Wall clock time and date at job start Sat Apr 11 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.46838 * 2 1 4 4 N 1.46490 * 109.47047 * 119.99742 * 2 1 3 5 5 C 1.36942 * 120.00431 * 274.99757 * 4 2 1 6 6 H 1.08003 * 119.99396 * 0.02562 * 5 4 2 7 7 C 1.38807 * 120.00532 * 179.97438 * 5 4 2 8 8 N 1.31625 * 119.99611 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00323 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46819 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47252 * 119.99883 * 9 7 5 12 12 H 1.48499 * 109.47035 * 240.00086 * 9 7 5 13 13 C 1.52997 * 109.47109 * 239.99931 * 2 1 3 14 14 H 1.09005 * 109.55438 * 185.12459 * 13 2 1 15 15 C 1.53300 * 109.51386 * 64.99947 * 13 2 1 16 16 N 1.47148 * 108.41473 * 187.79338 * 15 13 2 17 17 C 1.34786 * 120.98067 * 230.53573 * 16 15 13 18 18 O 1.21277 * 119.99865 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99669 * 180.02562 * 17 16 15 20 20 N 1.46500 * 109.46566 * 180.02562 * 19 17 16 21 21 C 1.46093 * 118.72760 * 269.72912 * 20 19 17 22 22 C 1.53186 * 109.82736 * 161.46305 * 21 20 19 23 23 O 1.43254 * 108.53700 * 49.51752 * 22 21 20 24 24 C 1.42965 * 112.98521 * 291.48543 * 23 22 21 25 25 C 1.33871 * 118.73053 * 89.99776 * 20 19 17 26 26 O 1.21283 * 118.83804 * 1.88478 * 25 20 19 27 27 C 1.47148 * 118.03926 * 50.51693 * 16 15 13 28 28 C 1.53300 * 108.38206 * 309.46540 * 27 16 15 29 29 O 1.42955 * 109.22459 * 52.30018 * 28 27 16 30 30 H 1.08995 * 109.46735 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46730 * 300.00314 * 1 2 3 32 32 H 1.09001 * 109.46827 * 59.99801 * 1 2 3 33 33 H 0.97009 * 120.00016 * 95.00316 * 4 2 1 34 34 H 0.97005 * 119.99724 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.68260 * 68.04945 * 15 13 2 36 36 H 1.08999 * 109.68056 * 307.53378 * 15 13 2 37 37 H 1.09009 * 109.46789 * 299.99756 * 19 17 16 38 38 H 1.08993 * 109.47186 * 59.99831 * 19 17 16 39 39 H 1.09001 * 109.39630 * 281.78134 * 21 20 19 40 40 H 1.09002 * 109.39270 * 41.50809 * 21 20 19 41 41 H 1.08996 * 109.79445 * 289.73011 * 22 21 20 42 42 H 1.09004 * 109.68020 * 169.23403 * 22 21 20 43 43 H 1.09001 * 109.41762 * 289.49433 * 24 23 22 44 44 H 1.08994 * 109.35754 * 169.66568 * 24 23 22 45 45 H 1.09002 * 109.68553 * 69.18322 * 27 16 15 46 46 H 1.09004 * 109.68438 * 189.74263 * 27 16 15 47 47 H 1.09005 * 109.51071 * 172.22485 * 28 27 16 48 48 H 1.08997 * 109.51211 * 292.32088 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1492 -0.0074 2.3757 6 1 1.8920 1.0405 2.4243 7 6 2.6114 -0.6618 3.5093 8 7 2.9244 -1.9389 3.4502 9 14 2.7892 0.2700 5.1185 10 1 2.3755 1.6824 4.9209 11 1 1.9280 -0.3586 6.1522 12 1 4.2059 0.2269 5.5615 13 6 2.0401 -0.7212 -1.2492 14 1 3.1262 -0.8022 -1.2059 15 6 1.6350 0.0697 -2.4984 16 7 1.9691 -0.7331 -3.6855 17 6 2.6760 -0.2044 -4.7041 18 8 3.0469 0.9490 -4.6504 19 6 3.0053 -1.0466 -5.9096 20 7 3.7746 -0.2485 -6.8674 21 6 3.0551 0.5060 -7.8907 22 6 3.9632 1.5969 -8.4668 23 8 5.2179 1.0041 -8.8224 24 6 5.9764 0.5794 -7.6874 25 6 5.1101 -0.2430 -6.7744 26 8 5.6400 -0.9254 -5.9232 27 6 1.5092 -2.1302 -3.7275 28 6 1.9211 -2.8144 -2.4189 29 8 1.4666 -2.0293 -1.3140 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.2491 -1.6317 1.1526 34 1 3.2470 -2.3963 4.2424 35 1 2.1798 1.0133 -2.5281 36 1 0.5629 0.2653 -2.4774 37 1 3.5949 -1.9096 -5.5998 38 1 2.0820 -1.3868 -6.3784 39 1 2.7449 -0.1698 -8.6877 40 1 2.1736 0.9686 -7.4466 41 1 4.1247 2.3748 -7.7206 42 1 3.4994 2.0306 -9.3528 43 1 6.3429 1.4534 -7.1489 44 1 6.8223 -0.0209 -8.0223 45 1 0.4243 -2.1567 -3.8298 46 1 1.9707 -2.6435 -4.5712 47 1 1.4721 -3.8065 -2.3698 48 1 3.0067 -2.9039 -2.3809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276777487.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:02 Heat of formation + Delta-G solvation = -119.437462 kcal Electronic energy + Delta-G solvation = -31071.326846 eV Core-core repulsion = 26741.926385 eV Total energy + Delta-G solvation = -4329.400461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.27007 -40.17151 -38.46706 -37.98291 -35.69815 -35.54989 -34.57969 -32.53424 -30.96278 -30.39259 -29.62055 -28.45595 -27.44088 -26.10441 -24.66858 -24.25136 -23.48006 -22.33425 -19.96348 -19.64268 -19.17741 -18.13266 -17.76172 -17.48846 -17.12568 -16.40502 -16.23691 -15.94518 -15.78907 -15.36768 -15.21263 -14.89508 -14.75947 -14.38031 -14.33990 -13.90183 -13.71575 -13.59254 -13.41671 -13.30353 -12.87478 -12.56073 -12.34316 -12.21012 -12.17826 -12.00965 -11.76799 -11.33825 -11.13781 -10.97967 -10.85183 -10.72953 -10.56739 -10.34658 -10.19561 -9.95233 -9.84206 -9.82751 -9.65195 -9.12532 -8.88703 -8.54273 -6.91966 -5.72138 -3.00969 2.03071 2.31679 2.39783 2.83770 3.26401 3.45858 3.51309 3.53646 3.87149 3.95013 4.18884 4.26252 4.53047 4.57943 4.58788 4.72024 4.74528 4.80147 4.87187 4.93380 5.00153 5.05644 5.12253 5.15144 5.23297 5.31059 5.38499 5.60283 5.65436 5.69351 5.71635 5.80383 5.97032 5.98283 6.18369 6.27375 6.33018 6.46233 6.64713 6.82002 6.87938 7.14122 7.17800 7.46394 7.64562 7.73443 7.94495 8.45989 9.57873 10.15360 10.51918 11.50366 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.002388 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.888564 B =11721.617609 C =12119.492380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.238 4.238 6 H 0.071 0.929 7 C -0.014 4.014 8 N -0.930 5.930 9 Si 0.906 3.094 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.076 3.924 14 H 0.064 0.936 15 C 0.084 3.916 16 N -0.611 5.611 17 C 0.501 3.499 18 O -0.534 6.534 19 C 0.091 3.909 20 N -0.589 5.589 21 C 0.083 3.917 22 C 0.044 3.956 23 O -0.371 6.371 24 C 0.053 3.947 25 C 0.493 3.507 26 O -0.535 6.535 27 C 0.071 3.929 28 C 0.045 3.955 29 O -0.357 6.357 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.034 0.966 33 H 0.389 0.611 34 H 0.254 0.746 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.117 0.883 43 H 0.094 0.906 44 H 0.132 0.868 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.105 0.895 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.532 1.869 -28.892 29.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.075 3.925 3 H 0.076 0.924 4 N -0.361 5.361 5 C -0.369 4.369 6 H 0.089 0.911 7 C -0.210 4.210 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C 0.016 3.984 14 H 0.082 0.918 15 C -0.039 4.039 16 N -0.346 5.346 17 C 0.288 3.712 18 O -0.410 6.410 19 C -0.035 4.035 20 N -0.322 5.322 21 C -0.040 4.040 22 C -0.033 4.033 23 O -0.289 6.289 24 C -0.027 4.027 25 C 0.281 3.719 26 O -0.411 6.411 27 C -0.052 4.052 28 C -0.033 4.033 29 O -0.275 6.275 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.223 0.777 34 H 0.064 0.936 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.136 0.864 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.135 0.865 43 H 0.112 0.888 44 H 0.150 0.850 45 H 0.099 0.901 46 H 0.106 0.894 47 H 0.123 0.877 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.078 2.190 -28.355 28.516 hybrid contribution 0.061 0.160 1.058 1.071 sum -2.018 2.350 -27.298 27.473 Atomic orbital electron populations 1.22414 0.98653 1.01612 0.99499 1.20186 0.92812 0.94579 0.84962 0.92369 1.42362 1.77845 1.10976 1.04886 1.19288 1.36474 0.93863 0.87310 0.91136 1.24746 1.02217 0.95979 0.98043 1.69695 1.50861 1.08636 1.28670 0.86129 0.77274 0.78782 0.84086 1.20571 1.21904 1.21925 1.22983 0.97679 0.83017 0.94673 0.91850 1.22490 1.01839 0.95831 0.83726 1.48196 1.54543 1.12929 1.18933 1.21037 0.77587 0.88259 0.84322 1.90685 1.52402 1.17942 1.79959 1.21401 0.98177 0.94951 0.88979 1.47059 1.05770 1.48369 1.31017 1.22223 0.96421 0.94728 0.90588 1.23048 0.84115 0.94286 1.01898 1.88181 1.31312 1.79497 1.29947 1.22834 0.94175 0.98766 0.86889 1.21033 0.82693 0.82709 0.85460 1.90778 1.72164 1.41785 1.36390 1.22545 1.00828 0.81635 1.00200 1.22903 0.99764 0.95192 0.85472 1.88101 1.67516 1.25878 1.46022 0.92413 0.92879 0.94742 0.77666 0.93616 0.88359 0.90063 0.86394 0.87290 0.90328 0.89464 0.91259 0.86513 0.88809 0.85016 0.90094 0.89373 0.87710 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.06 37.16 0.34 -2.64 16 2 C 0.19 3.77 2.77 -67.93 -0.19 3.58 16 3 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 4 N -0.72 -18.53 5.10 -53.43 -0.27 -18.80 16 5 C -0.24 -6.72 9.93 -15.06 -0.15 -6.87 16 6 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -28.69 13.06 55.49 0.72 -27.96 16 9 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 C 0.08 1.33 2.61 -26.58 -0.07 1.26 16 14 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 15 C 0.08 1.22 5.82 -3.53 -0.02 1.20 16 16 N -0.61 -7.67 3.02 -172.27 -0.52 -8.19 16 17 C 0.50 6.54 7.77 -10.98 -0.09 6.46 16 18 O -0.53 -8.84 15.90 5.56 0.09 -8.76 16 19 C 0.09 0.86 4.17 -5.19 -0.02 0.83 16 20 N -0.59 -5.75 2.32 -175.68 -0.41 -6.16 16 21 C 0.08 0.52 6.63 -4.17 -0.03 0.50 16 22 C 0.04 0.26 6.91 37.25 0.26 0.51 16 23 O -0.37 -2.94 10.85 -35.23 -0.38 -3.32 16 24 C 0.05 0.45 6.98 35.84 0.25 0.70 16 25 C 0.49 5.79 7.58 -11.56 -0.09 5.70 16 26 O -0.53 -8.35 16.36 5.55 0.09 -8.26 16 27 C 0.07 0.67 6.54 -3.53 -0.02 0.65 16 28 C 0.04 0.55 6.99 37.31 0.26 0.81 16 29 O -0.36 -6.04 9.25 -35.23 -0.33 -6.36 16 30 H 0.06 1.11 7.56 -51.93 -0.39 0.72 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.03 0.52 6.42 -51.93 -0.33 0.19 16 33 H 0.39 10.83 7.59 -40.82 -0.31 10.52 16 34 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.10 1.56 7.08 -51.93 -0.37 1.19 16 36 H 0.08 1.11 6.27 -51.93 -0.33 0.78 16 37 H 0.12 1.16 6.75 -51.92 -0.35 0.81 16 38 H 0.11 0.60 7.91 -51.93 -0.41 0.19 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.51 8.13 -51.93 -0.42 0.09 16 41 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 42 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.09 0.56 6.05 -51.93 -0.31 0.25 16 47 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 385.34 15.07 5.81 5.81 Total: -1.00 -37.63 385.34 -7.30 -44.93 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.42 Total: 7.15 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 0.34 Total: 12.18 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -0.48 Total: -61.11 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.53 Total: -26.70 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.63 -7.30 -44.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276777487.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.509 kcal (2) G-P(sol) polarization free energy of solvation -37.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds