Wall clock time and date at job start Sat Apr 11 2020 06:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.86752 * 2 1 4 4 O 1.43744 * 109.87990 * 121.16218 * 2 1 3 5 5 C 1.44373 * 106.97521 * 145.93887 * 4 2 1 6 6 C 1.54995 * 103.49011 * 319.94064 * 5 4 2 7 7 C 1.54092 * 109.87665 * 238.99469 * 2 1 3 8 8 H 1.09005 * 110.48996 * 119.73514 * 7 2 1 9 9 C 1.50698 * 110.49362 * 357.22000 * 7 2 1 10 10 O 1.21283 * 120.00264 * 273.59166 * 9 7 2 11 11 N 1.34777 * 120.00433 * 93.57953 * 9 7 2 12 12 C 1.46497 * 120.00410 * 180.02562 * 11 9 7 13 13 C 1.53006 * 109.47205 * 180.02562 * 12 11 9 14 14 O 1.42901 * 112.93506 * 309.66731 * 13 12 11 15 15 C 1.53932 * 113.73483 * 81.23061 * 13 12 11 16 16 N 1.48301 * 86.06174 * 138.13090 * 15 13 12 17 17 C 1.46897 * 111.00812 * 222.41944 * 16 15 13 18 18 C 1.50697 * 109.47376 * 269.35286 * 17 16 15 19 19 O 1.21297 * 119.99798 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99981 * 179.97438 * 18 17 16 21 21 C 1.37094 * 119.99581 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00448 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99828 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00109 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 120.00235 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.46718 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46975 * 119.99784 * 25 23 21 28 28 H 1.48497 * 109.46919 * 239.99842 * 25 23 21 29 29 C 1.47961 * 90.75477 * 335.31266 * 16 15 13 30 30 H 1.09001 * 109.47018 * 183.06721 * 1 2 3 31 31 H 1.09002 * 109.46871 * 303.06100 * 1 2 3 32 32 H 1.08997 * 109.47306 * 63.06236 * 1 2 3 33 33 H 1.09005 * 110.61764 * 78.43861 * 5 4 2 34 34 H 1.08998 * 110.62004 * 201.28264 * 5 4 2 35 35 H 1.09008 * 110.90577 * 278.82542 * 6 5 4 36 36 H 1.08996 * 110.91234 * 155.22655 * 6 5 4 37 37 H 0.97007 * 119.99425 * 0.02562 * 11 9 7 38 38 H 1.08997 * 109.47124 * 60.00605 * 12 11 9 39 39 H 1.08994 * 109.47166 * 299.99961 * 12 11 9 40 40 H 0.96698 * 114.00096 * 50.33166 * 14 13 12 41 41 H 1.08997 * 113.75958 * 252.50557 * 15 13 12 42 42 H 1.09006 * 113.75906 * 23.86933 * 15 13 12 43 43 H 1.09004 * 109.46983 * 29.35731 * 17 16 15 44 44 H 1.09001 * 109.47142 * 149.35218 * 17 16 15 45 45 H 0.96992 * 119.99988 * 359.97438 * 20 18 17 46 46 H 0.97001 * 120.00272 * 179.97438 * 24 23 21 47 47 H 1.09001 * 113.75814 * 270.36919 * 29 16 15 48 48 H 1.08999 * 113.76114 * 139.00709 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 8 2.0189 -0.6995 1.1567 5 6 3.2380 -1.3651 0.7629 6 6 2.9196 -1.8904 -0.6602 7 6 2.0540 -0.7465 -1.2421 8 1 2.6600 -0.0827 -1.8588 9 6 0.9074 -1.3077 -2.0430 10 8 0.4512 -2.3972 -1.7676 11 7 0.3887 -0.5988 -3.0652 12 6 -0.7263 -1.1441 -3.8434 13 6 -1.1212 -0.1481 -4.9356 14 8 -1.3206 1.1759 -4.4363 15 6 -0.2240 -0.2106 -6.1849 16 7 -1.4775 -0.0781 -6.9663 17 6 -1.4771 -0.9868 -8.1205 18 6 -0.8887 -0.2813 -9.3151 19 8 -0.5076 0.8659 -9.2149 20 7 -0.7859 -0.9251 -10.4947 21 6 -0.2502 -0.2834 -11.5813 22 1 0.0892 0.7381 -11.4922 23 6 -0.1447 -0.9468 -12.7976 24 7 -0.5580 -2.1894 -12.9063 25 14 0.5847 -0.0723 -14.2784 26 1 0.9703 1.3100 -13.8966 27 1 1.7853 -0.8100 -14.7472 28 1 -0.4221 -0.0215 -15.3688 29 6 -2.2593 -0.6451 -5.8453 30 1 -0.3633 -1.0262 0.0550 31 1 -0.3633 0.5606 0.8613 32 1 -0.3634 0.4655 -0.9161 33 1 4.0685 -0.6597 0.7347 34 1 3.4600 -2.1909 1.4387 35 1 2.3540 -2.8211 -0.6137 36 1 3.8331 -2.0207 -1.2402 37 1 0.7537 0.2725 -3.2856 38 1 -1.5776 -1.3187 -3.1854 39 1 -0.4231 -2.0850 -4.3026 40 1 -0.5944 1.5029 -3.8879 41 1 0.4497 0.6404 -6.2847 42 1 0.2772 -1.1693 -6.3181 43 1 -0.8797 -1.8685 -7.8885 44 1 -2.4999 -1.2897 -8.3448 45 1 -1.0903 -1.8425 -10.5747 46 1 -0.4847 -2.6525 -13.7554 47 1 -2.3520 -1.7306 -5.8793 48 1 -3.2104 -0.1410 -5.6739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271373792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:40 Heat of formation + Delta-G solvation = -152.867526 kcal Electronic energy + Delta-G solvation = -30009.328792 eV Core-core repulsion = 25678.478694 eV Total energy + Delta-G solvation = -4330.850098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.96981 -41.35216 -39.84759 -39.31850 -36.97187 -35.90314 -35.36510 -33.60974 -33.29354 -32.45248 -31.51612 -28.92744 -27.32871 -27.27865 -26.57536 -24.20952 -23.16263 -22.95885 -21.21932 -21.07310 -20.80660 -19.89053 -18.59946 -18.05030 -17.83000 -17.32721 -17.20319 -16.77458 -16.66886 -16.56044 -16.43729 -16.20489 -15.79040 -15.59847 -15.31583 -14.99431 -14.67777 -14.47009 -14.14009 -13.86757 -13.64474 -13.56724 -13.44487 -13.34855 -13.28539 -13.09305 -12.97893 -12.93755 -12.41720 -12.33411 -12.22732 -12.12923 -11.98946 -11.89977 -11.78981 -11.51453 -11.08056 -10.96209 -10.58803 -10.39670 -10.22559 -10.01671 -9.64255 -8.47527 -5.96206 1.35625 1.40697 1.49847 1.54955 1.96538 2.05157 2.27601 2.64796 2.86309 2.92430 3.18483 3.22309 3.36484 3.39437 3.55072 3.64016 3.83165 4.02224 4.07994 4.18903 4.21314 4.23921 4.28434 4.34466 4.38235 4.46704 4.53706 4.55201 4.60123 4.62012 4.66696 4.77279 4.83393 4.91598 4.94426 4.96839 5.10766 5.17703 5.27172 5.38034 5.40693 5.84787 5.91756 6.05583 6.37704 6.60186 6.69619 7.12675 7.13614 7.56137 8.12725 8.70107 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021317 B = 0.001913 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.193565 B =14631.400267 C =15142.251509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.088 3.912 3 H 0.106 0.894 4 O -0.398 6.398 5 C 0.046 3.954 6 C -0.145 4.145 7 C -0.142 4.142 8 H 0.139 0.861 9 C 0.531 3.469 10 O -0.574 6.574 11 N -0.718 5.718 12 C 0.111 3.889 13 C 0.117 3.883 14 O -0.535 6.535 15 C -0.016 4.016 16 N -0.477 5.477 17 C 0.020 3.980 18 C 0.442 3.558 19 O -0.619 6.619 20 N -0.576 5.576 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.274 1.274 27 H -0.270 1.270 28 H -0.271 1.271 29 C 0.018 3.982 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.413 0.587 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.388 0.612 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.110 0.890 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.494 0.163 26.289 26.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 H 0.124 0.876 4 O -0.318 6.318 5 C -0.030 4.030 6 C -0.183 4.183 7 C -0.164 4.164 8 H 0.157 0.843 9 C 0.319 3.681 10 O -0.453 6.453 11 N -0.372 5.372 12 C -0.013 4.013 13 C 0.075 3.925 14 O -0.342 6.342 15 C -0.145 4.145 16 N -0.200 5.200 17 C -0.112 4.112 18 C 0.229 3.771 19 O -0.505 6.505 20 N -0.214 5.214 21 C -0.461 4.461 22 H 0.095 0.905 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.816 3.184 26 H -0.199 1.199 27 H -0.195 1.195 28 H -0.196 1.196 29 C -0.110 4.110 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.250 0.750 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.238 0.762 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.126 0.874 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.128 0.872 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.558 0.603 25.944 26.348 hybrid contribution 0.943 -0.663 -0.957 1.498 sum 5.501 -0.060 24.987 25.586 Atomic orbital electron populations 1.22126 0.94280 1.02178 1.03583 1.22756 0.94963 0.96322 0.82897 0.87646 1.88892 1.41041 1.68155 1.33707 1.23725 0.87322 0.97143 0.94799 1.23165 1.00333 0.97797 0.96969 1.22933 0.95673 0.99909 0.97864 0.84327 1.20543 0.83750 0.84316 0.79488 1.90710 1.62704 1.22811 1.69043 1.45864 1.35702 1.22853 1.32734 1.21855 0.90051 0.96566 0.92869 1.22623 0.95980 0.83633 0.90302 1.86643 1.47884 1.28816 1.70892 1.24827 0.94182 1.02430 0.93083 1.68469 1.07263 1.42308 1.01921 1.22402 1.02841 0.94647 0.91261 1.20808 0.83682 0.87541 0.85047 1.90490 1.54686 1.20085 1.85203 1.41960 1.55648 1.15185 1.08624 1.19672 1.38645 0.98687 0.89135 0.90519 1.26040 0.97640 0.96512 1.01204 1.69673 1.47481 1.11247 1.27787 0.84874 0.78153 0.78046 0.77282 1.19866 1.19466 1.19646 1.24237 0.98323 1.00685 0.87794 0.93859 0.91103 0.89744 0.89590 0.88223 0.91303 0.87638 0.74965 0.90215 0.90222 0.76159 0.90240 0.89567 0.89769 0.87371 0.77024 0.91316 0.87186 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 8.41 71.98 0.61 -1.76 16 2 C 0.09 1.08 4.05 30.97 0.13 1.20 16 3 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 4 O -0.40 -6.81 11.19 -148.98 -1.67 -8.47 16 5 C 0.05 0.51 7.72 72.66 0.56 1.07 16 6 C -0.14 -1.77 6.65 31.89 0.21 -1.55 16 7 C -0.14 -1.55 3.43 -10.55 -0.04 -1.59 16 8 H 0.14 0.56 8.14 -2.38 -0.02 0.54 16 9 C 0.53 8.72 4.78 87.66 0.42 9.13 16 10 O -0.57 -14.67 15.02 -3.04 -0.05 -14.72 16 11 N -0.72 -8.66 4.82 -463.07 -2.23 -10.90 16 12 C 0.11 1.72 5.32 86.38 0.46 2.18 16 13 C 0.12 2.21 1.56 -10.15 -0.02 2.19 16 14 O -0.54 -10.41 13.50 -148.98 -2.01 -12.42 16 15 C -0.02 -0.41 7.37 86.34 0.64 0.23 16 16 N -0.48 -15.00 5.66 -914.35 -5.17 -20.17 16 17 C 0.02 0.68 5.28 85.56 0.45 1.13 16 18 C 0.44 21.29 7.83 87.66 0.69 21.98 16 19 O -0.62 -35.20 16.01 -3.08 -0.05 -35.25 16 20 N -0.58 -29.77 5.29 -306.98 -1.62 -31.40 16 21 C -0.33 -19.01 9.68 84.04 0.81 -18.19 16 22 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 24 N -0.92 -49.74 13.05 21.66 0.28 -49.46 16 25 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 28 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 29 C 0.02 0.39 7.35 86.41 0.64 1.03 16 30 H 0.04 0.89 7.05 -2.39 -0.02 0.87 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 0.95 7.10 -2.39 -0.02 0.93 16 33 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 35 H 0.07 1.27 6.90 -2.38 -0.02 1.25 16 36 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.41 2.63 7.13 -92.70 -0.66 1.97 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.33 7.98 -2.39 -0.02 1.31 16 40 H 0.39 4.00 7.42 -74.06 -0.55 3.45 16 41 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.09 1.97 7.33 -2.38 -0.02 1.95 16 43 H 0.08 2.39 7.38 -2.39 -0.02 2.37 16 44 H 0.11 3.23 8.08 -2.39 -0.02 3.21 16 45 H 0.40 19.30 7.90 -92.71 -0.73 18.57 16 46 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 47 H 0.11 1.80 7.88 -2.39 -0.02 1.78 16 48 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -82.02 391.22 -5.40 -87.42 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: -0.93 Total: 33.51 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 6.02 Total: 16.74 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -8.74 Total: -111.92 kcal Atomic # 8 Polarization: -67.09 SS G_CDS: -3.77 Total: -70.86 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -82.02 -5.40 -87.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271373792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.445 kcal (2) G-P(sol) polarization free energy of solvation -82.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds