Wall clock time and date at job start Sat Apr 11 2020 06:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47025 * 2 1 4 4 C 1.52996 * 109.47050 * 120.00638 * 2 1 3 5 5 C 1.53004 * 109.46700 * 184.99710 * 4 2 1 6 6 N 1.46901 * 109.46916 * 179.97438 * 5 4 2 7 7 C 1.46905 * 110.99870 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47224 * 325.00460 * 7 6 5 9 9 C 1.53002 * 109.47102 * 85.00132 * 7 6 5 10 10 C 1.50702 * 109.47206 * 205.00135 * 7 6 5 11 11 N 1.30519 * 126.34546 * 315.02880 * 10 7 6 12 12 N 1.28594 * 109.67175 * 179.97438 * 11 10 7 13 13 C 1.30511 * 109.67361 * 359.97438 * 12 11 10 14 14 N 1.35489 * 126.34415 * 134.71330 * 10 7 6 15 15 C 1.46494 * 126.98372 * 0.03663 * 14 10 7 16 16 N 1.46500 * 109.46600 * 240.00522 * 2 1 3 17 17 C 1.34777 * 119.99967 * 84.99983 * 16 2 1 18 18 O 1.21276 * 120.00179 * 359.97438 * 17 16 2 19 19 C 1.50700 * 119.99992 * 179.97438 * 17 16 2 20 20 S 1.81001 * 109.47369 * 179.97438 * 19 17 16 21 21 C 1.76196 * 100.00211 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00013 * 0.02562 * 21 20 19 23 23 C 1.38801 * 120.00000 * 179.97438 * 21 20 19 24 24 N 1.31632 * 120.00204 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99805 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47016 * 90.00337 * 25 23 21 27 27 H 1.48504 * 109.46730 * 210.00113 * 25 23 21 28 28 H 1.48503 * 109.47164 * 330.00023 * 25 23 21 29 29 H 1.09002 * 109.47025 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46635 * 299.99136 * 1 2 3 31 31 H 1.08993 * 109.47342 * 59.99437 * 1 2 3 32 32 H 1.08995 * 109.47485 * 65.00366 * 4 2 1 33 33 H 1.08996 * 109.47010 * 304.99158 * 4 2 1 34 34 H 1.09004 * 109.46889 * 60.00145 * 5 4 2 35 35 H 1.08995 * 109.47384 * 299.99786 * 5 4 2 36 36 H 1.00901 * 111.00067 * 303.95263 * 6 5 4 37 37 H 1.08996 * 109.46950 * 299.99914 * 9 7 6 38 38 H 1.09003 * 109.46813 * 60.00077 * 9 7 6 39 39 H 1.08999 * 109.47105 * 180.02562 * 9 7 6 40 40 H 1.08001 * 126.35021 * 180.02562 * 13 12 11 41 41 H 1.09001 * 109.47067 * 89.99767 * 15 14 10 42 42 H 1.09004 * 109.47477 * 210.00002 * 15 14 10 43 43 H 1.09000 * 109.47112 * 329.99838 * 15 14 10 44 44 H 0.96998 * 119.99992 * 264.99192 * 16 2 1 45 45 H 1.09005 * 109.47304 * 300.00190 * 19 17 16 46 46 H 1.09000 * 109.46922 * 60.00152 * 19 17 16 47 47 H 0.96995 * 120.00303 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5649 -0.6134 1.3135 6 7 4.0545 -1.3055 2.5132 7 6 5.5181 -1.2220 2.6086 8 1 5.9501 -1.2580 1.6085 9 6 5.9108 0.0922 3.2866 10 6 6.0355 -2.3807 3.4215 11 7 5.5419 -2.8167 4.5483 12 7 6.2309 -3.8199 4.9634 13 6 7.1950 -4.0699 4.1200 14 7 7.0956 -3.1667 3.1148 15 6 7.9606 -3.0599 1.9373 16 7 2.0183 -0.6905 -1.1963 17 6 2.1469 -0.0181 -2.3572 18 8 1.8581 1.1585 -2.4117 19 6 2.6497 -0.7282 -3.5876 20 16 2.7097 0.4347 -4.9733 21 6 3.3142 -0.6301 -6.2404 22 1 3.5242 -1.6664 -6.0203 23 6 3.5195 -0.1372 -7.5216 24 7 3.2631 1.1256 -7.7900 25 14 4.1598 -1.2663 -8.8651 26 1 3.0147 -1.9048 -9.5624 27 1 4.9540 -0.4755 -9.8393 28 1 5.0196 -2.3159 -8.2615 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.7518 -1.7716 1.2054 33 1 1.6055 -0.2619 2.1369 34 1 3.8532 0.4369 1.3572 35 1 3.9995 -1.0729 0.4258 36 1 3.6168 -0.9400 3.3455 37 1 5.5366 0.9303 2.6987 38 1 5.4788 0.1283 4.2867 39 1 6.9967 0.1544 3.3570 40 1 7.9329 -4.8539 4.2053 41 1 8.7962 -2.3962 2.1593 42 1 8.3406 -4.0473 1.6748 43 1 7.3885 -2.6569 1.1017 44 1 2.2490 -1.6316 -1.1528 45 1 3.6490 -1.1201 -3.3981 46 1 1.9774 -1.5505 -3.8327 47 1 3.4069 1.4701 -8.6852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272658582.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:55 Heat of formation + Delta-G solvation = 34.484946 kcal Electronic energy + Delta-G solvation = -26643.632301 eV Core-core repulsion = 22795.952039 eV Total energy + Delta-G solvation = -3847.680263 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.40261 -39.49705 -37.86003 -35.92490 -35.33324 -32.65821 -32.45623 -31.26369 -29.77546 -28.56989 -28.05847 -27.81693 -25.51370 -24.40668 -23.08014 -22.37048 -21.41423 -20.57275 -20.30572 -17.88567 -17.62050 -16.73881 -16.58321 -16.27176 -15.95733 -15.64838 -15.17989 -14.92776 -14.83308 -14.75289 -14.17654 -13.92701 -13.80772 -13.55293 -13.40231 -13.36046 -13.19044 -12.82624 -12.62606 -12.49677 -12.12305 -11.95792 -11.92165 -11.72395 -11.49684 -11.30410 -11.09368 -11.05429 -10.91529 -10.78412 -10.61494 -10.53958 -9.84189 -9.52949 -9.38490 -9.10013 -8.91306 -8.85081 -8.26292 -6.52906 -6.24698 -3.95220 1.47374 2.07190 2.62703 3.02571 3.09264 3.19437 3.25520 3.29676 3.60139 3.71684 3.91599 4.14352 4.17543 4.23147 4.37788 4.55021 4.55555 4.71711 4.78813 4.81617 4.85662 5.02279 5.09576 5.10443 5.17162 5.22590 5.34097 5.36784 5.41051 5.51622 5.58873 5.63340 5.65900 5.72120 5.80791 5.85312 5.86301 6.07416 6.11329 6.22749 6.42532 6.56804 6.69131 6.95794 7.56408 7.72786 8.32074 8.47601 8.62162 9.20627 10.82672 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011181 B = 0.002194 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.640472 B =12760.453214 C =14577.528565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.087 0.913 4 C -0.123 4.123 5 C 0.058 3.942 6 N -0.675 5.675 7 C 0.173 3.827 8 H 0.094 0.906 9 C -0.177 4.177 10 C 0.192 3.808 11 N -0.281 5.281 12 N -0.299 5.299 13 C 0.144 3.856 14 N -0.476 5.476 15 C 0.069 3.931 16 N -0.734 5.734 17 C 0.532 3.468 18 O -0.518 6.518 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.273 1.273 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.353 0.647 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.217 0.783 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.397 0.603 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.602 -7.796 22.700 25.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.105 0.895 4 C -0.161 4.161 5 C -0.071 4.071 6 N -0.307 5.307 7 C 0.060 3.940 8 H 0.112 0.888 9 C -0.237 4.237 10 C -0.077 4.077 11 N -0.121 5.121 12 N -0.138 5.138 13 C -0.143 4.143 14 N -0.167 5.167 15 C -0.074 4.074 16 N -0.389 5.389 17 C 0.318 3.682 18 O -0.392 6.392 19 C -0.304 4.304 20 S 0.166 5.834 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.173 0.827 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.233 0.767 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.231 0.769 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.235 -6.424 23.377 25.033 hybrid contribution 1.997 -1.749 -1.755 3.182 sum 8.232 -8.173 21.623 24.538 Atomic orbital electron populations 1.22169 0.95260 1.02102 1.02623 1.20848 0.94088 0.97498 0.83641 0.89501 1.21845 0.94530 1.02134 0.97609 1.22063 0.95598 0.96656 0.92736 1.60268 1.02925 1.61006 1.06543 1.19671 0.89703 0.88022 0.96578 0.88779 1.22465 1.02632 0.96540 1.02080 1.24705 0.88852 0.97625 0.96477 1.74205 1.21907 1.07247 1.08759 1.74265 1.04531 1.10888 1.24149 1.26425 1.02750 0.97758 0.87398 1.46181 1.25017 1.25140 1.20386 1.22166 0.94428 1.04958 0.85840 1.46141 1.69277 1.13879 1.09570 1.20287 0.76875 0.87225 0.83783 1.90696 1.48337 1.15804 1.84384 1.23536 1.03539 1.04861 0.98501 1.85396 1.86300 1.12893 0.98792 1.22862 1.50906 0.98180 0.96421 0.90983 1.24995 0.95130 0.95529 0.97952 1.70015 1.45550 1.13206 1.21493 0.86175 0.78847 0.79942 0.80567 1.20252 1.20752 1.19732 0.92530 0.91931 0.91664 0.90365 0.90379 0.94444 0.90516 0.82692 0.90972 0.91061 0.91876 0.76657 0.89788 0.88698 0.88870 0.76909 0.89432 0.89305 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.48 37.16 0.35 -1.37 16 2 C 0.14 1.54 2.57 -67.93 -0.17 1.37 16 3 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 4 C -0.12 -0.96 5.01 -26.73 -0.13 -1.09 16 5 C 0.06 0.46 5.37 -3.82 -0.02 0.44 16 6 N -0.68 -5.43 6.23 -107.94 -0.67 -6.11 16 7 C 0.17 1.30 2.98 -68.86 -0.21 1.09 16 8 H 0.09 0.61 6.56 -51.93 -0.34 0.27 16 9 C -0.18 -1.15 9.14 37.16 0.34 -0.81 16 10 C 0.19 1.83 6.87 -154.99 -1.07 0.76 16 11 N -0.28 -3.53 12.21 32.80 0.40 -3.13 16 12 N -0.30 -3.66 12.21 29.69 0.36 -3.30 16 13 C 0.14 1.16 12.74 -89.95 -1.15 0.01 16 14 N -0.48 -3.47 3.15 -122.69 -0.39 -3.85 16 15 C 0.07 0.21 11.00 59.84 0.66 0.87 16 16 N -0.73 -9.04 4.53 -53.80 -0.24 -9.28 16 17 C 0.53 9.41 7.81 -10.99 -0.09 9.32 16 18 O -0.52 -11.27 15.52 5.56 0.09 -11.18 16 19 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 20 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 21 C -0.54 -14.99 9.50 30.94 0.29 -14.70 16 22 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 24 N -0.87 -25.83 13.22 55.49 0.73 -25.09 16 25 Si 0.92 21.06 29.55 -169.99 -5.02 16.03 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.04 0.30 7.43 -51.93 -0.39 -0.09 16 35 H 0.08 0.66 7.67 -51.93 -0.40 0.26 16 36 H 0.35 2.78 8.47 -39.29 -0.33 2.45 16 37 H 0.07 0.43 7.45 -51.93 -0.39 0.04 16 38 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.22 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 43 H 0.09 0.27 7.06 -51.93 -0.37 -0.10 16 44 H 0.40 3.92 8.60 -40.82 -0.35 3.57 16 45 H 0.09 1.55 8.14 -51.91 -0.42 1.13 16 46 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 47 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 407.21 15.07 6.14 6.14 Total: -1.00 -37.67 407.21 -9.45 -47.12 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.57 Total: 1.38 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -1.06 Total: -4.90 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.19 Total: -50.76 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.67 -9.45 -47.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272658582.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.603 kcal (2) G-P(sol) polarization free energy of solvation -37.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds