672 1.19233 1.20790 1.20745 1.24116 0.98428 0.99107 0.89521 0.90851 0.91290 0.90924 0.91882 0.88506 0.88392 0.89594 0.76669 0.90129 0.90011 0.78315 0.88521 0.90632 0.92382 0.89179 0.77564 0.91956 0.89851 0.88025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 8.41 37.16 0.31 -0.96 16 2 C 0.09 0.64 4.05 -26.16 -0.11 0.54 16 3 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 4 O -0.37 -3.35 11.19 -35.23 -0.39 -3.74 16 5 C 0.05 0.30 7.72 38.21 0.29 0.60 16 6 C -0.14 -0.97 6.65 -24.72 -0.16 -1.13 16 7 C -0.15 -0.95 3.43 -90.25 -0.31 -1.26 16 8 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 9 C 0.53 4.72 4.78 -10.99 -0.05 4.67 16 10 O -0.53 -6.79 15.02 5.56 0.08 -6.70 16 11 N -0.73 -5.16 4.82 -60.30 -0.29 -5.45 16 12 C 0.10 0.87 5.32 -4.04 -0.02 0.85 16 13 C 0.09 0.95 1.56 -89.69 -0.14 0.81 16 14 O -0.52 -5.54 13.50 -35.23 -0.48 -6.02 16 15 C -0.01 -0.16 7.37 -2.57 -0.02 -0.18 16 16 N -0.44 -7.09 5.66 -239.34 -1.35 -8.44 16 17 C 0.01 0.11 5.28 -4.98 -0.03 0.09 16 18 C 0.45 10.64 7.83 -10.98 -0.09 10.56 16 19 O -0.57 -15.92 16.01 5.54 0.09 -15.83 16 20 N -0.57 -14.44 5.29 -10.96 -0.06 -14.50 16 21 C -0.30 -8.33 9.68 -14.94 -0.14 -8.47 16 22 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 24 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 25 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 C 0.02 0.21 7.35 -2.76 -0.02 0.19 16 30 H 0.07 0.74 7.05 -51.93 -0.37 0.38 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.47 7.10 -51.93 -0.37 0.10 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.88 6.90 -51.92 -0.36 0.53 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.40 1.82 7.13 -40.82 -0.29 1.53 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.77 7.98 -51.93 -0.41 0.35 16 40 H 0.37 2.35 7.42 45.56 0.34 2.69 16 41 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.08 0.93 7.33 -51.93 -0.38 0.55 16 43 H 0.06 0.89 7.38 -51.93 -0.38 0.50 16 44 H 0.09 1.42 8.08 -51.93 -0.42 1.01 16 45 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 46 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 47 H 0.08 0.81 7.88 -51.93 -0.41 0.40 16 48 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 391.22 15.07 5.90 5.90 Total: -1.00 -36.69 391.22 -8.07 -44.76 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -6.69 Total: 11.09 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -0.58 Total: 6.74 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.98 Total: -52.28 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.70 Total: -32.29 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.69 -8.07 -44.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271373792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.580 kcal (2) G-P(sol) polarization free energy of solvation -36.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds