Wall clock time and date at job start Sat Apr 11 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.46838 * 2 1 4 4 N 1.46490 * 109.47047 * 119.99742 * 2 1 3 5 5 C 1.36942 * 120.00431 * 274.99757 * 4 2 1 6 6 H 1.08003 * 119.99396 * 0.02562 * 5 4 2 7 7 C 1.38807 * 120.00532 * 179.97438 * 5 4 2 8 8 N 1.31625 * 119.99611 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00323 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46819 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47252 * 119.99883 * 9 7 5 12 12 H 1.48499 * 109.47035 * 240.00086 * 9 7 5 13 13 C 1.52997 * 109.47109 * 239.99931 * 2 1 3 14 14 H 1.09005 * 109.55438 * 185.12459 * 13 2 1 15 15 C 1.53300 * 109.51386 * 64.99947 * 13 2 1 16 16 N 1.47148 * 108.41473 * 187.79338 * 15 13 2 17 17 C 1.34786 * 120.98067 * 230.53573 * 16 15 13 18 18 O 1.21277 * 119.99865 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99669 * 180.02562 * 17 16 15 20 20 N 1.46500 * 109.46566 * 180.02562 * 19 17 16 21 21 C 1.46093 * 118.72760 * 269.72912 * 20 19 17 22 22 C 1.53186 * 109.82736 * 161.46305 * 21 20 19 23 23 O 1.43254 * 108.53700 * 49.51752 * 22 21 20 24 24 C 1.42965 * 112.98521 * 291.48543 * 23 22 21 25 25 C 1.33871 * 118.73053 * 89.99776 * 20 19 17 26 26 O 1.21283 * 118.83804 * 1.88478 * 25 20 19 27 27 C 1.47148 * 118.03926 * 50.51693 * 16 15 13 28 28 C 1.53300 * 108.38206 * 309.46540 * 27 16 15 29 29 O 1.42955 * 109.22459 * 52.30018 * 28 27 16 30 30 H 1.08995 * 109.46735 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46730 * 300.00314 * 1 2 3 32 32 H 1.09001 * 109.46827 * 59.99801 * 1 2 3 33 33 H 0.97009 * 120.00016 * 95.00316 * 4 2 1 34 34 H 0.97005 * 119.99724 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.68260 * 68.04945 * 15 13 2 36 36 H 1.08999 * 109.68056 * 307.53378 * 15 13 2 37 37 H 1.09009 * 109.46789 * 299.99756 * 19 17 16 38 38 H 1.08993 * 109.47186 * 59.99831 * 19 17 16 39 39 H 1.09001 * 109.39630 * 281.78134 * 21 20 19 40 40 H 1.09002 * 109.39270 * 41.50809 * 21 20 19 41 41 H 1.08996 * 109.79445 * 289.73011 * 22 21 20 42 42 H 1.09004 * 109.68020 * 169.23403 * 22 21 20 43 43 H 1.09001 * 109.41762 * 289.49433 * 24 23 22 44 44 H 1.08994 * 109.35754 * 169.66568 * 24 23 22 45 45 H 1.09002 * 109.68553 * 69.18322 * 27 16 15 46 46 H 1.09004 * 109.68438 * 189.74263 * 27 16 15 47 47 H 1.09005 * 109.51071 * 172.22485 * 28 27 16 48 48 H 1.08997 * 109.51211 * 292.32088 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1492 -0.0074 2.3757 6 1 1.8920 1.0405 2.4243 7 6 2.6114 -0.6618 3.5093 8 7 2.9244 -1.9389 3.4502 9 14 2.7892 0.2700 5.1185 10 1 2.3755 1.6824 4.9209 11 1 1.9280 -0.3586 6.1522 12 1 4.2059 0.2269 5.5615 13 6 2.0401 -0.7212 -1.2492 14 1 3.1262 -0.8022 -1.2059 15 6 1.6350 0.0697 -2.4984 16 7 1.9691 -0.7331 -3.6855 17 6 2.6760 -0.2044 -4.7041 18 8 3.0469 0.9490 -4.6504 19 6 3.0053 -1.0466 -5.9096 20 7 3.7746 -0.2485 -6.8674 21 6 3.0551 0.5060 -7.8907 22 6 3.9632 1.5969 -8.4668 23 8 5.2179 1.0041 -8.8224 24 6 5.9764 0.5794 -7.6874 25 6 5.1101 -0.2430 -6.7744 26 8 5.6400 -0.9254 -5.9232 27 6 1.5092 -2.1302 -3.7275 28 6 1.9211 -2.8144 -2.4189 29 8 1.4666 -2.0293 -1.3140 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.2491 -1.6317 1.1526 34 1 3.2470 -2.3963 4.2424 35 1 2.1798 1.0133 -2.5281 36 1 0.5629 0.2653 -2.4774 37 1 3.5949 -1.9096 -5.5998 38 1 2.0820 -1.3868 -6.3784 39 1 2.7449 -0.1698 -8.6877 40 1 2.1736 0.9686 -7.4466 41 1 4.1247 2.3748 -7.7206 42 1 3.4994 2.0306 -9.3528 43 1 6.3429 1.4534 -7.1489 44 1 6.8223 -0.0209 -8.0223 45 1 0.4243 -2.1567 -3.8298 46 1 1.9707 -2.6435 -4.5712 47 1 1.4721 -3.8065 -2.3698 48 1 3.0067 -2.9039 -2.3809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276777487.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:01 Heat of formation + Delta-G solvation = -149.214113 kcal Electronic energy + Delta-G solvation = -31072.618059 eV Core-core repulsion = 26741.926385 eV Total energy + Delta-G solvation = -4330.691674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.09679 -41.18935 -39.60846 -38.76283 -37.16001 -36.45160 -35.80048 -34.36751 -32.13139 -31.36976 -30.46268 -29.99012 -28.54084 -27.07739 -26.23411 -25.01215 -24.77940 -23.62929 -21.30263 -20.72878 -19.99251 -19.33523 -18.81798 -18.61935 -18.22887 -17.54176 -17.17378 -16.93337 -16.76696 -16.51171 -16.22342 -16.09633 -15.94853 -15.65373 -15.31363 -15.09902 -14.99785 -14.56045 -14.44923 -14.37133 -14.05926 -14.01519 -13.65313 -13.22388 -13.13342 -12.98919 -12.87495 -12.82448 -12.47473 -12.40619 -12.32589 -12.15641 -11.87740 -11.69961 -11.67051 -11.58703 -11.27905 -11.08519 -10.96797 -10.58963 -9.92104 -9.65045 -9.03196 -7.94434 -5.23478 1.17552 1.42081 1.45506 1.46712 1.56609 1.58432 1.94164 2.54741 2.72543 2.75009 3.23761 3.33185 3.39608 3.55906 3.74055 3.89121 3.92920 3.95576 3.99246 4.08756 4.10160 4.17391 4.24765 4.29605 4.35598 4.37908 4.43348 4.46800 4.57456 4.59471 4.69040 4.76197 4.79819 4.82447 4.94213 5.04416 5.07383 5.21003 5.26331 5.49365 5.60825 5.71216 6.15518 6.19672 6.21995 6.27621 6.81843 6.96124 7.33121 8.08453 8.33163 9.29380 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.002388 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.888564 B =11721.617609 C =12119.492380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.176 3.824 3 H 0.055 0.945 4 N -0.734 5.734 5 C -0.238 4.238 6 H 0.077 0.923 7 C -0.079 4.079 8 N -0.970 5.970 9 Si 0.973 3.027 10 H -0.265 1.265 11 H -0.292 1.292 12 H -0.295 1.295 13 C 0.090 3.910 14 H 0.029 0.971 15 C 0.095 3.905 16 N -0.613 5.613 17 C 0.496 3.504 18 O -0.577 6.577 19 C 0.093 3.907 20 N -0.589 5.589 21 C 0.078 3.922 22 C 0.039 3.961 23 O -0.375 6.375 24 C 0.057 3.943 25 C 0.482 3.518 26 O -0.586 6.586 27 C 0.075 3.925 28 C 0.034 3.966 29 O -0.380 6.380 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.159 0.841 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.057 0.943 42 H 0.150 0.850 43 H 0.097 0.903 44 H 0.145 0.855 45 H 0.107 0.893 46 H 0.126 0.874 47 H 0.133 0.867 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.402 2.220 -31.593 31.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.067 3.933 3 H 0.073 0.927 4 N -0.374 5.374 5 C -0.370 4.370 6 H 0.095 0.905 7 C -0.271 4.271 8 N -0.621 5.621 9 Si 0.803 3.197 10 H -0.189 1.189 11 H -0.219 1.219 12 H -0.223 1.223 13 C 0.031 3.969 14 H 0.047 0.953 15 C -0.028 4.028 16 N -0.347 5.347 17 C 0.285 3.715 18 O -0.456 6.456 19 C -0.033 4.033 20 N -0.321 5.321 21 C -0.043 4.043 22 C -0.038 4.038 23 O -0.293 6.293 24 C -0.022 4.022 25 C 0.271 3.729 26 O -0.467 6.467 27 C -0.046 4.046 28 C -0.043 4.043 29 O -0.299 6.299 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.206 0.794 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.132 0.868 38 H 0.176 0.824 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.075 0.925 42 H 0.167 0.833 43 H 0.115 0.885 44 H 0.163 0.837 45 H 0.125 0.875 46 H 0.144 0.856 47 H 0.151 0.849 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.010 2.572 -31.130 31.493 hybrid contribution 0.607 0.050 1.796 1.896 sum -3.403 2.622 -29.334 29.647 Atomic orbital electron populations 1.22194 0.96468 1.01318 1.00597 1.20427 0.94175 0.94277 0.84396 0.92724 1.42549 1.78350 1.10454 1.06038 1.19682 1.34858 0.94195 0.88261 0.90516 1.25586 1.03012 0.96935 1.01550 1.69857 1.52670 1.10283 1.29274 0.85067 0.76713 0.78217 0.79743 1.18921 1.21936 1.22261 1.22539 0.95470 0.84095 0.94811 0.95276 1.22181 1.02379 0.94824 0.83434 1.48300 1.54399 1.13994 1.17962 1.21769 0.76504 0.88113 0.85152 1.90665 1.53919 1.20054 1.80951 1.21572 1.00080 0.93792 0.87837 1.47280 1.05483 1.48095 1.31227 1.22515 0.96223 0.95162 0.90418 1.23273 0.83486 0.93898 1.03098 1.88183 1.32124 1.79518 1.29514 1.22814 0.94070 0.98586 0.86751 1.21649 0.83678 0.82332 0.85237 1.90745 1.73290 1.44059 1.38578 1.22760 1.02610 0.79623 0.99632 1.23235 0.99148 0.96227 0.85703 1.88049 1.67562 1.25683 1.48572 0.93318 0.94398 0.90918 0.79351 0.94126 0.90069 0.88295 0.86797 0.82386 0.87473 0.88663 0.92502 0.83270 0.88522 0.83750 0.87535 0.85630 0.84944 0.94384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 9.06 71.98 0.65 -4.61 16 2 C 0.18 7.27 2.77 44.99 0.12 7.39 16 3 H 0.05 2.28 8.08 -2.38 -0.02 2.26 16 4 N -0.73 -38.95 5.10 -322.95 -1.65 -40.60 16 5 C -0.24 -13.69 9.93 84.03 0.83 -12.85 16 6 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 7 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 8 N -0.97 -61.56 13.06 21.65 0.28 -61.28 16 9 Si 0.97 47.60 29.55 68.60 2.03 49.63 16 10 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 12 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 13 C 0.09 3.22 2.61 30.69 0.08 3.30 16 14 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 15 C 0.10 2.72 5.82 86.36 0.50 3.22 16 16 N -0.61 -14.30 3.02 -817.33 -2.47 -16.76 16 17 C 0.50 12.23 7.77 87.66 0.68 12.91 16 18 O -0.58 -19.02 15.90 -3.02 -0.05 -19.07 16 19 C 0.09 1.50 4.17 85.63 0.36 1.86 16 20 N -0.59 -10.36 2.32 -828.62 -1.92 -12.29 16 21 C 0.08 0.74 6.63 86.52 0.57 1.31 16 22 C 0.04 0.37 6.91 72.04 0.50 0.86 16 23 O -0.38 -5.23 10.85 -148.98 -1.62 -6.85 16 24 C 0.06 0.93 6.98 71.13 0.50 1.42 16 25 C 0.48 11.09 7.58 87.69 0.66 11.76 16 26 O -0.59 -18.72 16.36 -3.04 -0.05 -18.77 16 27 C 0.08 1.18 6.54 86.36 0.56 1.75 16 28 C 0.03 0.78 6.99 72.08 0.50 1.29 16 29 O -0.38 -12.77 9.25 -148.98 -1.38 -14.15 16 30 H 0.05 1.84 7.56 -2.39 -0.02 1.82 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 2.04 6.42 -2.39 -0.02 2.02 16 33 H 0.37 21.74 7.59 -92.70 -0.70 21.03 16 34 H 0.25 15.31 8.31 -92.70 -0.77 14.54 16 35 H 0.08 2.61 7.08 -2.39 -0.02 2.59 16 36 H 0.10 2.46 6.27 -2.39 -0.01 2.45 16 37 H 0.11 2.02 6.75 -2.38 -0.02 2.00 16 38 H 0.16 0.95 7.91 -2.39 -0.02 0.93 16 39 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.10 0.79 8.13 -2.39 -0.02 0.77 16 41 H 0.06 0.68 8.09 -2.39 -0.02 0.67 16 42 H 0.15 0.40 8.14 -2.38 -0.02 0.39 16 43 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.13 1.06 6.05 -2.38 -0.01 1.04 16 47 H 0.13 2.30 8.14 -2.38 -0.02 2.28 16 48 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -86.24 385.34 0.46 -85.79 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: 0.28 Total: 28.94 kcal Atomic # 6 Polarization: 18.41 SS G_CDS: 7.00 Total: 25.41 kcal Atomic # 7 Polarization: -125.18 SS G_CDS: -5.76 Total: -130.93 kcal Atomic # 8 Polarization: -55.74 SS G_CDS: -3.09 Total: -58.83 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -86.24 0.46 -85.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276777487.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.426 kcal (2) G-P(sol) polarization free energy of solvation -86.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds