Wall clock time and date at job start Sat Apr 11 2020 06:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46856 * 2 1 4 4 N 1.46500 * 109.47079 * 239.99550 * 2 1 3 5 5 C 1.36942 * 119.99847 * 85.00168 * 4 2 1 6 6 H 1.08002 * 119.99565 * 359.97438 * 5 4 2 7 7 C 1.38806 * 119.99946 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00234 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99951 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47170 * 60.00097 * 9 7 5 11 11 H 1.48499 * 109.47291 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47529 * 300.00206 * 9 7 5 13 13 C 1.52997 * 109.47206 * 119.99533 * 2 1 3 14 14 H 1.08999 * 109.51331 * 300.10310 * 13 2 1 15 15 C 1.53295 * 109.51645 * 180.02562 * 13 2 1 16 16 N 1.47154 * 108.38821 * 187.72525 * 15 13 2 17 17 C 1.34771 * 120.97922 * 230.51376 * 16 15 13 18 18 O 1.21286 * 120.00520 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99939 * 180.02562 * 17 16 15 20 20 N 1.46501 * 109.47404 * 180.02562 * 19 17 16 21 21 C 1.46091 * 118.72460 * 269.72984 * 20 19 17 22 22 C 1.53186 * 109.82670 * 161.46025 * 21 20 19 23 23 O 1.43251 * 108.54038 * 49.51615 * 22 21 20 24 24 C 1.42961 * 112.98221 * 291.48840 * 23 22 21 25 25 C 1.33871 * 118.73451 * 89.99620 * 20 19 17 26 26 O 1.21285 * 118.82922 * 1.88246 * 25 20 19 27 27 C 1.47150 * 118.03405 * 50.53763 * 16 15 13 28 28 C 1.53297 * 108.38316 * 309.46059 * 27 16 15 29 29 O 1.42962 * 109.55124 * 60.17876 * 13 2 1 30 30 H 1.09002 * 109.47153 * 60.00573 * 1 2 3 31 31 H 1.09008 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47038 * 299.99837 * 1 2 3 33 33 H 0.96991 * 119.99954 * 264.99701 * 4 2 1 34 34 H 0.96996 * 120.00460 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.67924 * 67.99423 * 15 13 2 36 36 H 1.09001 * 109.67682 * 307.45126 * 15 13 2 37 37 H 1.09003 * 109.47163 * 299.99525 * 19 17 16 38 38 H 1.09000 * 109.47257 * 59.99607 * 19 17 16 39 39 H 1.09001 * 109.40140 * 281.77666 * 21 20 19 40 40 H 1.09000 * 109.39625 * 41.50278 * 21 20 19 41 41 H 1.09004 * 109.79829 * 289.72831 * 22 21 20 42 42 H 1.09007 * 109.68420 * 169.23458 * 22 21 20 43 43 H 1.09000 * 109.41869 * 289.48736 * 24 23 22 44 44 H 1.09001 * 109.35955 * 169.66006 * 24 23 22 45 45 H 1.09000 * 109.67857 * 189.74588 * 27 16 15 46 46 H 1.08993 * 109.68732 * 69.18408 * 27 16 15 47 47 H 1.09002 * 109.51172 * 172.23104 * 28 27 16 48 48 H 1.08997 * 109.51619 * 292.33217 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0076 -2.3758 6 1 1.8919 1.0402 -2.4243 7 6 2.6123 -0.6619 -3.5089 8 7 2.9253 -1.9389 -3.4498 9 14 2.7901 0.2697 -5.1182 10 1 3.7445 1.3929 -4.9372 11 1 3.2991 -0.6487 -6.1683 12 1 1.4674 0.8055 -5.5288 13 6 2.0400 -0.7211 1.2493 14 1 1.6756 -0.2088 2.1397 15 6 3.5730 -0.7212 1.2506 16 7 4.0362 -1.5757 2.3555 17 6 4.9515 -1.1314 3.2393 18 8 5.4057 -0.0120 3.1311 19 6 5.4107 -2.0254 4.3621 20 7 6.3992 -1.3161 5.1781 21 6 7.8128 -1.4336 4.8284 22 6 8.6051 -0.2948 5.4779 23 8 8.2562 -0.2310 6.8658 24 6 6.9119 0.2038 7.0841 25 6 5.9728 -0.5898 6.2187 26 8 4.7869 -0.5709 6.4720 27 6 3.4709 -2.9297 2.4664 28 6 1.9429 -2.8221 2.4059 29 8 1.5679 -2.0705 1.2490 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6318 -1.1525 34 1 3.2494 -2.3961 -4.2416 35 1 3.9399 0.2952 1.3937 36 1 3.9408 -1.1147 0.3030 37 1 4.5565 -2.2978 4.9821 38 1 5.8610 -2.9273 3.9475 39 1 8.1946 -2.3917 5.1808 40 1 7.9236 -1.3775 3.7455 41 1 8.3569 0.6502 4.9947 42 1 9.6734 -0.4871 5.3779 43 1 6.8281 1.2615 6.8346 44 1 6.6503 0.0569 8.1320 45 1 3.7701 -3.3759 3.4148 46 1 3.8284 -3.5456 1.6412 47 1 1.5096 -3.8206 2.3476 48 1 1.5776 -2.3185 3.3009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276777489.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:06 Heat of formation + Delta-G solvation = -120.375965 kcal Electronic energy + Delta-G solvation = -31342.801324 eV Core-core repulsion = 27013.360166 eV Total energy + Delta-G solvation = -4329.441158 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.19256 -40.05140 -38.38686 -37.92751 -35.62630 -35.50383 -34.51895 -32.32294 -30.90381 -30.31241 -29.55857 -28.39402 -27.70758 -26.11941 -24.34141 -23.98520 -23.49454 -22.33713 -19.85668 -19.66326 -19.06878 -18.07192 -17.64768 -17.43232 -17.20319 -16.32843 -16.18406 -15.89809 -15.63295 -15.34757 -15.02283 -14.73059 -14.67597 -14.44441 -14.21407 -13.83546 -13.57246 -13.47670 -13.38261 -13.25552 -13.03321 -12.40418 -12.22101 -12.13728 -11.93771 -11.86071 -11.69035 -11.37353 -11.17404 -10.92920 -10.83025 -10.78144 -10.48253 -10.33531 -10.17712 -9.94561 -9.88130 -9.77629 -9.56916 -9.03183 -8.91615 -8.39706 -6.92459 -5.73851 -3.02153 2.09312 2.38316 2.54491 2.98978 3.32116 3.45368 3.49966 3.50557 3.92812 3.97539 4.29984 4.35339 4.59678 4.60852 4.68153 4.79565 4.81191 4.90697 4.95391 5.00693 5.08003 5.11725 5.18231 5.29225 5.32091 5.39759 5.47653 5.60935 5.70378 5.73558 5.80238 5.86024 6.01379 6.22060 6.31791 6.34443 6.42010 6.54293 6.67841 6.79319 6.94367 7.14480 7.34342 7.47596 7.68880 7.72046 8.09942 8.44630 9.56808 10.13787 10.51431 11.48405 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.002726 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.692590 B =10270.808507 C =11075.229264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.183 3.817 3 H 0.059 0.941 4 N -0.717 5.717 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C 0.078 3.922 14 H 0.054 0.946 15 C 0.087 3.913 16 N -0.610 5.610 17 C 0.500 3.500 18 O -0.536 6.536 19 C 0.091 3.909 20 N -0.587 5.587 21 C 0.082 3.918 22 C 0.044 3.956 23 O -0.372 6.372 24 C 0.053 3.947 25 C 0.494 3.506 26 O -0.539 6.539 27 C 0.070 3.930 28 C 0.047 3.953 29 O -0.358 6.358 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.032 0.968 33 H 0.390 0.610 34 H 0.254 0.746 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.131 0.869 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.104 0.896 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.023 -2.922 21.220 23.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.072 3.928 3 H 0.077 0.923 4 N -0.359 5.359 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.213 1.213 13 C 0.019 3.981 14 H 0.072 0.928 15 C -0.035 4.035 16 N -0.344 5.344 17 C 0.287 3.713 18 O -0.412 6.412 19 C -0.035 4.035 20 N -0.320 5.320 21 C -0.041 4.041 22 C -0.033 4.033 23 O -0.290 6.290 24 C -0.027 4.027 25 C 0.282 3.718 26 O -0.416 6.416 27 C -0.053 4.053 28 C -0.031 4.031 29 O -0.275 6.275 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.225 0.775 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.135 0.865 43 H 0.111 0.889 44 H 0.149 0.851 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.122 0.878 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.721 -2.309 21.165 23.007 hybrid contribution 0.096 0.170 -1.116 1.133 sum 8.818 -2.139 20.049 22.006 Atomic orbital electron populations 1.22350 0.98486 1.01578 0.99647 1.20253 0.92782 0.94610 0.85158 0.92296 1.42373 1.77691 1.10993 1.04882 1.19204 1.36517 0.93807 0.87461 0.91293 1.24706 1.02254 0.95925 0.97914 1.69658 1.50809 1.08599 1.28879 0.86301 0.77751 0.78599 0.83723 1.21332 1.21789 1.21345 1.22914 0.92217 0.83378 0.99610 0.92769 1.22437 0.94999 0.96486 0.89558 1.48231 1.41546 1.15591 1.29061 1.20970 0.79323 0.88213 0.82843 1.90683 1.56287 1.20244 1.74017 1.21412 0.94958 0.94678 0.92489 1.47055 1.07104 1.49422 1.28415 1.22239 0.79664 1.00351 1.01830 1.23057 1.00529 0.98047 0.81694 1.88176 1.27999 1.88138 1.24660 1.22818 0.80435 0.98423 1.00987 1.21007 0.90137 0.79557 0.81108 1.90749 1.17096 1.62734 1.71063 1.22517 0.95864 0.83870 1.03072 1.22881 0.92783 0.97691 0.89735 1.88110 1.75166 1.23572 1.40701 0.92739 0.92529 0.94850 0.77531 0.93570 0.88745 0.88398 0.86559 0.87275 0.90287 0.89271 0.91228 0.86469 0.88887 0.85112 0.89567 0.89680 0.87805 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.35 37.16 0.35 -2.68 16 2 C 0.18 3.68 2.73 -67.93 -0.19 3.49 16 3 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 4 N -0.72 -17.71 4.29 -53.43 -0.23 -17.94 16 5 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16 9 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 C 0.08 1.36 2.52 -26.58 -0.07 1.29 16 14 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 15 C 0.09 1.53 5.86 -3.53 -0.02 1.51 16 16 N -0.61 -8.83 3.02 -172.28 -0.52 -9.35 16 17 C 0.50 7.29 7.77 -10.99 -0.09 7.21 16 18 O -0.54 -9.73 15.90 5.55 0.09 -9.64 16 19 C 0.09 0.96 4.17 -5.19 -0.02 0.94 16 20 N -0.59 -6.27 2.32 -175.68 -0.41 -6.68 16 21 C 0.08 0.62 6.63 -4.17 -0.03 0.59 16 22 C 0.04 0.30 6.91 37.25 0.26 0.56 16 23 O -0.37 -3.16 10.85 -35.23 -0.38 -3.54 16 24 C 0.05 0.46 6.98 35.83 0.25 0.71 16 25 C 0.49 5.99 7.58 -11.56 -0.09 5.90 16 26 O -0.54 -8.39 16.36 5.55 0.09 -8.30 16 27 C 0.07 0.78 6.54 -3.53 -0.02 0.76 16 28 C 0.05 0.58 6.98 37.31 0.26 0.84 16 29 O -0.36 -6.09 9.23 -35.23 -0.33 -6.41 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.11 7.69 -51.92 -0.40 0.71 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.39 10.35 7.21 -40.82 -0.29 10.06 16 34 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.09 1.77 7.08 -51.93 -0.37 1.40 16 36 H 0.10 2.00 7.28 -51.93 -0.38 1.62 16 37 H 0.12 1.22 6.75 -51.93 -0.35 0.86 16 38 H 0.11 0.78 7.91 -51.93 -0.41 0.37 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.68 8.13 -51.93 -0.42 0.26 16 41 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 42 H 0.12 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 0.65 6.05 -51.93 -0.31 0.34 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 387.19 15.07 5.83 5.83 Total: -1.00 -36.05 387.19 -7.35 -43.39 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -7.55 Total: 8.39 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 0.35 Total: 13.99 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -0.43 Total: -61.06 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.53 Total: -27.89 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.05 -7.35 -43.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276777489.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.982 kcal (2) G-P(sol) polarization free energy of solvation -36.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds