Wall clock time and date at job start Sat Apr 11 2020 06:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.53008 * 109.47082 * 240.00755 * 2 1 3 5 5 N 1.46897 * 109.47070 * 184.99782 * 4 2 1 6 6 C 1.46898 * 110.99815 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.46861 * 179.97438 * 6 5 4 8 8 O 1.21291 * 120.00147 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99742 * 180.02562 * 7 6 5 10 10 C 1.37099 * 120.00028 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99739 * 0.02562 * 10 9 7 12 12 C 1.38942 * 119.99960 * 179.97438 * 10 9 7 13 13 N 1.31413 * 119.99892 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 120.00216 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47074 * 89.99440 * 14 12 10 16 16 H 1.48503 * 109.46995 * 209.99530 * 14 12 10 17 17 H 1.48497 * 109.46739 * 329.99530 * 14 12 10 18 18 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 19 19 C 1.46499 * 120.00062 * 60.00143 * 18 2 1 20 20 C 1.34779 * 119.99726 * 239.99897 * 18 2 1 21 21 O 1.21279 * 120.00410 * 359.97438 * 20 18 2 22 22 C 1.50703 * 119.99541 * 179.97438 * 20 18 2 23 23 C 1.53000 * 109.46653 * 179.97438 * 22 20 18 24 24 H 1.08995 * 110.62484 * 303.38875 * 23 22 20 25 25 C 1.54262 * 110.68922 * 66.45686 * 23 22 20 26 26 O 1.45592 * 106.37227 * 117.32481 * 25 23 22 27 27 C 1.34527 * 109.63767 * 21.26713 * 26 25 23 28 28 O 1.20821 * 126.43131 * 147.15571 * 27 26 25 29 29 C 1.51787 * 107.13857 * 327.17373 * 27 26 25 30 30 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 32 32 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 33 33 H 1.09003 * 109.46861 * 304.99659 * 4 2 1 34 34 H 1.08996 * 109.47113 * 65.00108 * 4 2 1 35 35 H 1.00900 * 111.00345 * 303.95310 * 5 4 2 36 36 H 1.08997 * 109.47491 * 300.00168 * 6 5 4 37 37 H 1.09005 * 109.46861 * 60.00459 * 6 5 4 38 38 H 0.96998 * 120.00140 * 0.02562 * 9 7 6 39 39 H 0.97005 * 119.99950 * 180.02562 * 13 12 10 40 40 H 1.09002 * 109.47391 * 89.99876 * 19 18 2 41 41 H 1.09001 * 109.46813 * 329.99933 * 19 18 2 42 42 H 1.09004 * 109.47041 * 210.00060 * 19 18 2 43 43 H 1.08996 * 109.47057 * 299.99739 * 22 20 18 44 44 H 1.08996 * 109.47084 * 60.00703 * 22 20 18 45 45 H 1.08999 * 110.07648 * 236.54766 * 25 23 22 46 46 H 1.08995 * 110.07880 * 358.09735 * 25 23 22 47 47 H 1.08996 * 110.61481 * 272.11791 * 29 27 26 48 48 H 1.09001 * 110.61113 * 149.13760 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5040 -0.8265 -1.1906 6 6 4.0302 -1.5156 -2.3764 7 6 5.5316 -1.6040 -2.2810 8 8 6.1067 -1.1391 -1.3196 9 7 6.2354 -2.1996 -3.2642 10 6 7.6013 -2.2796 -3.1777 11 1 8.1133 -1.8657 -2.3216 12 6 8.3267 -2.8941 -4.1909 13 7 9.6360 -2.9712 -4.1078 14 14 7.4411 -3.6106 -5.6714 15 1 7.3207 -2.5725 -6.7263 16 1 8.2122 -4.7651 -6.1985 17 1 6.0863 -4.0639 -5.2660 18 7 2.0183 -0.6907 1.1961 19 6 1.6645 -2.0933 1.4278 20 6 2.7932 -0.0358 2.0833 21 8 3.0866 1.1252 1.8912 22 6 3.2951 -0.7462 3.3139 23 6 4.1458 0.2152 4.1464 24 1 4.9665 0.6154 3.5512 25 6 3.2785 1.3568 4.7159 26 8 3.3387 1.2339 6.1654 27 6 4.4314 0.5312 6.5146 28 8 5.0921 0.6821 7.5148 29 6 4.6786 -0.4866 5.4160 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.6054 -1.7197 -1.2954 34 1 1.7516 -0.1581 -2.1370 35 1 3.9280 0.0827 -1.0825 36 1 3.6094 -2.5196 -2.4299 37 1 3.7556 -0.9583 -3.2721 38 1 5.7756 -2.5710 -4.0332 39 1 10.1425 -3.3999 -4.8154 40 1 2.4158 -2.7378 0.9713 41 1 0.6905 -2.3003 0.9844 42 1 1.6239 -2.2855 2.5000 43 1 2.4472 -1.0883 3.9071 44 1 3.9006 -1.6027 3.0175 45 1 3.6791 2.3217 4.4054 46 1 2.2490 1.2509 4.3739 47 1 4.1219 -1.4034 5.6098 48 1 5.7439 -0.6964 5.3199 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319445020.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:15 Heat of formation + Delta-G solvation = -170.342899 kcal Electronic energy + Delta-G solvation = -30192.473270 eV Core-core repulsion = 25860.865383 eV Total energy + Delta-G solvation = -4331.607887 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.11018 -40.89120 -40.24725 -38.73884 -37.88717 -36.17036 -35.53760 -35.17609 -33.74723 -32.68743 -29.84437 -29.07443 -28.19628 -27.60203 -26.56407 -24.48200 -23.21340 -22.42086 -21.55379 -21.23980 -20.30871 -19.75938 -18.42235 -18.18921 -17.85988 -17.71088 -17.26417 -17.20017 -16.77146 -16.56471 -16.39510 -15.75112 -15.52655 -15.22782 -14.95925 -14.88247 -14.67305 -14.35726 -14.34563 -14.04307 -14.00197 -13.77214 -13.56037 -13.32956 -13.13575 -12.99109 -12.91407 -12.78753 -12.72599 -12.54703 -12.45232 -12.41415 -12.05660 -11.97667 -11.70012 -11.51312 -11.48019 -11.34935 -10.63988 -10.43585 -10.24986 -9.46171 -9.27156 -8.41353 -6.02466 0.79250 1.29678 1.35640 1.44675 1.78828 1.96743 2.17281 2.23045 2.31818 2.73947 2.98681 3.15245 3.22679 3.41505 3.58478 3.67728 3.84575 4.04833 4.14845 4.27313 4.28490 4.36140 4.39398 4.44845 4.47761 4.51946 4.55950 4.64156 4.69968 4.74151 4.76705 4.84918 4.88539 4.88936 5.05421 5.13090 5.17272 5.35422 5.52598 5.66145 5.73949 5.90954 6.07133 6.30441 6.32361 6.57655 6.59949 6.88518 7.34709 7.40163 7.97489 8.76462 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011467 B = 0.002538 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.103871 B =11027.755754 C =12947.161159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.135 3.865 3 H 0.071 0.929 4 C 0.051 3.949 5 N -0.678 5.678 6 C 0.064 3.936 7 C 0.448 3.552 8 O -0.614 6.614 9 N -0.592 5.592 10 C -0.328 4.328 11 H 0.053 0.947 12 C -0.017 4.017 13 N -0.936 5.936 14 Si 0.966 3.034 15 H -0.259 1.259 16 H -0.276 1.276 17 H -0.228 1.228 18 N -0.592 5.592 19 C 0.072 3.928 20 C 0.508 3.492 21 O -0.587 6.587 22 C -0.124 4.124 23 C -0.102 4.102 24 H 0.088 0.912 25 C 0.073 3.927 26 O -0.373 6.373 27 C 0.486 3.514 28 O -0.495 6.495 29 C -0.169 4.169 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.051 0.949 35 H 0.335 0.665 36 H 0.117 0.883 37 H 0.072 0.928 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.051 0.949 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.133 0.867 44 H 0.115 0.885 45 H 0.083 0.917 46 H 0.116 0.884 47 H 0.151 0.849 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.615 -1.070 7.870 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.031 3.969 3 H 0.090 0.910 4 C -0.078 4.078 5 N -0.309 5.309 6 C -0.068 4.068 7 C 0.236 3.764 8 O -0.498 6.498 9 N -0.234 5.234 10 C -0.457 4.457 11 H 0.071 0.929 12 C -0.215 4.215 13 N -0.577 5.577 14 Si 0.786 3.214 15 H -0.183 1.183 16 H -0.201 1.201 17 H -0.151 1.151 18 N -0.323 5.323 19 C -0.070 4.070 20 C 0.298 3.702 21 O -0.468 6.468 22 C -0.163 4.163 23 C -0.121 4.121 24 H 0.107 0.893 25 C -0.001 4.001 26 O -0.291 6.291 27 C 0.329 3.671 28 O -0.380 6.380 29 C -0.207 4.207 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.153 0.847 36 H 0.135 0.865 37 H 0.090 0.910 38 H 0.225 0.775 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.151 0.849 44 H 0.133 0.867 45 H 0.101 0.899 46 H 0.134 0.866 47 H 0.169 0.831 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -25.766 -0.640 9.304 27.402 hybrid contribution 0.697 0.500 -1.655 1.864 sum -25.069 -0.141 7.649 26.211 Atomic orbital electron populations 1.22010 0.92017 1.03670 1.02969 1.21092 0.95330 0.96529 0.83962 0.91049 1.22473 0.86572 1.01996 0.96775 1.60033 1.05723 1.26059 1.39087 1.21622 0.89352 1.02352 0.93478 1.21060 0.90851 0.81469 0.83055 1.90557 1.72958 1.51801 1.34486 1.42038 1.06075 1.53986 1.21268 1.18983 0.81962 1.37405 1.07352 0.92901 1.26143 0.96194 0.97332 1.01846 1.69814 1.07561 1.44534 1.35772 0.85349 0.79793 0.78767 0.77492 1.18335 1.20087 1.15128 1.47678 1.49802 1.13272 1.21571 1.21986 1.01792 0.79833 1.03399 1.20983 0.77339 0.86595 0.85290 1.90676 1.58881 1.19161 1.78046 1.21798 1.01803 0.99012 0.93729 1.22080 0.98988 0.95428 0.95653 0.89346 1.24072 1.03335 0.99891 0.72788 1.87060 1.42352 1.72077 1.27629 1.23891 0.76275 0.80865 0.86061 1.90687 1.46155 1.70137 1.31053 1.23124 1.06601 0.99646 0.91283 0.90250 0.92347 0.90423 0.88757 0.93062 0.84700 0.86487 0.90980 0.77479 0.91172 0.93040 0.89111 0.88927 0.84946 0.86711 0.89905 0.86572 0.83138 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.17 71.98 0.66 -0.75 16 2 C 0.13 2.20 2.88 44.99 0.13 2.33 16 3 H 0.07 1.61 6.90 -2.39 -0.02 1.59 16 4 C 0.05 0.85 4.98 86.31 0.43 1.28 16 5 N -0.68 -18.18 5.85 -517.92 -3.03 -21.21 16 6 C 0.06 1.80 6.17 85.56 0.53 2.33 16 7 C 0.45 19.58 7.82 87.66 0.69 20.27 16 8 O -0.61 -33.59 15.78 -3.06 -0.05 -33.64 16 9 N -0.59 -27.21 5.09 -306.98 -1.56 -28.78 16 10 C -0.33 -19.03 10.16 84.04 0.85 -18.17 16 11 H 0.05 3.69 7.39 -2.91 -0.02 3.66 16 12 C -0.02 -0.92 5.50 84.92 0.47 -0.45 16 13 N -0.94 -56.25 13.96 21.66 0.30 -55.95 16 14 Si 0.97 37.94 27.74 68.60 1.90 39.84 16 15 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 16 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 17 H -0.23 -7.37 6.52 99.48 0.65 -6.72 16 18 N -0.59 -9.59 2.49 -822.57 -2.04 -11.64 16 19 C 0.07 0.67 9.40 127.77 1.20 1.87 16 20 C 0.51 10.40 7.21 87.66 0.63 11.03 16 21 O -0.59 -16.77 14.44 -3.02 -0.04 -16.82 16 22 C -0.12 -1.63 3.48 29.85 0.10 -1.52 16 23 C -0.10 -1.68 2.75 -9.84 -0.03 -1.71 16 24 H 0.09 1.89 8.04 -2.39 -0.02 1.87 16 25 C 0.07 1.29 6.50 72.41 0.47 1.76 16 26 O -0.37 -8.17 11.07 -54.76 -0.61 -8.77 16 27 C 0.49 11.02 8.57 71.58 0.61 11.63 16 28 O -0.50 -15.11 18.00 21.53 0.39 -14.72 16 29 C -0.17 -2.40 6.58 30.72 0.20 -2.20 16 30 H 0.08 0.47 6.66 -2.39 -0.02 0.46 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 1.21 7.84 -2.39 -0.02 1.19 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.34 11.00 8.43 -89.69 -0.76 10.24 16 36 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.39 14.64 5.76 -92.71 -0.53 14.10 16 39 H 0.28 15.29 8.31 -92.70 -0.77 14.52 16 40 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.09 0.47 6.43 -2.39 -0.02 0.45 16 42 H 0.09 0.41 6.44 -2.38 -0.02 0.39 16 43 H 0.13 0.77 7.40 -2.39 -0.02 0.75 16 44 H 0.11 1.43 8.11 -2.39 -0.02 1.41 16 45 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.12 1.75 7.33 -2.39 -0.02 1.73 16 47 H 0.15 1.16 7.82 -2.39 -0.02 1.14 16 48 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -88.01 394.29 1.86 -86.15 By element: Atomic # 1 Polarization: 38.18 SS G_CDS: -0.35 Total: 37.83 kcal Atomic # 6 Polarization: 20.76 SS G_CDS: 6.95 Total: 27.71 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -6.33 Total: -117.57 kcal Atomic # 8 Polarization: -73.64 SS G_CDS: -0.31 Total: -73.95 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 1.90 Total: 39.84 kcal Total: -88.01 1.86 -86.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319445020.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.195 kcal (2) G-P(sol) polarization free energy of solvation -88.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds