Wall clock time and date at job start Sat Apr 11 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46460 * 2 1 4 4 C 1.52993 * 109.47404 * 240.00174 * 2 1 3 5 5 N 1.46901 * 109.46977 * 184.99825 * 4 2 1 6 6 C 1.46902 * 110.99844 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.47027 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00255 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72353 * 7 6 5 10 10 C 1.37101 * 120.00327 * 180.27606 * 9 7 6 11 11 H 1.08001 * 119.99426 * 0.02562 * 10 9 7 12 12 C 1.38942 * 120.00412 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00005 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00325 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46636 * 60.00069 * 14 12 10 16 16 H 1.48498 * 109.47594 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47124 * 300.00305 * 14 12 10 18 18 N 1.46498 * 109.46996 * 119.99551 * 2 1 3 19 19 C 1.46501 * 120.00232 * 60.00602 * 18 2 1 20 20 C 1.34778 * 120.00142 * 240.00270 * 18 2 1 21 21 O 1.21285 * 120.00056 * 0.02562 * 20 18 2 22 22 C 1.50699 * 120.00179 * 180.02562 * 20 18 2 23 23 C 1.53008 * 109.46972 * 180.02562 * 22 20 18 24 24 H 1.08994 * 110.75244 * 54.29527 * 23 22 20 25 25 C 1.54266 * 110.84346 * 290.82619 * 23 22 20 26 26 O 1.45372 * 106.63004 * 226.61934 * 25 23 22 27 27 C 1.34005 * 111.49430 * 357.72844 * 26 25 23 28 28 O 1.20818 * 125.69982 * 199.61787 * 27 26 25 29 29 C 1.51997 * 108.70774 * 19.51440 * 27 26 25 30 30 H 1.08994 * 109.47766 * 299.99772 * 1 2 3 31 31 H 1.08999 * 109.47131 * 60.00487 * 1 2 3 32 32 H 1.09007 * 109.46946 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47854 * 64.99714 * 4 2 1 34 34 H 1.09005 * 109.47140 * 304.99595 * 4 2 1 35 35 H 1.00895 * 111.00207 * 303.94924 * 5 4 2 36 36 H 1.09004 * 109.47131 * 60.00016 * 6 5 4 37 37 H 1.08994 * 109.47471 * 299.99766 * 6 5 4 38 38 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 39 39 H 0.96996 * 120.00330 * 179.97438 * 13 12 10 40 40 H 1.09005 * 109.46954 * 89.99659 * 19 18 2 41 41 H 1.08994 * 109.46975 * 209.99845 * 19 18 2 42 42 H 1.09003 * 109.46768 * 330.00157 * 19 18 2 43 43 H 1.08997 * 109.46813 * 300.00021 * 22 20 18 44 44 H 1.08999 * 109.47001 * 60.00141 * 22 20 18 45 45 H 1.09000 * 110.02982 * 345.91251 * 25 23 22 46 46 H 1.08997 * 110.02562 * 107.32762 * 25 23 22 47 47 H 1.09002 * 110.89003 * 213.33726 * 29 27 26 48 48 H 1.08998 * 110.66811 * 90.00360 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5041 -0.8265 -1.1903 6 6 4.0304 -1.5157 -2.3760 7 6 5.5318 -1.6041 -2.2806 8 8 6.1068 -1.1391 -1.3191 9 7 6.2351 -2.2051 -3.2606 10 6 7.6005 -2.2906 -3.1711 11 1 8.1125 -1.8765 -2.3150 12 6 8.3257 -2.9097 -4.1817 13 7 7.7028 -3.4130 -5.2237 14 14 10.1861 -3.0255 -4.0601 15 1 10.5560 -3.7829 -2.8374 16 1 10.7179 -3.7260 -5.2566 17 1 10.7635 -1.6592 -3.9896 18 7 2.0183 -0.6905 1.1962 19 6 1.6645 -2.0931 1.4281 20 6 2.7931 -0.0355 2.0834 21 8 3.0857 1.1258 1.8917 22 6 3.2959 -0.7459 3.3136 23 6 4.1452 0.2161 4.1468 24 1 3.5899 1.1269 4.3705 25 6 5.4696 0.5435 3.4267 26 8 6.5255 0.4110 4.4172 27 6 6.0308 0.1041 5.6242 28 8 6.6001 0.2561 6.6789 29 6 4.6325 -0.4652 5.4476 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.7517 -0.1583 -2.1370 34 1 1.6055 -1.7198 -1.2951 35 1 3.9280 0.0827 -1.0823 36 1 3.7558 -0.9586 -3.2718 37 1 3.6097 -2.5197 -2.4294 38 1 5.7753 -2.5772 -4.0294 39 1 8.2090 -3.8450 -5.9294 40 1 2.4159 -2.7376 0.9718 41 1 1.6238 -2.2850 2.5003 42 1 0.6905 -2.3002 0.9847 43 1 2.4483 -1.0888 3.9070 44 1 3.9017 -1.6020 3.0167 45 1 5.6340 -0.1591 2.6097 46 1 5.4437 1.5633 3.0430 47 1 3.9934 -0.1937 6.2878 48 1 4.6705 -1.5476 5.3250 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319445023.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:18 Heat of formation + Delta-G solvation = -151.336176 kcal Electronic energy + Delta-G solvation = -30424.146636 eV Core-core repulsion = 26093.362943 eV Total energy + Delta-G solvation = -4330.783693 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17196 -40.05744 -38.32430 -37.64197 -36.91054 -34.76184 -34.44367 -33.80260 -31.90837 -31.20747 -29.05386 -27.65539 -27.37732 -26.97999 -25.02242 -23.33511 -22.39487 -21.51515 -20.72461 -19.37021 -18.98408 -17.89777 -17.65967 -17.31662 -16.80716 -16.54475 -16.13706 -15.91004 -15.70997 -15.23577 -14.70166 -14.58925 -14.28444 -14.07569 -13.88751 -13.72086 -13.59851 -13.51524 -13.27176 -13.14449 -12.83866 -12.54772 -12.45553 -12.38989 -12.18276 -12.01672 -11.75370 -11.62435 -11.54472 -11.47950 -11.39583 -11.02750 -10.97482 -10.53299 -10.44832 -10.33269 -10.22617 -9.79531 -9.51173 -8.74085 -8.45902 -8.09463 -7.97559 -6.43213 -3.84131 1.93259 2.57047 2.84465 3.18799 3.19869 3.25564 3.30347 3.72919 3.88776 3.93156 4.04717 4.22097 4.30765 4.41802 4.64203 4.78742 4.87494 4.90456 5.00238 5.04363 5.05931 5.13455 5.18954 5.23809 5.28991 5.30829 5.38727 5.40775 5.44045 5.49899 5.67950 5.69474 5.74340 5.77883 5.80959 5.92485 5.93054 6.23078 6.42168 6.73865 7.15934 7.29165 7.33416 7.53822 7.60253 8.04616 8.10988 8.59473 9.16492 9.52508 10.03869 10.74433 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008157 B = 0.003153 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3431.915620 B = 8877.834247 C =11805.247858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 H 0.101 0.899 4 C 0.048 3.952 5 N -0.663 5.663 6 C 0.051 3.949 7 C 0.440 3.560 8 O -0.582 6.582 9 N -0.564 5.564 10 C -0.300 4.300 11 H 0.102 0.898 12 C 0.023 3.977 13 N -0.903 5.903 14 Si 0.930 3.070 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.273 1.273 18 N -0.592 5.592 19 C 0.077 3.923 20 C 0.521 3.479 21 O -0.543 6.543 22 C -0.131 4.131 23 C -0.105 4.105 24 H 0.105 0.895 25 C 0.064 3.936 26 O -0.348 6.348 27 C 0.485 3.515 28 O -0.463 6.463 29 C -0.184 4.184 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.351 0.649 36 H 0.041 0.959 37 H 0.084 0.916 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.111 0.889 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.104 2.226 12.572 22.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.034 3.966 3 H 0.119 0.881 4 C -0.083 4.083 5 N -0.295 5.295 6 C -0.081 4.081 7 C 0.226 3.774 8 O -0.466 6.466 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.324 5.324 19 C -0.066 4.066 20 C 0.310 3.690 21 O -0.421 6.421 22 C -0.171 4.171 23 C -0.124 4.124 24 H 0.123 0.877 25 C -0.010 4.010 26 O -0.264 6.264 27 C 0.326 3.674 28 O -0.347 6.347 29 C -0.222 4.222 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.170 0.830 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.129 0.871 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.992 2.585 13.744 22.788 hybrid contribution 0.286 0.000 -1.476 1.503 sum -17.707 2.585 12.268 21.696 Atomic orbital electron populations 1.22093 0.94695 1.02381 1.02577 1.21088 0.93448 0.98046 0.84060 0.88144 1.22353 0.89749 1.00450 0.95757 1.60024 1.02990 1.26833 1.39676 1.21665 0.95331 0.99710 0.91425 1.19795 0.87982 0.84584 0.85077 1.90528 1.71075 1.51828 1.33136 1.41860 1.07439 1.50752 1.19979 1.19653 0.81563 1.35066 1.06642 0.87976 1.25251 1.00685 0.96723 0.95199 1.69601 1.36824 1.38512 1.09480 0.85927 0.82118 0.78652 0.77604 1.19848 1.20971 1.19875 1.47515 1.50548 1.12235 1.22085 1.21783 1.01381 0.82010 1.01452 1.20373 0.77614 0.86817 0.84232 1.90689 1.57402 1.17110 1.76889 1.21738 1.01079 0.99409 0.94836 1.22243 0.96691 0.99890 0.93590 0.87691 1.24149 0.82334 1.05363 0.89154 1.86820 1.37892 1.81825 1.19843 1.23204 0.87118 0.74202 0.82892 1.90707 1.66773 1.51222 1.26026 1.23221 0.95751 1.03437 0.99820 0.92106 0.91324 0.92115 0.94510 0.90899 0.82995 0.94058 0.89821 0.77526 0.91823 0.91524 0.91423 0.91239 0.88145 0.87684 0.87759 0.87727 0.87066 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.17 37.16 0.34 -0.74 16 2 C 0.14 1.31 2.88 -67.94 -0.20 1.12 16 3 H 0.10 1.17 6.90 -51.93 -0.36 0.82 16 4 C 0.05 0.50 4.98 -3.83 -0.02 0.48 16 5 N -0.66 -9.87 5.85 -115.06 -0.67 -10.55 16 6 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 7 C 0.44 10.11 7.82 -10.98 -0.09 10.03 16 8 O -0.58 -15.43 15.78 5.55 0.09 -15.34 16 9 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 10 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 11 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 13 N -0.90 -24.40 13.05 55.50 0.72 -23.67 16 14 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 N -0.59 -5.56 2.48 -173.93 -0.43 -5.99 16 19 C 0.08 0.52 9.40 59.85 0.56 1.08 16 20 C 0.52 5.61 7.49 -10.99 -0.08 5.53 16 21 O -0.54 -7.63 14.54 5.55 0.08 -7.55 16 22 C -0.13 -0.97 3.53 -27.88 -0.10 -1.07 16 23 C -0.11 -0.88 2.67 -89.05 -0.24 -1.12 16 24 H 0.10 0.87 7.97 -51.93 -0.41 0.46 16 25 C 0.06 0.75 6.63 37.82 0.25 1.00 16 26 O -0.35 -4.86 10.95 -38.28 -0.42 -5.27 16 27 C 0.49 6.16 8.63 36.65 0.32 6.47 16 28 O -0.46 -7.39 18.00 -18.37 -0.33 -7.72 16 29 C -0.18 -1.41 6.54 -26.34 -0.17 -1.58 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.35 6.66 -51.93 -0.35 0.00 16 33 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.70 7.84 -51.93 -0.41 0.30 16 35 H 0.35 5.91 8.43 -39.29 -0.33 5.58 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 39 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.30 6.44 -51.93 -0.33 -0.03 16 42 H 0.07 0.37 6.43 -51.93 -0.33 0.03 16 43 H 0.10 0.45 7.40 -51.93 -0.38 0.07 16 44 H 0.10 0.77 8.01 -51.93 -0.42 0.35 16 45 H 0.10 1.34 7.70 -51.93 -0.40 0.94 16 46 H 0.10 1.27 8.07 -51.93 -0.42 0.85 16 47 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.12 0.69 7.91 -51.93 -0.41 0.28 16 LS Contribution 398.02 15.07 6.00 6.00 Total: -1.00 -35.15 398.02 -7.08 -42.23 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -7.35 Total: 11.83 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 0.31 Total: 14.09 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.44 Total: -54.33 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -0.58 Total: -35.88 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.15 -7.08 -42.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319445023.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.104 kcal (2) G-P(sol) polarization free energy of solvation -35.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds