Wall clock time and date at job start Sat Apr 11 2020 06:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47025 * 2 1 4 4 C 1.52996 * 109.47050 * 120.00638 * 2 1 3 5 5 C 1.53004 * 109.46700 * 184.99710 * 4 2 1 6 6 N 1.46901 * 109.46916 * 179.97438 * 5 4 2 7 7 C 1.46905 * 110.99870 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47224 * 325.00460 * 7 6 5 9 9 C 1.53002 * 109.47102 * 85.00132 * 7 6 5 10 10 C 1.50702 * 109.47206 * 205.00135 * 7 6 5 11 11 N 1.30519 * 126.34546 * 315.02880 * 10 7 6 12 12 N 1.28594 * 109.67175 * 179.97438 * 11 10 7 13 13 C 1.30511 * 109.67361 * 359.97438 * 12 11 10 14 14 N 1.35489 * 126.34415 * 134.71330 * 10 7 6 15 15 C 1.46494 * 126.98372 * 0.03663 * 14 10 7 16 16 N 1.46500 * 109.46600 * 240.00522 * 2 1 3 17 17 C 1.34777 * 119.99967 * 84.99983 * 16 2 1 18 18 O 1.21276 * 120.00179 * 359.97438 * 17 16 2 19 19 C 1.50700 * 119.99992 * 179.97438 * 17 16 2 20 20 S 1.81001 * 109.47369 * 179.97438 * 19 17 16 21 21 C 1.76196 * 100.00211 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00013 * 0.02562 * 21 20 19 23 23 C 1.38801 * 120.00000 * 179.97438 * 21 20 19 24 24 N 1.31632 * 120.00204 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99805 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47016 * 90.00337 * 25 23 21 27 27 H 1.48504 * 109.46730 * 210.00113 * 25 23 21 28 28 H 1.48503 * 109.47164 * 330.00023 * 25 23 21 29 29 H 1.09002 * 109.47025 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46635 * 299.99136 * 1 2 3 31 31 H 1.08993 * 109.47342 * 59.99437 * 1 2 3 32 32 H 1.08995 * 109.47485 * 65.00366 * 4 2 1 33 33 H 1.08996 * 109.47010 * 304.99158 * 4 2 1 34 34 H 1.09004 * 109.46889 * 60.00145 * 5 4 2 35 35 H 1.08995 * 109.47384 * 299.99786 * 5 4 2 36 36 H 1.00901 * 111.00067 * 303.95263 * 6 5 4 37 37 H 1.08996 * 109.46950 * 299.99914 * 9 7 6 38 38 H 1.09003 * 109.46813 * 60.00077 * 9 7 6 39 39 H 1.08999 * 109.47105 * 180.02562 * 9 7 6 40 40 H 1.08001 * 126.35021 * 180.02562 * 13 12 11 41 41 H 1.09001 * 109.47067 * 89.99767 * 15 14 10 42 42 H 1.09004 * 109.47477 * 210.00002 * 15 14 10 43 43 H 1.09000 * 109.47112 * 329.99838 * 15 14 10 44 44 H 0.96998 * 119.99992 * 264.99192 * 16 2 1 45 45 H 1.09005 * 109.47304 * 300.00190 * 19 17 16 46 46 H 1.09000 * 109.46922 * 60.00152 * 19 17 16 47 47 H 0.96995 * 120.00303 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5649 -0.6134 1.3135 6 7 4.0545 -1.3055 2.5132 7 6 5.5181 -1.2220 2.6086 8 1 5.9501 -1.2580 1.6085 9 6 5.9108 0.0922 3.2866 10 6 6.0355 -2.3807 3.4215 11 7 5.5419 -2.8167 4.5483 12 7 6.2309 -3.8199 4.9634 13 6 7.1950 -4.0699 4.1200 14 7 7.0956 -3.1667 3.1148 15 6 7.9606 -3.0599 1.9373 16 7 2.0183 -0.6905 -1.1963 17 6 2.1469 -0.0181 -2.3572 18 8 1.8581 1.1585 -2.4117 19 6 2.6497 -0.7282 -3.5876 20 16 2.7097 0.4347 -4.9733 21 6 3.3142 -0.6301 -6.2404 22 1 3.5242 -1.6664 -6.0203 23 6 3.5195 -0.1372 -7.5216 24 7 3.2631 1.1256 -7.7900 25 14 4.1598 -1.2663 -8.8651 26 1 3.0147 -1.9048 -9.5624 27 1 4.9540 -0.4755 -9.8393 28 1 5.0196 -2.3159 -8.2615 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.7518 -1.7716 1.2054 33 1 1.6055 -0.2619 2.1369 34 1 3.8532 0.4369 1.3572 35 1 3.9995 -1.0729 0.4258 36 1 3.6168 -0.9400 3.3455 37 1 5.5366 0.9303 2.6987 38 1 5.4788 0.1283 4.2867 39 1 6.9967 0.1544 3.3570 40 1 7.9329 -4.8539 4.2053 41 1 8.7962 -2.3962 2.1593 42 1 8.3406 -4.0473 1.6748 43 1 7.3885 -2.6569 1.1017 44 1 2.2490 -1.6316 -1.1528 45 1 3.6490 -1.1201 -3.3981 46 1 1.9774 -1.5505 -3.8327 47 1 3.4069 1.4701 -8.6852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272658582.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:54 Heat of formation + Delta-G solvation = 7.886726 kcal Electronic energy + Delta-G solvation = -26644.785687 eV Core-core repulsion = 22795.952039 eV Total energy + Delta-G solvation = -3848.833648 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.03581 -40.77186 -38.60038 -36.91069 -35.89238 -34.57623 -33.59417 -32.26129 -30.49994 -29.90660 -28.50173 -28.42031 -27.64594 -25.04423 -23.78430 -23.03717 -22.33165 -21.53195 -21.18867 -19.81676 -18.17741 -17.87826 -17.36819 -17.27989 -16.87100 -16.65602 -16.34700 -16.30043 -16.05646 -15.61563 -15.39275 -14.70386 -14.68946 -14.55034 -14.29953 -14.22842 -13.96868 -13.79250 -13.65955 -13.28354 -13.15519 -13.07540 -12.94472 -12.88794 -12.59497 -12.56473 -12.35824 -12.22170 -12.09192 -11.74868 -11.68978 -11.27745 -11.13695 -11.06079 -10.86488 -10.25444 -10.23946 -10.05876 -9.47683 -8.65043 -8.33849 -6.11429 0.89417 1.28654 1.42731 1.48580 1.58573 1.60387 1.67527 1.93168 2.27387 2.36016 3.00267 3.00677 3.33143 3.34411 3.72934 3.86256 3.89204 3.95389 3.99548 4.07457 4.12311 4.15060 4.32684 4.37713 4.46409 4.47540 4.52964 4.55363 4.62128 4.67347 4.70212 4.77565 4.85400 4.93946 4.97691 5.10869 5.11660 5.23602 5.25536 5.34704 5.42635 5.61361 5.87966 6.02672 6.20593 6.34457 6.57762 7.07582 7.31721 7.80283 8.75201 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011181 B = 0.002194 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.640472 B =12760.453214 C =14577.528565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.068 0.932 4 C -0.109 4.109 5 C 0.063 3.937 6 N -0.680 5.680 7 C 0.175 3.825 8 H 0.107 0.893 9 C -0.170 4.170 10 C 0.187 3.813 11 N -0.324 5.324 12 N -0.352 5.352 13 C 0.155 3.845 14 N -0.474 5.474 15 C 0.061 3.939 16 N -0.707 5.707 17 C 0.536 3.464 18 O -0.565 6.565 19 C -0.130 4.130 20 S -0.151 6.151 21 C -0.545 4.545 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.270 1.270 27 H -0.278 1.278 28 H -0.257 1.257 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.031 0.969 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.036 0.964 35 H 0.072 0.928 36 H 0.353 0.647 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.256 0.744 41 H 0.099 0.901 42 H 0.117 0.883 43 H 0.096 0.904 44 H 0.413 0.587 45 H 0.110 0.890 46 H 0.106 0.894 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.946 -10.192 22.957 26.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 H 0.086 0.914 4 C -0.147 4.147 5 C -0.066 4.066 6 N -0.312 5.312 7 C 0.062 3.938 8 H 0.125 0.875 9 C -0.230 4.230 10 C -0.083 4.083 11 N -0.164 5.164 12 N -0.191 5.191 13 C -0.133 4.133 14 N -0.165 5.165 15 C -0.080 4.080 16 N -0.362 5.362 17 C 0.321 3.679 18 O -0.443 6.443 19 C -0.281 4.281 20 S 0.076 5.924 21 C -0.693 4.693 22 H 0.100 0.900 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.819 3.181 26 H -0.195 1.195 27 H -0.204 1.204 28 H -0.181 1.181 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.050 0.950 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.173 0.827 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.272 0.728 41 H 0.117 0.883 42 H 0.135 0.865 43 H 0.114 0.886 44 H 0.250 0.750 45 H 0.128 0.872 46 H 0.124 0.876 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.586 -8.865 23.674 26.393 hybrid contribution 1.594 -1.044 -1.714 2.563 sum 9.180 -9.910 21.960 25.782 Atomic orbital electron populations 1.22137 0.94869 1.02764 1.02054 1.20975 0.94336 0.96858 0.83782 0.91359 1.21730 0.94500 1.02146 0.96372 1.21987 0.95502 0.96526 0.92550 1.60238 1.03417 1.61051 1.06524 1.19756 0.89375 0.87711 0.96964 0.87514 1.22391 1.02897 0.96272 1.01456 1.24993 0.89334 0.98010 0.96004 1.74087 1.23526 1.08292 1.10479 1.74153 1.06537 1.12045 1.26391 1.27162 1.01958 0.97769 0.86401 1.46425 1.24725 1.24216 1.21112 1.22501 0.94248 1.06849 0.84377 1.45911 1.67360 1.14454 1.08430 1.20002 0.76714 0.86553 0.84598 1.90689 1.50737 1.17789 1.85133 1.23382 1.05462 1.03105 0.96173 1.85580 1.86699 1.17306 1.02833 1.23197 1.50710 0.98491 0.96868 0.89956 1.26123 0.95165 0.97169 1.00753 1.70182 1.46919 1.15471 1.22209 0.84967 0.78409 0.77795 0.76893 1.19494 1.20351 1.18057 0.91197 0.89819 0.94963 0.89664 0.88721 0.94579 0.90943 0.82689 0.90379 0.92140 0.91356 0.72777 0.88255 0.86459 0.88551 0.74965 0.87197 0.87614 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.48 71.98 0.68 -2.48 16 2 C 0.15 2.88 2.57 44.99 0.12 2.99 16 3 H 0.07 1.67 7.58 -2.39 -0.02 1.66 16 4 C -0.11 -1.43 5.01 30.59 0.15 -1.28 16 5 C 0.06 0.86 5.37 86.30 0.46 1.33 16 6 N -0.68 -9.89 6.23 -495.42 -3.09 -12.98 16 7 C 0.17 2.36 2.98 44.17 0.13 2.50 16 8 H 0.11 1.15 6.56 -2.39 -0.02 1.13 16 9 C -0.17 -2.03 9.14 71.98 0.66 -1.37 16 10 C 0.19 3.36 6.87 137.98 0.95 4.31 16 11 N -0.32 -8.13 12.21 -50.16 -0.61 -8.74 16 12 N -0.35 -8.54 12.21 -59.99 -0.73 -9.28 16 13 C 0.16 2.24 12.74 180.11 2.30 4.54 16 14 N -0.47 -5.98 3.15 -542.09 -1.71 -7.69 16 15 C 0.06 0.20 11.00 127.77 1.41 1.61 16 16 N -0.71 -16.18 4.53 -442.53 -2.00 -18.19 16 17 C 0.54 18.64 7.81 87.66 0.68 19.32 16 18 O -0.57 -25.14 15.52 -3.02 -0.05 -25.19 16 19 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 20 S -0.15 -8.22 20.57 -56.49 -1.16 -9.38 16 21 C -0.54 -30.48 9.50 67.95 0.65 -29.83 16 22 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 23 C 0.01 0.71 5.49 84.86 0.47 1.17 16 24 N -0.91 -55.29 13.22 21.65 0.29 -55.00 16 25 Si 1.00 42.71 29.55 68.60 2.03 44.74 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 27 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 28 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.04 0.52 7.43 -2.39 -0.02 0.50 16 35 H 0.07 1.06 7.67 -2.39 -0.02 1.05 16 36 H 0.35 5.16 8.47 -89.69 -0.76 4.40 16 37 H 0.08 0.83 7.45 -2.39 -0.02 0.81 16 38 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.26 1.07 8.06 -2.91 -0.02 1.04 16 41 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.10 0.29 7.06 -2.39 -0.02 0.27 16 44 H 0.41 6.95 8.60 -92.71 -0.80 6.15 16 45 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 46 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 47 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -85.94 407.21 1.48 -84.46 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -0.57 Total: 18.92 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 9.09 Total: -1.69 kcal Atomic # 7 Polarization: -104.01 SS G_CDS: -7.86 Total: -111.87 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.05 Total: -25.19 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.16 Total: -9.38 kcal Total: -85.94 1.48 -84.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272658582.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.351 kcal (2) G-P(sol) polarization free energy of solvation -85.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds