Wall clock time and date at job start Sat Apr 11 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47110 * 2 1 4 4 C 1.52998 * 109.47264 * 239.99758 * 2 1 3 5 5 C 1.52998 * 109.47260 * 175.00203 * 4 2 1 6 6 N 1.46901 * 109.47178 * 179.97438 * 5 4 2 7 7 C 1.46902 * 111.00248 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.46723 * 324.99913 * 7 6 5 9 9 C 1.52998 * 109.47225 * 84.99616 * 7 6 5 10 10 C 1.50697 * 109.47211 * 205.00168 * 7 6 5 11 11 N 1.30519 * 126.34476 * 314.99576 * 10 7 6 12 12 N 1.28600 * 109.66808 * 179.73098 * 11 10 7 13 13 C 1.30516 * 109.67696 * 0.44987 * 12 11 10 14 14 N 1.35495 * 107.30468 * 359.55808 * 13 12 11 15 15 C 1.46499 * 126.97946 * 180.26092 * 14 13 12 16 16 N 1.46510 * 109.46952 * 119.99849 * 2 1 3 17 17 C 1.34771 * 119.99779 * 274.99734 * 16 2 1 18 18 O 1.21286 * 120.00296 * 0.02562 * 17 16 2 19 19 C 1.50699 * 120.00017 * 179.97438 * 17 16 2 20 20 S 1.81001 * 109.47433 * 180.02562 * 19 17 16 21 21 C 1.76197 * 100.00192 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99951 * 359.97438 * 21 20 19 23 23 C 1.38799 * 119.99978 * 180.02562 * 21 20 19 24 24 N 1.31635 * 119.99914 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00056 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47148 * 59.99254 * 25 23 21 27 27 H 1.48497 * 109.47316 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46869 * 299.99606 * 25 23 21 29 29 H 1.08999 * 109.47110 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.46874 * 300.00172 * 1 2 3 31 31 H 1.08997 * 109.46688 * 60.00103 * 1 2 3 32 32 H 1.08999 * 109.47156 * 55.00177 * 4 2 1 33 33 H 1.09004 * 109.47094 * 294.99739 * 4 2 1 34 34 H 1.09006 * 109.47279 * 60.00174 * 5 4 2 35 35 H 1.09000 * 109.47137 * 299.99939 * 5 4 2 36 36 H 1.00904 * 110.99878 * 303.95099 * 6 5 4 37 37 H 1.09007 * 109.47028 * 60.00483 * 9 7 6 38 38 H 1.09003 * 109.46994 * 180.02562 * 9 7 6 39 39 H 1.08997 * 109.47278 * 300.00669 * 9 7 6 40 40 H 1.08002 * 126.35125 * 179.82818 * 13 12 11 41 41 H 1.09004 * 109.47293 * 90.03308 * 15 14 13 42 42 H 1.09007 * 109.47309 * 210.02845 * 15 14 13 43 43 H 1.09000 * 109.47123 * 330.02746 * 15 14 13 44 44 H 0.97000 * 119.99773 * 94.99949 * 16 2 1 45 45 H 1.08997 * 109.47124 * 300.00792 * 19 17 16 46 46 H 1.08998 * 109.46854 * 60.00096 * 19 17 16 47 47 H 0.96999 * 119.99544 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 7 4.0546 -1.3064 -2.5127 7 6 5.5182 -1.2240 -2.6076 8 1 5.8534 -0.2601 -2.2245 9 6 6.1470 -2.3477 -1.7813 10 6 5.9370 -1.3650 -4.0483 11 7 5.4865 -2.2432 -4.9024 12 7 6.0582 -2.0721 -6.0415 13 6 6.9064 -1.0831 -5.9633 14 7 6.8509 -0.6037 -4.6972 15 6 7.6224 0.5113 -4.1425 16 7 2.0184 -0.6906 1.1963 17 6 2.1471 -0.0182 2.3571 18 8 1.8582 1.1585 2.4117 19 6 2.6488 -0.7287 3.5878 20 16 2.7092 0.4342 4.9735 21 6 3.3124 -0.6309 6.2408 22 1 3.5217 -1.6674 6.0209 23 6 3.5177 -0.1381 7.5221 24 7 3.2621 1.1250 7.7902 25 14 4.1565 -1.2675 8.8659 26 1 5.4834 -1.8051 8.4713 27 1 4.2890 -0.5040 10.1327 28 1 3.2055 -2.3911 9.0617 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.6055 -0.2618 -2.1369 33 1 1.7517 -1.7716 -1.2055 34 1 3.9995 -1.0729 -0.4258 35 1 3.8533 0.4369 -1.3573 36 1 3.7452 -2.2668 -2.5270 37 1 5.8118 -3.3116 -2.1644 38 1 7.2330 -2.2862 -1.8514 39 1 5.8441 -2.2457 -0.7393 40 1 7.5328 -0.7124 -6.7611 41 1 7.0710 1.4408 -4.2842 42 1 7.7869 0.3452 -3.0778 43 1 8.5834 0.5775 -4.6526 44 1 2.2490 -1.6318 1.1527 45 1 1.9759 -1.5505 3.8326 46 1 3.6479 -1.1213 3.3987 47 1 3.4059 1.4694 8.6856 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272658581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:51 Heat of formation + Delta-G solvation = 34.548459 kcal Electronic energy + Delta-G solvation = -26578.004296 eV Core-core repulsion = 22730.326787 eV Total energy + Delta-G solvation = -3847.677508 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.41467 -39.50430 -37.85518 -35.92579 -35.34831 -32.65958 -32.45109 -31.27278 -29.77535 -28.57057 -28.08473 -27.81154 -25.50756 -24.39527 -23.08647 -22.38106 -21.41217 -20.60997 -20.29772 -17.87816 -17.63412 -16.76016 -16.54120 -16.20550 -16.10906 -15.56092 -15.28176 -14.89513 -14.82598 -14.71751 -14.22130 -13.97768 -13.83810 -13.53139 -13.40145 -13.28816 -13.16816 -12.81688 -12.67054 -12.48230 -12.09447 -11.97251 -11.91988 -11.73212 -11.55723 -11.24311 -11.07151 -11.06358 -10.93969 -10.78543 -10.61946 -10.55332 -9.84667 -9.53862 -9.38731 -9.08987 -8.97786 -8.79069 -8.26572 -6.52635 -6.24105 -3.94786 1.45730 2.05374 2.61691 3.02463 3.08841 3.21074 3.25555 3.29518 3.59986 3.71336 3.90899 4.10611 4.18186 4.22972 4.40263 4.47535 4.59164 4.66072 4.79697 4.80329 4.88307 5.02799 5.10663 5.10975 5.17807 5.22498 5.31044 5.37926 5.42711 5.49712 5.58352 5.65164 5.65890 5.74456 5.82948 5.84887 5.86071 6.05745 6.11100 6.22954 6.41556 6.56700 6.68241 6.95952 7.56622 7.71393 8.32374 8.46471 8.61533 9.21104 10.83187 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013847 B = 0.001989 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.556830 B =14073.623583 C =15272.143313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.088 0.912 4 C -0.122 4.122 5 C 0.058 3.942 6 N -0.676 5.676 7 C 0.173 3.827 8 H 0.094 0.906 9 C -0.179 4.179 10 C 0.192 3.808 11 N -0.281 5.281 12 N -0.299 5.299 13 C 0.144 3.856 14 N -0.477 5.477 15 C 0.070 3.930 16 N -0.735 5.735 17 C 0.532 3.468 18 O -0.518 6.518 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.353 0.647 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.217 0.783 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.396 0.604 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.282 -3.892 -25.099 26.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.106 0.894 4 C -0.161 4.161 5 C -0.070 4.070 6 N -0.308 5.308 7 C 0.060 3.940 8 H 0.112 0.888 9 C -0.238 4.238 10 C -0.076 4.076 11 N -0.121 5.121 12 N -0.138 5.138 13 C -0.144 4.144 14 N -0.168 5.168 15 C -0.074 4.074 16 N -0.389 5.389 17 C 0.318 3.682 18 O -0.392 6.392 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.173 0.827 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.233 0.767 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.229 0.771 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.894 -2.351 -25.874 26.641 hybrid contribution 2.027 -1.956 1.870 3.381 sum 7.921 -4.307 -24.004 25.642 Atomic orbital electron populations 1.22165 0.95247 1.02061 1.02662 1.20857 0.94097 0.97630 0.83511 0.89391 1.21848 0.94720 1.01525 0.97974 1.22059 0.95352 0.99401 0.90231 1.60265 1.07437 1.22064 1.40984 1.19663 0.89399 1.00029 0.84866 0.88822 1.22481 1.01703 0.99165 1.00482 1.24726 0.92539 0.92169 0.98168 1.74214 1.21059 1.20503 0.96279 1.74272 1.08161 1.15142 1.16244 1.26421 1.03364 0.97120 0.87453 1.46182 1.32421 1.27342 1.10873 1.22153 0.96414 0.87702 1.01082 1.46148 1.69334 1.13787 1.09649 1.20288 0.76860 0.87236 0.83777 1.90700 1.48293 1.15796 1.84383 1.23536 1.03539 1.04873 0.98514 1.85390 1.86329 1.12847 0.98758 1.22825 1.51067 0.98142 0.96423 0.91021 1.24992 0.95104 0.95545 0.97942 1.70009 1.45436 1.13212 1.21609 0.86230 0.79296 0.80039 0.79973 1.19970 1.20803 1.19923 0.92584 0.91673 0.91869 0.89520 0.91265 0.94187 0.90725 0.82667 0.91027 0.91884 0.90850 0.76659 0.89667 0.89028 0.88771 0.77064 0.89309 0.89434 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.48 37.16 0.35 -1.38 16 2 C 0.14 1.54 2.57 -67.92 -0.17 1.37 16 3 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 4 C -0.12 -0.95 5.01 -26.73 -0.13 -1.09 16 5 C 0.06 0.46 5.37 -3.82 -0.02 0.44 16 6 N -0.68 -5.44 6.23 -107.95 -0.67 -6.11 16 7 C 0.17 1.30 2.90 -68.87 -0.20 1.10 16 8 H 0.09 0.59 6.89 -51.93 -0.36 0.23 16 9 C -0.18 -1.20 9.14 37.16 0.34 -0.86 16 10 C 0.19 1.81 6.87 -154.99 -1.07 0.75 16 11 N -0.28 -3.51 12.21 32.79 0.40 -3.11 16 12 N -0.30 -3.62 12.21 29.69 0.36 -3.26 16 13 C 0.14 1.12 12.74 -89.95 -1.15 -0.02 16 14 N -0.48 -3.35 3.15 -122.69 -0.39 -3.73 16 15 C 0.07 0.18 10.84 59.85 0.65 0.83 16 16 N -0.73 -8.92 4.53 -53.80 -0.24 -9.17 16 17 C 0.53 9.39 7.81 -10.99 -0.09 9.30 16 18 O -0.52 -11.26 15.53 5.55 0.09 -11.17 16 19 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 20 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 21 C -0.54 -15.05 9.50 30.94 0.29 -14.76 16 22 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 23 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 24 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 25 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.04 0.32 7.04 -51.93 -0.37 -0.05 16 35 H 0.07 0.64 8.06 -51.93 -0.42 0.22 16 36 H 0.35 2.81 8.47 -39.29 -0.33 2.47 16 37 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.47 7.45 -51.93 -0.39 0.08 16 40 H 0.22 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.09 0.18 7.46 -51.93 -0.39 -0.21 16 43 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 44 H 0.40 3.74 8.60 -40.82 -0.35 3.39 16 45 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 46 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 47 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 407.70 15.07 6.14 6.14 Total: -1.00 -37.81 407.70 -9.49 -47.30 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.61 Total: 1.05 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -1.07 Total: -5.12 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.19 Total: -50.51 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.81 -9.49 -47.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272658581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.848 kcal (2) G-P(sol) polarization free energy of solvation -37.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds