Wall clock time and date at job start Sat Apr 11 2020 06:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 5 5 C 1.36935 * 119.99926 * 274.99989 * 4 2 1 6 6 H 1.08005 * 119.99877 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00369 * 179.73019 * 5 4 2 8 8 N 1.31614 * 120.00468 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99699 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47209 * 90.00536 * 9 7 5 11 11 H 1.48506 * 109.47294 * 210.00384 * 9 7 5 12 12 H 1.48501 * 109.47275 * 330.00287 * 9 7 5 13 13 C 1.52997 * 109.47053 * 239.99634 * 2 1 3 14 14 H 1.09007 * 109.51230 * 65.00578 * 13 2 1 15 15 C 1.53298 * 109.51212 * 185.10152 * 13 2 1 16 16 N 1.47154 * 108.38511 * 172.23091 * 15 13 2 17 17 C 1.34774 * 120.98550 * 129.48871 * 16 15 13 18 18 O 1.21284 * 119.99581 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00335 * 179.97438 * 17 16 15 20 20 N 1.46496 * 109.47222 * 179.97438 * 19 17 16 21 21 C 1.46097 * 118.72970 * 269.73740 * 20 19 17 22 22 C 1.53184 * 109.82931 * 161.46202 * 21 20 19 23 23 O 1.43246 * 108.53919 * 49.51040 * 22 21 20 24 24 C 1.42961 * 112.98914 * 291.48803 * 23 22 21 25 25 C 1.33869 * 118.73003 * 89.99923 * 20 19 17 26 26 O 1.21276 * 118.83416 * 1.88274 * 25 20 19 27 27 C 1.47152 * 118.03145 * 309.46496 * 16 15 13 28 28 C 1.53287 * 108.38759 * 50.54042 * 27 16 15 29 29 O 1.42955 * 109.51698 * 304.90154 * 13 2 1 30 30 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 32 32 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 33 33 H 0.97005 * 120.00261 * 95.00113 * 4 2 1 34 34 H 0.97000 * 120.00663 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.68095 * 291.95114 * 15 13 2 36 36 H 1.08996 * 109.67800 * 52.46661 * 15 13 2 37 37 H 1.09000 * 109.46788 * 299.99836 * 19 17 16 38 38 H 1.08999 * 109.46806 * 59.99845 * 19 17 16 39 39 H 1.09003 * 109.39308 * 281.77729 * 21 20 19 40 40 H 1.08999 * 109.39724 * 41.49988 * 21 20 19 41 41 H 1.08997 * 109.79448 * 289.72372 * 22 21 20 42 42 H 1.09002 * 109.68170 * 169.23131 * 22 21 20 43 43 H 1.09004 * 109.41495 * 289.49578 * 24 23 22 44 44 H 1.08996 * 109.36205 * 169.66615 * 24 23 22 45 45 H 1.09007 * 109.67538 * 170.26116 * 27 16 15 46 46 H 1.09000 * 109.68363 * 290.80871 * 27 16 15 47 47 H 1.08996 * 109.51665 * 67.61692 * 28 27 16 48 48 H 1.09007 * 109.51369 * 187.72318 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1490 -0.0076 2.3757 6 1 1.8925 1.0405 2.4241 7 6 2.6063 -0.6632 3.5106 8 7 2.7315 -0.0068 4.6444 9 14 3.0427 -2.4777 3.4287 10 1 4.4756 -2.6265 3.0682 11 1 2.7974 -3.1061 4.7517 12 1 2.2021 -3.1432 2.4012 13 6 2.0400 -0.7213 -1.2492 14 1 1.7520 -0.1589 -2.1374 15 6 3.5675 -0.8341 -1.1875 16 7 4.0149 -1.6899 -2.2979 17 6 4.9973 -1.2903 -3.1296 18 8 5.5263 -0.2108 -2.9687 19 6 5.4386 -2.1847 -4.2593 20 7 6.5102 -1.5281 -5.0121 21 6 6.1532 -0.6773 -6.1448 22 6 7.3236 0.2494 -6.4878 23 8 8.5155 -0.5391 -6.5851 24 6 8.9384 -1.0695 -5.3267 25 6 7.7790 -1.7351 -4.6387 26 8 8.0011 -2.4858 -3.7125 27 6 3.3583 -2.9951 -2.4731 28 6 1.8410 -2.7770 -2.4722 29 8 1.4723 -2.0320 -1.3091 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 2.2490 -1.6319 1.1526 34 1 3.0507 -0.4651 5.4375 35 1 4.0130 0.1560 -1.2847 36 1 3.8647 -1.2787 -0.2378 37 1 5.8042 -3.1283 -3.8541 38 1 4.5945 -2.3765 -4.9218 39 1 5.9169 -1.3019 -7.0063 40 1 5.2817 -0.0761 -5.8855 41 1 7.4434 0.9981 -5.7048 42 1 7.1335 0.7439 -7.4405 43 1 9.3152 -0.2605 -4.7008 44 1 9.7306 -1.8001 -5.4903 45 1 3.6653 -3.4360 -3.4215 46 1 3.6345 -3.6580 -1.6531 47 1 1.5523 -2.2229 -3.3652 48 1 1.3345 -3.7422 -2.4629 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276777491.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:09 Heat of formation + Delta-G solvation = -115.435973 kcal Electronic energy + Delta-G solvation = -31473.914907 eV Core-core repulsion = 27144.687963 eV Total energy + Delta-G solvation = -4329.226944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.25142 -40.18801 -38.52988 -37.97475 -35.73851 -35.66608 -34.69032 -32.33728 -30.99892 -30.51339 -29.68023 -28.93954 -27.83163 -26.21230 -24.39772 -24.01916 -23.37130 -22.39681 -19.98093 -19.75388 -19.15367 -18.11434 -17.91528 -17.59194 -17.39888 -16.43541 -16.32850 -15.94936 -15.78163 -15.53927 -15.02148 -14.84895 -14.69979 -14.53655 -14.33934 -13.90561 -13.76948 -13.59064 -13.51542 -13.32386 -12.91710 -12.47094 -12.31853 -12.26874 -12.16837 -12.00082 -11.75802 -11.66322 -11.36170 -10.97005 -10.95431 -10.86501 -10.62790 -10.40372 -10.16931 -10.03010 -10.00075 -9.81995 -9.55664 -9.10212 -8.95079 -8.54870 -7.24876 -5.75045 -3.10344 2.04950 2.33600 2.44787 2.87175 3.27963 3.40943 3.45374 3.48261 3.78311 3.88894 4.20955 4.27563 4.54612 4.57686 4.62046 4.62574 4.74819 4.79399 4.88941 4.93113 4.94687 5.01306 5.12239 5.14298 5.17941 5.24403 5.28915 5.51312 5.53144 5.57993 5.64289 5.71203 5.83853 6.10369 6.18570 6.27071 6.29461 6.37854 6.46480 6.70211 6.89525 7.04082 7.21509 7.27649 7.65973 7.99732 8.00919 8.44032 9.22891 9.95111 10.15548 11.43227 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015179 B = 0.002965 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.260587 B = 9440.614716 C =10058.951370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.188 3.812 3 H 0.069 0.931 4 N -0.743 5.743 5 C -0.243 4.243 6 H 0.091 0.909 7 C 0.007 3.993 8 N -0.933 5.933 9 Si 0.878 3.122 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.273 1.273 13 C 0.075 3.925 14 H 0.060 0.940 15 C 0.086 3.914 16 N -0.612 5.612 17 C 0.500 3.500 18 O -0.531 6.531 19 C 0.092 3.908 20 N -0.589 5.589 21 C 0.083 3.917 22 C 0.043 3.957 23 O -0.371 6.371 24 C 0.053 3.947 25 C 0.493 3.507 26 O -0.536 6.536 27 C 0.068 3.932 28 C 0.048 3.952 29 O -0.363 6.363 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.366 0.634 34 H 0.259 0.741 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.117 0.883 43 H 0.094 0.906 44 H 0.132 0.868 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.052 0.948 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.254 -4.500 -28.283 28.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.078 3.922 3 H 0.087 0.913 4 N -0.387 5.387 5 C -0.373 4.373 6 H 0.109 0.891 7 C -0.189 4.189 8 N -0.581 5.581 9 Si 0.708 3.292 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.199 1.199 13 C 0.016 3.984 14 H 0.078 0.922 15 C -0.036 4.036 16 N -0.347 5.347 17 C 0.287 3.713 18 O -0.407 6.407 19 C -0.035 4.035 20 N -0.322 5.322 21 C -0.040 4.040 22 C -0.034 4.034 23 O -0.289 6.289 24 C -0.027 4.027 25 C 0.281 3.719 26 O -0.412 6.412 27 C -0.055 4.055 28 C -0.030 4.030 29 O -0.281 6.281 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.199 0.801 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.135 0.865 43 H 0.112 0.888 44 H 0.150 0.850 45 H 0.107 0.893 46 H 0.100 0.900 47 H 0.070 0.930 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.685 -4.220 -27.571 28.283 hybrid contribution 0.147 -1.249 0.212 1.275 sum 4.832 -5.469 -27.360 28.316 Atomic orbital electron populations 1.22297 0.97916 1.01638 1.00121 1.20232 0.93038 0.94857 0.84040 0.91332 1.42767 1.79417 1.09603 1.06874 1.19063 1.37093 0.95429 0.85704 0.89147 1.24633 1.01406 0.97336 0.95505 1.69691 1.52689 1.35552 1.00182 0.86631 0.78491 0.87093 0.76953 1.21161 1.21772 1.19910 1.22979 0.91443 0.84086 0.99871 0.92216 1.22430 0.94971 0.96921 0.89288 1.48241 1.36714 1.19052 1.30739 1.21012 0.79322 0.87626 0.83377 1.90697 1.54486 1.22842 1.72722 1.21397 0.91559 0.97093 0.93438 1.47059 1.05450 1.48595 1.31093 1.22224 0.99645 0.93769 0.88326 1.23049 0.83510 0.92776 1.04019 1.88176 1.43319 1.68549 1.28891 1.22831 0.94804 0.99363 0.85657 1.21032 0.84630 0.81996 0.84211 1.90769 1.84307 1.36789 1.29368 1.22526 0.94505 0.85326 1.03136 1.22899 0.93049 0.97582 0.89495 1.88094 1.70771 1.27376 1.41836 0.92568 0.92300 0.94555 0.80059 0.93077 0.88145 0.89130 0.86457 0.87406 0.90352 0.89445 0.91211 0.86493 0.88790 0.85045 0.89333 0.89960 0.93009 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.30 37.16 0.35 -2.46 16 2 C 0.19 3.55 2.80 -67.93 -0.19 3.36 16 3 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 4 N -0.74 -17.35 4.05 -53.43 -0.22 -17.57 16 5 C -0.24 -6.79 10.41 -15.06 -0.16 -6.95 16 6 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 7 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 8 N -0.93 -29.54 13.97 55.49 0.78 -28.77 16 9 Si 0.88 22.50 27.73 -169.99 -4.71 17.79 16 10 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 12 H -0.27 -6.65 6.52 56.52 0.37 -6.28 16 13 C 0.08 1.18 2.57 -26.58 -0.07 1.11 16 14 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 15 C 0.09 1.42 5.82 -3.53 -0.02 1.40 16 16 N -0.61 -8.31 3.02 -172.27 -0.52 -8.83 16 17 C 0.50 6.94 7.77 -10.99 -0.09 6.86 16 18 O -0.53 -9.35 15.90 5.55 0.09 -9.26 16 19 C 0.09 0.90 4.17 -5.20 -0.02 0.88 16 20 N -0.59 -6.02 2.32 -175.68 -0.41 -6.42 16 21 C 0.08 0.56 6.63 -4.16 -0.03 0.53 16 22 C 0.04 0.27 6.91 37.25 0.26 0.53 16 23 O -0.37 -3.05 10.85 -35.23 -0.38 -3.44 16 24 C 0.05 0.46 6.98 35.84 0.25 0.71 16 25 C 0.49 5.99 7.58 -11.56 -0.09 5.90 16 26 O -0.54 -8.57 16.36 5.56 0.09 -8.48 16 27 C 0.07 0.69 6.54 -3.54 -0.02 0.66 16 28 C 0.05 0.49 6.98 37.31 0.26 0.75 16 29 O -0.36 -5.47 9.24 -35.23 -0.33 -5.80 16 30 H 0.06 1.01 7.56 -51.92 -0.39 0.62 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.37 8.65 4.94 -40.82 -0.20 8.44 16 34 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 35 H 0.10 1.79 7.08 -51.93 -0.37 1.42 16 36 H 0.09 1.77 6.93 -51.93 -0.36 1.41 16 37 H 0.12 1.21 7.11 -51.93 -0.37 0.84 16 38 H 0.11 0.64 7.55 -51.93 -0.39 0.25 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.55 8.13 -51.93 -0.42 0.13 16 41 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 42 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 0.56 6.05 -51.93 -0.31 0.24 16 46 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -37.98 383.46 -6.97 -44.95 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -7.48 Total: 6.64 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 0.34 Total: 13.40 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: -0.37 Total: -61.59 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.53 Total: -26.97 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.71 Total: 17.79 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.98 -6.97 -44.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276777491.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.486 kcal (2) G-P(sol) polarization free energy of solvation -37.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds