Wall clock time and date at job start Sat Apr 11 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47110 * 2 1 4 4 C 1.52998 * 109.47264 * 239.99758 * 2 1 3 5 5 C 1.52998 * 109.47260 * 175.00203 * 4 2 1 6 6 N 1.46901 * 109.47178 * 179.97438 * 5 4 2 7 7 C 1.46902 * 111.00248 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.46723 * 324.99913 * 7 6 5 9 9 C 1.52998 * 109.47225 * 84.99616 * 7 6 5 10 10 C 1.50697 * 109.47211 * 205.00168 * 7 6 5 11 11 N 1.30519 * 126.34476 * 314.99576 * 10 7 6 12 12 N 1.28600 * 109.66808 * 179.73098 * 11 10 7 13 13 C 1.30516 * 109.67696 * 0.44987 * 12 11 10 14 14 N 1.35495 * 107.30468 * 359.55808 * 13 12 11 15 15 C 1.46499 * 126.97946 * 180.26092 * 14 13 12 16 16 N 1.46510 * 109.46952 * 119.99849 * 2 1 3 17 17 C 1.34771 * 119.99779 * 274.99734 * 16 2 1 18 18 O 1.21286 * 120.00296 * 0.02562 * 17 16 2 19 19 C 1.50699 * 120.00017 * 179.97438 * 17 16 2 20 20 S 1.81001 * 109.47433 * 180.02562 * 19 17 16 21 21 C 1.76197 * 100.00192 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99951 * 359.97438 * 21 20 19 23 23 C 1.38799 * 119.99978 * 180.02562 * 21 20 19 24 24 N 1.31635 * 119.99914 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00056 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47148 * 59.99254 * 25 23 21 27 27 H 1.48497 * 109.47316 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46869 * 299.99606 * 25 23 21 29 29 H 1.08999 * 109.47110 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.46874 * 300.00172 * 1 2 3 31 31 H 1.08997 * 109.46688 * 60.00103 * 1 2 3 32 32 H 1.08999 * 109.47156 * 55.00177 * 4 2 1 33 33 H 1.09004 * 109.47094 * 294.99739 * 4 2 1 34 34 H 1.09006 * 109.47279 * 60.00174 * 5 4 2 35 35 H 1.09000 * 109.47137 * 299.99939 * 5 4 2 36 36 H 1.00904 * 110.99878 * 303.95099 * 6 5 4 37 37 H 1.09007 * 109.47028 * 60.00483 * 9 7 6 38 38 H 1.09003 * 109.46994 * 180.02562 * 9 7 6 39 39 H 1.08997 * 109.47278 * 300.00669 * 9 7 6 40 40 H 1.08002 * 126.35125 * 179.82818 * 13 12 11 41 41 H 1.09004 * 109.47293 * 90.03308 * 15 14 13 42 42 H 1.09007 * 109.47309 * 210.02845 * 15 14 13 43 43 H 1.09000 * 109.47123 * 330.02746 * 15 14 13 44 44 H 0.97000 * 119.99773 * 94.99949 * 16 2 1 45 45 H 1.08997 * 109.47124 * 300.00792 * 19 17 16 46 46 H 1.08998 * 109.46854 * 60.00096 * 19 17 16 47 47 H 0.96999 * 119.99544 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 7 4.0546 -1.3064 -2.5127 7 6 5.5182 -1.2240 -2.6076 8 1 5.8534 -0.2601 -2.2245 9 6 6.1470 -2.3477 -1.7813 10 6 5.9370 -1.3650 -4.0483 11 7 5.4865 -2.2432 -4.9024 12 7 6.0582 -2.0721 -6.0415 13 6 6.9064 -1.0831 -5.9633 14 7 6.8509 -0.6037 -4.6972 15 6 7.6224 0.5113 -4.1425 16 7 2.0184 -0.6906 1.1963 17 6 2.1471 -0.0182 2.3571 18 8 1.8582 1.1585 2.4117 19 6 2.6488 -0.7287 3.5878 20 16 2.7092 0.4342 4.9735 21 6 3.3124 -0.6309 6.2408 22 1 3.5217 -1.6674 6.0209 23 6 3.5177 -0.1381 7.5221 24 7 3.2621 1.1250 7.7902 25 14 4.1565 -1.2675 8.8659 26 1 5.4834 -1.8051 8.4713 27 1 4.2890 -0.5040 10.1327 28 1 3.2055 -2.3911 9.0617 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.6055 -0.2618 -2.1369 33 1 1.7517 -1.7716 -1.2055 34 1 3.9995 -1.0729 -0.4258 35 1 3.8533 0.4369 -1.3573 36 1 3.7452 -2.2668 -2.5270 37 1 5.8118 -3.3116 -2.1644 38 1 7.2330 -2.2862 -1.8514 39 1 5.8441 -2.2457 -0.7393 40 1 7.5328 -0.7124 -6.7611 41 1 7.0710 1.4408 -4.2842 42 1 7.7869 0.3452 -3.0778 43 1 8.5834 0.5775 -4.6526 44 1 2.2490 -1.6318 1.1527 45 1 1.9759 -1.5505 3.8326 46 1 3.6479 -1.1213 3.3987 47 1 3.4059 1.4694 8.6856 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272658581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:51 Heat of formation + Delta-G solvation = 7.755632 kcal Electronic energy + Delta-G solvation = -26579.166120 eV Core-core repulsion = 22730.326787 eV Total energy + Delta-G solvation = -3848.839333 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.03529 -40.77600 -38.60030 -36.90895 -35.89200 -34.57598 -33.59551 -32.26614 -30.50013 -29.90377 -28.49806 -28.42540 -27.64381 -25.03028 -23.78953 -23.04109 -22.31568 -21.58268 -21.16816 -19.81748 -18.15895 -17.89373 -17.38445 -17.21282 -16.86984 -16.74472 -16.31701 -16.23944 -16.07669 -15.69586 -15.33576 -14.82478 -14.70065 -14.43752 -14.32599 -14.12944 -14.03359 -13.75867 -13.65920 -13.24633 -13.15989 -13.09889 -12.94464 -12.86214 -12.59883 -12.59203 -12.36954 -12.30267 -11.98674 -11.79198 -11.70862 -11.27119 -11.12254 -11.06056 -10.86611 -10.25933 -10.23210 -10.08826 -9.45496 -8.65028 -8.33774 -6.11390 0.88972 1.28424 1.43882 1.47898 1.57745 1.60492 1.67360 1.93152 2.27447 2.35510 3.00169 3.01068 3.33325 3.34289 3.72709 3.86136 3.89939 3.95842 3.99830 4.04309 4.10680 4.23685 4.32569 4.37054 4.44918 4.47238 4.52507 4.54732 4.62342 4.67220 4.69397 4.78589 4.83913 4.94341 4.99893 5.11429 5.13838 5.21676 5.25419 5.34503 5.42345 5.61155 5.88130 6.02954 6.20322 6.35325 6.57703 7.07539 7.31764 7.80214 8.74978 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013847 B = 0.001989 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.556830 B =14073.623583 C =15272.143313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 H 0.067 0.933 4 C -0.109 4.109 5 C 0.064 3.936 6 N -0.681 5.681 7 C 0.175 3.825 8 H 0.107 0.893 9 C -0.171 4.171 10 C 0.186 3.814 11 N -0.324 5.324 12 N -0.353 5.353 13 C 0.156 3.844 14 N -0.475 5.475 15 C 0.061 3.939 16 N -0.707 5.707 17 C 0.536 3.464 18 O -0.565 6.565 19 C -0.130 4.130 20 S -0.151 6.151 21 C -0.546 4.546 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.997 3.003 26 H -0.261 1.261 27 H -0.280 1.280 28 H -0.263 1.263 29 H 0.071 0.929 30 H 0.031 0.969 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.354 0.646 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.257 0.743 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.120 0.880 44 H 0.414 0.586 45 H 0.106 0.894 46 H 0.110 0.890 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.571 -5.386 -25.933 27.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.041 3.959 3 H 0.085 0.915 4 C -0.147 4.147 5 C -0.065 4.065 6 N -0.313 5.313 7 C 0.063 3.937 8 H 0.124 0.876 9 C -0.231 4.231 10 C -0.084 4.084 11 N -0.164 5.164 12 N -0.192 5.192 13 C -0.132 4.132 14 N -0.165 5.165 15 C -0.080 4.080 16 N -0.361 5.361 17 C 0.321 3.679 18 O -0.444 6.444 19 C -0.281 4.281 20 S 0.076 5.924 21 C -0.694 4.694 22 H 0.100 0.900 23 C -0.192 4.192 24 N -0.547 5.547 25 Si 0.818 3.182 26 H -0.186 1.186 27 H -0.205 1.205 28 H -0.188 1.188 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.174 0.826 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.273 0.727 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.139 0.861 44 H 0.251 0.749 45 H 0.124 0.876 46 H 0.128 0.872 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.190 -3.883 -26.752 27.972 hybrid contribution 1.636 -1.466 1.965 2.947 sum 8.826 -5.349 -24.786 26.849 Atomic orbital electron populations 1.22133 0.94870 1.02843 1.01965 1.20961 0.94329 0.96910 0.83716 0.91484 1.21724 0.94629 1.02125 0.96213 1.21977 0.95278 0.98989 0.90269 1.60220 1.08014 1.22151 1.40936 1.19740 0.89070 1.00850 0.84084 0.87558 1.22405 1.01917 0.98317 1.00468 1.25008 0.92779 0.92035 0.98565 1.74090 1.22774 1.22421 0.97098 1.74156 1.10394 1.17760 1.16885 1.27173 1.02065 0.95551 0.88455 1.46431 1.31952 1.27671 1.10487 1.22503 0.97205 0.86457 1.01817 1.45896 1.67385 1.14437 1.08399 1.20003 0.76700 0.86560 0.84611 1.90693 1.50712 1.17814 1.85142 1.23382 1.05466 1.03124 0.96172 1.85571 1.86722 1.17271 1.02804 1.23170 1.50864 0.98490 0.96886 0.89960 1.26115 0.95140 0.97181 1.00739 1.70178 1.46811 1.15453 1.22274 0.85027 0.79107 0.77764 0.76253 1.18590 1.20489 1.18764 0.91010 0.94957 0.90026 0.88946 0.89485 0.94039 0.91454 0.82621 0.92132 0.91413 0.90269 0.72700 0.88856 0.88247 0.86108 0.74931 0.87551 0.87226 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 9.48 71.98 0.68 -2.49 16 2 C 0.15 2.89 2.57 44.99 0.12 3.01 16 3 H 0.07 1.68 7.58 -2.39 -0.02 1.66 16 4 C -0.11 -1.43 5.01 30.59 0.15 -1.28 16 5 C 0.06 0.87 5.37 86.30 0.46 1.33 16 6 N -0.68 -9.93 6.23 -495.44 -3.09 -13.02 16 7 C 0.18 2.37 2.90 44.17 0.13 2.50 16 8 H 0.11 1.14 6.89 -2.38 -0.02 1.12 16 9 C -0.17 -2.07 9.14 71.98 0.66 -1.41 16 10 C 0.19 3.34 6.87 137.98 0.95 4.29 16 11 N -0.32 -8.12 12.21 -50.16 -0.61 -8.73 16 12 N -0.35 -8.51 12.21 -59.99 -0.73 -9.24 16 13 C 0.16 2.19 12.74 180.11 2.30 4.49 16 14 N -0.47 -5.83 3.15 -542.06 -1.71 -7.53 16 15 C 0.06 0.16 10.84 127.77 1.38 1.55 16 16 N -0.71 -15.87 4.53 -442.52 -2.00 -17.87 16 17 C 0.54 18.57 7.81 87.66 0.68 19.25 16 18 O -0.57 -25.16 15.53 -3.05 -0.05 -25.21 16 19 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 20 S -0.15 -8.20 20.57 -56.49 -1.16 -9.36 16 21 C -0.55 -30.66 9.50 67.95 0.65 -30.01 16 22 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 23 C 0.01 0.73 5.49 84.86 0.47 1.20 16 24 N -0.91 -55.36 13.22 21.65 0.29 -55.07 16 25 Si 1.00 42.92 29.55 68.60 2.03 44.94 16 26 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 27 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 28 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.04 0.56 7.04 -2.38 -0.02 0.54 16 35 H 0.07 1.05 8.06 -2.39 -0.02 1.03 16 36 H 0.35 5.12 8.47 -89.69 -0.76 4.36 16 37 H 0.06 0.87 8.13 -2.38 -0.02 0.85 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 0.85 7.45 -2.39 -0.02 0.84 16 40 H 0.26 0.93 8.06 -2.91 -0.02 0.91 16 41 H 0.09 0.14 8.14 -2.38 -0.02 0.12 16 42 H 0.10 0.13 7.46 -2.38 -0.02 0.11 16 43 H 0.12 -0.31 8.14 -2.39 -0.02 -0.33 16 44 H 0.41 6.52 8.60 -92.71 -0.80 5.72 16 45 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 46 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 47 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -86.55 407.70 1.45 -85.09 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -0.57 Total: 18.07 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 9.06 Total: -2.06 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -7.86 Total: -111.47 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.36 kcal Total: -86.55 1.45 -85.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272658581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.849 kcal (2) G-P(sol) polarization free energy of solvation -86.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds