Wall clock time and date at job start Sat Apr 11 2020 06:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.53008 * 109.47082 * 240.00755 * 2 1 3 5 5 N 1.46897 * 109.47070 * 184.99782 * 4 2 1 6 6 C 1.46898 * 110.99815 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.46861 * 179.97438 * 6 5 4 8 8 O 1.21291 * 120.00147 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99742 * 180.02562 * 7 6 5 10 10 C 1.37099 * 120.00028 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99739 * 0.02562 * 10 9 7 12 12 C 1.38942 * 119.99960 * 179.97438 * 10 9 7 13 13 N 1.31413 * 119.99892 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 120.00216 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47074 * 89.99440 * 14 12 10 16 16 H 1.48503 * 109.46995 * 209.99530 * 14 12 10 17 17 H 1.48497 * 109.46739 * 329.99530 * 14 12 10 18 18 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 19 19 C 1.46499 * 120.00062 * 60.00143 * 18 2 1 20 20 C 1.34779 * 119.99726 * 239.99897 * 18 2 1 21 21 O 1.21279 * 120.00410 * 359.97438 * 20 18 2 22 22 C 1.50703 * 119.99541 * 179.97438 * 20 18 2 23 23 C 1.53000 * 109.46653 * 179.97438 * 22 20 18 24 24 H 1.08995 * 110.62484 * 303.38875 * 23 22 20 25 25 C 1.54262 * 110.68922 * 66.45686 * 23 22 20 26 26 O 1.45592 * 106.37227 * 117.32481 * 25 23 22 27 27 C 1.34527 * 109.63767 * 21.26713 * 26 25 23 28 28 O 1.20821 * 126.43131 * 147.15571 * 27 26 25 29 29 C 1.51787 * 107.13857 * 327.17373 * 27 26 25 30 30 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 32 32 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 33 33 H 1.09003 * 109.46861 * 304.99659 * 4 2 1 34 34 H 1.08996 * 109.47113 * 65.00108 * 4 2 1 35 35 H 1.00900 * 111.00345 * 303.95310 * 5 4 2 36 36 H 1.08997 * 109.47491 * 300.00168 * 6 5 4 37 37 H 1.09005 * 109.46861 * 60.00459 * 6 5 4 38 38 H 0.96998 * 120.00140 * 0.02562 * 9 7 6 39 39 H 0.97005 * 119.99950 * 180.02562 * 13 12 10 40 40 H 1.09002 * 109.47391 * 89.99876 * 19 18 2 41 41 H 1.09001 * 109.46813 * 329.99933 * 19 18 2 42 42 H 1.09004 * 109.47041 * 210.00060 * 19 18 2 43 43 H 1.08996 * 109.47057 * 299.99739 * 22 20 18 44 44 H 1.08996 * 109.47084 * 60.00703 * 22 20 18 45 45 H 1.08999 * 110.07648 * 236.54766 * 25 23 22 46 46 H 1.08995 * 110.07880 * 358.09735 * 25 23 22 47 47 H 1.08996 * 110.61481 * 272.11791 * 29 27 26 48 48 H 1.09001 * 110.61113 * 149.13760 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5040 -0.8265 -1.1906 6 6 4.0302 -1.5156 -2.3764 7 6 5.5316 -1.6040 -2.2810 8 8 6.1067 -1.1391 -1.3196 9 7 6.2354 -2.1996 -3.2642 10 6 7.6013 -2.2796 -3.1777 11 1 8.1133 -1.8657 -2.3216 12 6 8.3267 -2.8941 -4.1909 13 7 9.6360 -2.9712 -4.1078 14 14 7.4411 -3.6106 -5.6714 15 1 7.3207 -2.5725 -6.7263 16 1 8.2122 -4.7651 -6.1985 17 1 6.0863 -4.0639 -5.2660 18 7 2.0183 -0.6907 1.1961 19 6 1.6645 -2.0933 1.4278 20 6 2.7932 -0.0358 2.0833 21 8 3.0866 1.1252 1.8912 22 6 3.2951 -0.7462 3.3139 23 6 4.1458 0.2152 4.1464 24 1 4.9665 0.6154 3.5512 25 6 3.2785 1.3568 4.7159 26 8 3.3387 1.2339 6.1654 27 6 4.4314 0.5312 6.5146 28 8 5.0921 0.6821 7.5148 29 6 4.6786 -0.4866 5.4160 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.6054 -1.7197 -1.2954 34 1 1.7516 -0.1581 -2.1370 35 1 3.9280 0.0827 -1.0825 36 1 3.6094 -2.5196 -2.4299 37 1 3.7556 -0.9583 -3.2721 38 1 5.7756 -2.5710 -4.0332 39 1 10.1425 -3.3999 -4.8154 40 1 2.4158 -2.7378 0.9713 41 1 0.6905 -2.3003 0.9844 42 1 1.6239 -2.2855 2.5000 43 1 2.4472 -1.0883 3.9071 44 1 3.9006 -1.6027 3.0175 45 1 3.6791 2.3217 4.4054 46 1 2.2490 1.2509 4.3739 47 1 4.1219 -1.4034 5.6098 48 1 5.7439 -0.6964 5.3199 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319445020.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:15 Heat of formation + Delta-G solvation = -141.981645 kcal Electronic energy + Delta-G solvation = -30191.243434 eV Core-core repulsion = 25860.865383 eV Total energy + Delta-G solvation = -4330.378050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.28624 -40.09431 -38.52124 -37.78097 -36.97514 -34.83555 -34.43010 -33.87592 -31.97640 -31.65286 -29.12697 -27.82905 -27.48591 -27.01757 -25.04599 -23.23759 -22.42538 -21.60521 -20.77722 -19.46259 -19.09763 -18.33150 -17.63494 -17.38687 -16.89751 -16.59085 -16.40973 -15.89149 -15.80862 -15.40947 -14.91995 -14.69569 -14.42806 -14.17482 -13.91096 -13.69286 -13.58341 -13.29551 -13.28416 -13.05894 -12.87434 -12.80647 -12.56806 -12.43880 -12.24436 -12.15913 -12.11787 -11.79818 -11.71392 -11.65038 -11.35610 -11.19808 -11.02665 -10.70250 -10.63286 -10.46170 -10.00929 -9.82679 -9.60611 -8.78681 -8.58234 -8.23352 -8.17561 -6.34132 -3.85753 1.67632 2.55178 2.82801 2.98695 3.03210 3.11760 3.13649 3.70594 3.74269 3.89960 4.00595 4.07163 4.25355 4.36719 4.55458 4.74981 4.78271 4.82235 4.89998 4.96523 4.99835 5.07954 5.13331 5.18373 5.28086 5.31124 5.32201 5.36845 5.39322 5.42858 5.50925 5.57317 5.65674 5.73725 5.75198 5.77170 5.86685 5.89858 6.38733 6.48317 7.03296 7.19250 7.26722 7.51062 7.55177 8.09145 8.11257 8.56543 8.91909 9.39136 9.79416 10.79013 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011467 B = 0.002538 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.103871 B =11027.755754 C =12947.161159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 H 0.101 0.899 4 C 0.048 3.952 5 N -0.663 5.663 6 C 0.049 3.951 7 C 0.449 3.551 8 O -0.563 6.563 9 N -0.591 5.591 10 C -0.305 4.305 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.270 1.270 18 N -0.592 5.592 19 C 0.077 3.923 20 C 0.522 3.478 21 O -0.543 6.543 22 C -0.132 4.132 23 C -0.106 4.106 24 H 0.112 0.888 25 C 0.070 3.930 26 O -0.361 6.361 27 C 0.489 3.511 28 O -0.451 6.451 29 C -0.184 4.184 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.352 0.648 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.117 0.883 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.372 1.356 9.815 24.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 H 0.119 0.881 4 C -0.083 4.083 5 N -0.295 5.295 6 C -0.084 4.084 7 C 0.235 3.765 8 O -0.444 6.444 9 N -0.231 5.231 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 N -0.325 5.325 19 C -0.066 4.066 20 C 0.310 3.690 21 O -0.420 6.420 22 C -0.171 4.171 23 C -0.125 4.125 24 H 0.130 0.870 25 C -0.004 4.004 26 O -0.280 6.280 27 C 0.329 3.671 28 O -0.333 6.333 29 C -0.222 4.222 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.172 0.828 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.114 0.886 44 H 0.127 0.873 45 H 0.112 0.888 46 H 0.120 0.880 47 H 0.135 0.865 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -21.452 1.816 11.267 24.299 hybrid contribution -0.637 -0.353 -2.339 2.450 sum -22.089 1.463 8.928 23.870 Atomic orbital electron populations 1.22095 0.94649 1.02392 1.02624 1.21083 0.93465 0.98070 0.84037 0.88093 1.22361 0.89549 1.00490 0.95894 1.60006 1.03157 1.27028 1.39358 1.21699 0.95049 0.99904 0.91745 1.19707 0.87936 0.84129 0.84725 1.90574 1.70976 1.50369 1.32517 1.42214 1.07857 1.53053 1.19945 1.19422 0.79504 1.36005 1.08434 0.86314 1.25042 0.95442 0.97647 0.98047 1.69623 1.05075 1.43399 1.34008 0.86669 0.79559 0.79808 0.83316 1.19671 1.20156 1.19529 1.47522 1.50598 1.12249 1.22105 1.21780 1.01308 0.82000 1.01525 1.20392 0.77513 0.86838 0.84245 1.90691 1.57243 1.17166 1.76938 1.21778 1.00777 0.99788 0.94788 1.22180 0.99522 0.95255 0.95548 0.86983 1.24031 1.02490 1.00043 0.73868 1.87083 1.42482 1.71910 1.26481 1.23330 0.76969 0.80675 0.86164 1.90714 1.44711 1.68898 1.28992 1.23137 1.05810 0.99732 0.93563 0.92119 0.92024 0.91340 0.90876 0.94478 0.82784 0.89687 0.93922 0.79748 0.91594 0.91564 0.91264 0.91379 0.88574 0.87329 0.88841 0.87976 0.86505 0.86767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.17 37.16 0.34 -0.67 16 2 C 0.14 1.25 2.88 -67.93 -0.20 1.06 16 3 H 0.10 1.14 6.90 -51.93 -0.36 0.78 16 4 C 0.05 0.47 4.98 -3.82 -0.02 0.45 16 5 N -0.66 -9.47 5.85 -115.05 -0.67 -10.14 16 6 C 0.05 0.76 6.17 -4.97 -0.03 0.73 16 7 C 0.45 9.90 7.82 -10.98 -0.09 9.81 16 8 O -0.56 -14.80 15.78 5.55 0.09 -14.71 16 9 N -0.59 -13.78 5.09 -10.96 -0.06 -13.84 16 10 C -0.30 -8.52 10.16 -14.94 -0.15 -8.67 16 11 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16 12 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 13 N -0.88 -25.55 13.96 55.50 0.77 -24.77 16 14 Si 0.88 19.04 27.74 -169.99 -4.71 14.33 16 15 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 17 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 18 N -0.59 -5.40 2.49 -173.93 -0.43 -5.84 16 19 C 0.08 0.50 9.40 59.85 0.56 1.06 16 20 C 0.52 5.54 7.21 -10.98 -0.08 5.46 16 21 O -0.54 -7.51 14.44 5.56 0.08 -7.43 16 22 C -0.13 -0.99 3.48 -27.88 -0.10 -1.08 16 23 C -0.11 -0.89 2.75 -89.15 -0.24 -1.13 16 24 H 0.11 1.12 8.04 -51.93 -0.42 0.70 16 25 C 0.07 0.62 6.50 37.82 0.25 0.86 16 26 O -0.36 -3.96 11.07 -39.60 -0.44 -4.40 16 27 C 0.49 5.50 8.57 36.54 0.31 5.81 16 28 O -0.45 -6.65 18.00 -18.28 -0.33 -6.98 16 29 C -0.18 -1.41 6.58 -26.54 -0.17 -1.59 16 30 H 0.06 0.32 6.66 -51.93 -0.35 -0.02 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.65 7.84 -51.93 -0.41 0.24 16 34 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.35 5.76 8.43 -39.29 -0.33 5.43 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.37 7.54 5.76 -40.82 -0.24 7.30 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.34 6.43 -51.93 -0.33 0.01 16 42 H 0.07 0.30 6.44 -51.93 -0.33 -0.04 16 43 H 0.10 0.47 7.40 -51.93 -0.38 0.08 16 44 H 0.11 0.80 8.11 -51.93 -0.42 0.37 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.10 0.81 7.33 -51.93 -0.38 0.43 16 47 H 0.12 0.63 7.82 -51.93 -0.41 0.23 16 48 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 394.29 15.07 5.94 5.94 Total: -1.00 -36.18 394.29 -6.76 -42.94 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -7.29 Total: 11.77 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 0.29 Total: 13.13 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.39 Total: -54.59 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -0.60 Total: -33.52 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.71 Total: 14.33 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.18 -6.76 -42.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319445020.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.039 kcal (2) G-P(sol) polarization free energy of solvation -36.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds