Wall clock time and date at job start Sat Apr 11 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46856 * 2 1 4 4 N 1.46500 * 109.47079 * 239.99550 * 2 1 3 5 5 C 1.36942 * 119.99847 * 85.00168 * 4 2 1 6 6 H 1.08002 * 119.99565 * 359.97438 * 5 4 2 7 7 C 1.38806 * 119.99946 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00234 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99951 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47170 * 60.00097 * 9 7 5 11 11 H 1.48499 * 109.47291 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47529 * 300.00206 * 9 7 5 13 13 C 1.52997 * 109.47206 * 119.99533 * 2 1 3 14 14 H 1.08999 * 109.51331 * 300.10310 * 13 2 1 15 15 C 1.53295 * 109.51645 * 180.02562 * 13 2 1 16 16 N 1.47154 * 108.38821 * 187.72525 * 15 13 2 17 17 C 1.34771 * 120.97922 * 230.51376 * 16 15 13 18 18 O 1.21286 * 120.00520 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99939 * 180.02562 * 17 16 15 20 20 N 1.46501 * 109.47404 * 180.02562 * 19 17 16 21 21 C 1.46091 * 118.72460 * 269.72984 * 20 19 17 22 22 C 1.53186 * 109.82670 * 161.46025 * 21 20 19 23 23 O 1.43251 * 108.54038 * 49.51615 * 22 21 20 24 24 C 1.42961 * 112.98221 * 291.48840 * 23 22 21 25 25 C 1.33871 * 118.73451 * 89.99620 * 20 19 17 26 26 O 1.21285 * 118.82922 * 1.88246 * 25 20 19 27 27 C 1.47150 * 118.03405 * 50.53763 * 16 15 13 28 28 C 1.53297 * 108.38316 * 309.46059 * 27 16 15 29 29 O 1.42962 * 109.55124 * 60.17876 * 13 2 1 30 30 H 1.09002 * 109.47153 * 60.00573 * 1 2 3 31 31 H 1.09008 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47038 * 299.99837 * 1 2 3 33 33 H 0.96991 * 119.99954 * 264.99701 * 4 2 1 34 34 H 0.96996 * 120.00460 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.67924 * 67.99423 * 15 13 2 36 36 H 1.09001 * 109.67682 * 307.45126 * 15 13 2 37 37 H 1.09003 * 109.47163 * 299.99525 * 19 17 16 38 38 H 1.09000 * 109.47257 * 59.99607 * 19 17 16 39 39 H 1.09001 * 109.40140 * 281.77666 * 21 20 19 40 40 H 1.09000 * 109.39625 * 41.50278 * 21 20 19 41 41 H 1.09004 * 109.79829 * 289.72831 * 22 21 20 42 42 H 1.09007 * 109.68420 * 169.23458 * 22 21 20 43 43 H 1.09000 * 109.41869 * 289.48736 * 24 23 22 44 44 H 1.09001 * 109.35955 * 169.66006 * 24 23 22 45 45 H 1.09000 * 109.67857 * 189.74588 * 27 16 15 46 46 H 1.08993 * 109.68732 * 69.18408 * 27 16 15 47 47 H 1.09002 * 109.51172 * 172.23104 * 28 27 16 48 48 H 1.08997 * 109.51619 * 292.33217 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0076 -2.3758 6 1 1.8919 1.0402 -2.4243 7 6 2.6123 -0.6619 -3.5089 8 7 2.9253 -1.9389 -3.4498 9 14 2.7901 0.2697 -5.1182 10 1 3.7445 1.3929 -4.9372 11 1 3.2991 -0.6487 -6.1683 12 1 1.4674 0.8055 -5.5288 13 6 2.0400 -0.7211 1.2493 14 1 1.6756 -0.2088 2.1397 15 6 3.5730 -0.7212 1.2506 16 7 4.0362 -1.5757 2.3555 17 6 4.9515 -1.1314 3.2393 18 8 5.4057 -0.0120 3.1311 19 6 5.4107 -2.0254 4.3621 20 7 6.3992 -1.3161 5.1781 21 6 7.8128 -1.4336 4.8284 22 6 8.6051 -0.2948 5.4779 23 8 8.2562 -0.2310 6.8658 24 6 6.9119 0.2038 7.0841 25 6 5.9728 -0.5898 6.2187 26 8 4.7869 -0.5709 6.4720 27 6 3.4709 -2.9297 2.4664 28 6 1.9429 -2.8221 2.4059 29 8 1.5679 -2.0705 1.2490 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6318 -1.1525 34 1 3.2494 -2.3961 -4.2416 35 1 3.9399 0.2952 1.3937 36 1 3.9408 -1.1147 0.3030 37 1 4.5565 -2.2978 4.9821 38 1 5.8610 -2.9273 3.9475 39 1 8.1946 -2.3917 5.1808 40 1 7.9236 -1.3775 3.7455 41 1 8.3569 0.6502 4.9947 42 1 9.6734 -0.4871 5.3779 43 1 6.8281 1.2615 6.8346 44 1 6.6503 0.0569 8.1320 45 1 3.7701 -3.3759 3.4148 46 1 3.8284 -3.5456 1.6412 47 1 1.5096 -3.8206 2.3476 48 1 1.5776 -2.3185 3.3009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276777489.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:05 Heat of formation + Delta-G solvation = -147.916277 kcal Electronic energy + Delta-G solvation = -31343.995561 eV Core-core repulsion = 27013.360166 eV Total energy + Delta-G solvation = -4330.635395 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.08737 -41.15925 -39.58725 -38.75260 -37.12638 -36.44744 -35.81992 -34.19244 -31.98792 -31.34586 -30.51858 -30.11354 -28.78846 -27.05458 -25.83291 -25.05437 -24.79608 -23.57748 -21.33141 -20.71156 -19.99820 -19.34630 -18.81304 -18.63353 -18.22645 -17.58106 -17.14291 -16.88122 -16.67504 -16.47470 -16.20010 -16.03794 -15.95087 -15.60733 -15.21782 -15.12732 -14.92191 -14.64814 -14.43778 -14.37875 -14.08535 -14.00486 -13.51829 -13.14732 -13.12851 -12.99197 -12.81795 -12.74617 -12.54168 -12.51610 -12.33686 -12.23374 -11.84091 -11.71517 -11.67861 -11.54783 -11.20492 -11.06540 -10.94678 -10.58818 -9.92331 -9.64914 -8.96262 -7.90339 -5.17777 1.19036 1.42934 1.47522 1.49840 1.55545 1.58996 1.94828 2.57253 2.72423 2.77104 3.23356 3.34591 3.42946 3.66968 3.73087 3.90322 3.93702 3.96341 3.99095 4.07925 4.12890 4.17419 4.22999 4.27789 4.31951 4.37068 4.45493 4.47714 4.59215 4.67422 4.74185 4.77523 4.79539 4.83441 4.98758 5.02687 5.06522 5.17568 5.27140 5.52468 5.57123 5.70787 6.16010 6.22656 6.25137 6.32004 6.81634 6.97055 7.38524 8.13321 8.40240 9.32597 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.002726 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.692590 B =10270.808507 C =11075.229264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.174 3.826 3 H 0.056 0.944 4 N -0.724 5.724 5 C -0.238 4.238 6 H 0.073 0.927 7 C -0.072 4.072 8 N -0.966 5.966 9 Si 0.968 3.032 10 H -0.281 1.281 11 H -0.296 1.296 12 H -0.280 1.280 13 C 0.093 3.907 14 H 0.068 0.932 15 C 0.098 3.902 16 N -0.610 5.610 17 C 0.494 3.506 18 O -0.579 6.579 19 C 0.095 3.905 20 N -0.589 5.589 21 C 0.077 3.923 22 C 0.041 3.959 23 O -0.374 6.374 24 C 0.057 3.943 25 C 0.484 3.516 26 O -0.582 6.582 27 C 0.069 3.931 28 C 0.039 3.961 29 O -0.382 6.382 30 H 0.039 0.961 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.378 0.622 34 H 0.249 0.751 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.123 0.877 38 H 0.150 0.850 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.148 0.852 43 H 0.098 0.902 44 H 0.148 0.852 45 H 0.131 0.869 46 H 0.083 0.917 47 H 0.132 0.868 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.678 -3.707 22.876 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.065 3.935 3 H 0.073 0.927 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.091 0.909 7 C -0.265 4.265 8 N -0.616 5.616 9 Si 0.797 3.203 10 H -0.207 1.207 11 H -0.222 1.222 12 H -0.207 1.207 13 C 0.034 3.966 14 H 0.086 0.914 15 C -0.026 4.026 16 N -0.344 5.344 17 C 0.283 3.717 18 O -0.459 6.459 19 C -0.031 4.031 20 N -0.321 5.321 21 C -0.045 4.045 22 C -0.035 4.035 23 O -0.293 6.293 24 C -0.023 4.023 25 C 0.273 3.727 26 O -0.463 6.463 27 C -0.053 4.053 28 C -0.038 4.038 29 O -0.301 6.301 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.211 0.789 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.140 0.860 38 H 0.168 0.832 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.166 0.834 43 H 0.116 0.884 44 H 0.166 0.834 45 H 0.149 0.851 46 H 0.101 0.899 47 H 0.150 0.850 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.381 -3.096 22.851 24.895 hybrid contribution -0.098 0.413 -1.559 1.616 sum 9.284 -2.682 21.292 23.383 Atomic orbital electron populations 1.22176 0.97039 1.01188 1.00452 1.20463 0.93666 0.94472 0.84905 0.92654 1.42450 1.78020 1.10492 1.05596 1.19570 1.34911 0.94083 0.88459 0.90918 1.25453 1.03115 0.96831 1.01077 1.69811 1.52519 1.10023 1.29278 0.85299 0.77817 0.77336 0.79824 1.20686 1.22247 1.20663 1.22572 0.91661 0.84099 0.98306 0.91440 1.21998 0.95282 0.95882 0.89390 1.48310 1.41615 1.16468 1.28018 1.21812 0.78427 0.88193 0.83277 1.90659 1.57716 1.22345 1.75196 1.21543 0.95747 0.94809 0.90979 1.47279 1.08394 1.48723 1.27709 1.22494 0.78047 1.01986 1.01964 1.23231 1.02186 0.97326 0.80787 1.88179 1.27461 1.88076 1.25536 1.22848 0.80077 0.98026 1.01309 1.21635 0.90085 0.79402 0.81576 1.90716 1.18861 1.64297 1.72423 1.22766 0.95053 0.82084 1.05397 1.23229 0.93668 0.98462 0.88414 1.88065 1.75531 1.23250 1.43231 0.94186 0.93436 0.91710 0.78859 0.94183 0.90690 0.91855 0.85968 0.83211 0.87484 0.89408 0.92527 0.83407 0.88410 0.83430 0.85145 0.89877 0.85035 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.53 9.35 71.98 0.67 -4.86 16 2 C 0.17 7.09 2.73 44.99 0.12 7.21 16 3 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 4 N -0.72 -36.66 4.29 -322.94 -1.39 -38.05 16 5 C -0.24 -13.28 9.93 84.03 0.83 -12.45 16 6 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 7 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 8 N -0.97 -59.03 13.06 21.65 0.28 -58.75 16 9 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 11 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 C 0.09 3.24 2.52 30.69 0.08 3.31 16 14 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 15 C 0.10 3.54 5.86 86.35 0.51 4.05 16 16 N -0.61 -17.26 3.02 -817.36 -2.47 -19.73 16 17 C 0.49 14.03 7.77 87.66 0.68 14.71 16 18 O -0.58 -21.35 15.90 -3.05 -0.05 -21.40 16 19 C 0.10 1.78 4.17 85.63 0.36 2.13 16 20 N -0.59 -11.51 2.32 -828.64 -1.92 -13.43 16 21 C 0.08 0.97 6.63 86.52 0.57 1.55 16 22 C 0.04 0.48 6.91 72.04 0.50 0.98 16 23 O -0.37 -5.59 10.85 -148.98 -1.62 -7.21 16 24 C 0.06 0.92 6.98 71.12 0.50 1.42 16 25 C 0.48 11.22 7.58 87.69 0.66 11.88 16 26 O -0.58 -17.83 16.36 -3.04 -0.05 -17.88 16 27 C 0.07 1.38 6.54 86.35 0.56 1.94 16 28 C 0.04 0.87 6.98 72.08 0.50 1.37 16 29 O -0.38 -12.73 9.23 -148.98 -1.38 -14.10 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.84 7.69 -2.38 -0.02 1.82 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.38 20.75 7.21 -92.71 -0.67 20.08 16 34 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 35 H 0.07 2.96 7.08 -2.39 -0.02 2.94 16 36 H 0.06 2.73 7.28 -2.39 -0.02 2.71 16 37 H 0.12 2.21 6.75 -2.39 -0.02 2.20 16 38 H 0.15 1.54 7.91 -2.39 -0.02 1.53 16 39 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.09 1.17 8.13 -2.39 -0.02 1.15 16 41 H 0.06 0.82 8.10 -2.38 -0.02 0.80 16 42 H 0.15 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.15 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.13 1.46 6.05 -2.39 -0.01 1.44 16 46 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -81.02 387.19 0.77 -80.26 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 0.30 Total: 32.10 kcal Atomic # 6 Polarization: 22.54 SS G_CDS: 7.02 Total: 29.56 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -5.49 Total: -129.96 kcal Atomic # 8 Polarization: -57.51 SS G_CDS: -3.09 Total: -60.60 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -81.02 0.77 -80.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276777489.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.660 kcal (2) G-P(sol) polarization free energy of solvation -81.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds