Wall clock time and date at job start Sat Apr 11 2020 06:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46460 * 2 1 4 4 C 1.52993 * 109.47404 * 240.00174 * 2 1 3 5 5 N 1.46901 * 109.46977 * 184.99825 * 4 2 1 6 6 C 1.46902 * 110.99844 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.47027 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00255 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72353 * 7 6 5 10 10 C 1.37101 * 120.00327 * 180.27606 * 9 7 6 11 11 H 1.08001 * 119.99426 * 0.02562 * 10 9 7 12 12 C 1.38942 * 120.00412 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00005 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00325 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46636 * 60.00069 * 14 12 10 16 16 H 1.48498 * 109.47594 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47124 * 300.00305 * 14 12 10 18 18 N 1.46498 * 109.46996 * 119.99551 * 2 1 3 19 19 C 1.46501 * 120.00232 * 60.00602 * 18 2 1 20 20 C 1.34778 * 120.00142 * 240.00270 * 18 2 1 21 21 O 1.21285 * 120.00056 * 0.02562 * 20 18 2 22 22 C 1.50699 * 120.00179 * 180.02562 * 20 18 2 23 23 C 1.53008 * 109.46972 * 180.02562 * 22 20 18 24 24 H 1.08994 * 110.75244 * 54.29527 * 23 22 20 25 25 C 1.54266 * 110.84346 * 290.82619 * 23 22 20 26 26 O 1.45372 * 106.63004 * 226.61934 * 25 23 22 27 27 C 1.34005 * 111.49430 * 357.72844 * 26 25 23 28 28 O 1.20818 * 125.69982 * 199.61787 * 27 26 25 29 29 C 1.51997 * 108.70774 * 19.51440 * 27 26 25 30 30 H 1.08994 * 109.47766 * 299.99772 * 1 2 3 31 31 H 1.08999 * 109.47131 * 60.00487 * 1 2 3 32 32 H 1.09007 * 109.46946 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47854 * 64.99714 * 4 2 1 34 34 H 1.09005 * 109.47140 * 304.99595 * 4 2 1 35 35 H 1.00895 * 111.00207 * 303.94924 * 5 4 2 36 36 H 1.09004 * 109.47131 * 60.00016 * 6 5 4 37 37 H 1.08994 * 109.47471 * 299.99766 * 6 5 4 38 38 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 39 39 H 0.96996 * 120.00330 * 179.97438 * 13 12 10 40 40 H 1.09005 * 109.46954 * 89.99659 * 19 18 2 41 41 H 1.08994 * 109.46975 * 209.99845 * 19 18 2 42 42 H 1.09003 * 109.46768 * 330.00157 * 19 18 2 43 43 H 1.08997 * 109.46813 * 300.00021 * 22 20 18 44 44 H 1.08999 * 109.47001 * 60.00141 * 22 20 18 45 45 H 1.09000 * 110.02982 * 345.91251 * 25 23 22 46 46 H 1.08997 * 110.02562 * 107.32762 * 25 23 22 47 47 H 1.09002 * 110.89003 * 213.33726 * 29 27 26 48 48 H 1.08998 * 110.66811 * 90.00360 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5041 -0.8265 -1.1903 6 6 4.0304 -1.5157 -2.3760 7 6 5.5318 -1.6041 -2.2806 8 8 6.1068 -1.1391 -1.3191 9 7 6.2351 -2.2051 -3.2606 10 6 7.6005 -2.2906 -3.1711 11 1 8.1125 -1.8765 -2.3150 12 6 8.3257 -2.9097 -4.1817 13 7 7.7028 -3.4130 -5.2237 14 14 10.1861 -3.0255 -4.0601 15 1 10.5560 -3.7829 -2.8374 16 1 10.7179 -3.7260 -5.2566 17 1 10.7635 -1.6592 -3.9896 18 7 2.0183 -0.6905 1.1962 19 6 1.6645 -2.0931 1.4281 20 6 2.7931 -0.0355 2.0834 21 8 3.0857 1.1258 1.8917 22 6 3.2959 -0.7459 3.3136 23 6 4.1452 0.2161 4.1468 24 1 3.5899 1.1269 4.3705 25 6 5.4696 0.5435 3.4267 26 8 6.5255 0.4110 4.4172 27 6 6.0308 0.1041 5.6242 28 8 6.6001 0.2561 6.6789 29 6 4.6325 -0.4652 5.4476 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.7517 -0.1583 -2.1370 34 1 1.6055 -1.7198 -1.2951 35 1 3.9280 0.0827 -1.0823 36 1 3.7558 -0.9586 -3.2718 37 1 3.6097 -2.5197 -2.4294 38 1 5.7753 -2.5772 -4.0294 39 1 8.2090 -3.8450 -5.9294 40 1 2.4159 -2.7376 0.9718 41 1 1.6238 -2.2850 2.5003 42 1 0.6905 -2.3002 0.9847 43 1 2.4483 -1.0888 3.9070 44 1 3.9017 -1.6020 3.0167 45 1 5.6340 -0.1591 2.6097 46 1 5.4437 1.5633 3.0430 47 1 3.9934 -0.1937 6.2878 48 1 4.6705 -1.5476 5.3250 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319445023.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:17 Heat of formation + Delta-G solvation = -177.647667 kcal Electronic energy + Delta-G solvation = -30425.287588 eV Core-core repulsion = 26093.362943 eV Total energy + Delta-G solvation = -4331.924645 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.09997 -40.88668 -40.10419 -38.70364 -37.88498 -36.14335 -35.50701 -35.24390 -33.28279 -32.66283 -29.79111 -28.94505 -28.21291 -27.60380 -26.65107 -24.59369 -23.23244 -22.41430 -21.56017 -21.03075 -19.97458 -19.75499 -18.52508 -18.14566 -17.88388 -17.75656 -17.15580 -17.08724 -16.69439 -16.40108 -16.36537 -15.97643 -15.47763 -15.16996 -15.10250 -14.86921 -14.67563 -14.37704 -14.26698 -14.05902 -13.87197 -13.51229 -13.46692 -13.18090 -13.11195 -12.97211 -12.91859 -12.79570 -12.73131 -12.49651 -12.43137 -12.38793 -12.14136 -12.12313 -11.70782 -11.50890 -11.49792 -11.31115 -10.62179 -10.34737 -10.01780 -9.45945 -9.27903 -8.47630 -5.96006 0.94993 1.38318 1.40545 1.50929 1.80212 2.05957 2.16708 2.23277 2.28253 2.92057 2.94498 3.19954 3.22128 3.50777 3.58153 3.69696 3.87192 4.05740 4.20835 4.32990 4.35782 4.39755 4.40032 4.44155 4.51778 4.53334 4.57361 4.65256 4.69515 4.69982 4.75580 4.81759 4.88233 4.90895 5.08072 5.13450 5.17001 5.34735 5.39937 5.72324 5.79218 5.89550 6.11465 6.33445 6.34501 6.58812 6.60007 7.12499 7.35590 7.56512 8.12332 8.69561 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008157 B = 0.003153 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3431.915620 B = 8877.834247 C =11805.247858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.137 3.863 3 H 0.072 0.928 4 C 0.050 3.950 5 N -0.672 5.672 6 C 0.067 3.933 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.334 4.334 11 H 0.076 0.924 12 C -0.010 4.010 13 N -0.920 5.920 14 Si 0.989 3.011 15 H -0.272 1.272 16 H -0.269 1.269 17 H -0.274 1.274 18 N -0.592 5.592 19 C 0.072 3.928 20 C 0.508 3.492 21 O -0.588 6.588 22 C -0.124 4.124 23 C -0.093 4.093 24 H 0.108 0.892 25 C 0.063 3.937 26 O -0.378 6.378 27 C 0.476 3.524 28 O -0.505 6.505 29 C -0.161 4.161 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.335 0.665 36 H 0.061 0.939 37 H 0.107 0.893 38 H 0.396 0.604 39 H 0.278 0.722 40 H 0.049 0.951 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.144 0.856 44 H 0.109 0.891 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.141 0.859 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.769 0.514 12.853 25.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.032 3.968 3 H 0.090 0.910 4 C -0.079 4.079 5 N -0.303 5.303 6 C -0.065 4.065 7 C 0.225 3.775 8 O -0.508 6.508 9 N -0.211 5.211 10 C -0.463 4.463 11 H 0.094 0.906 12 C -0.210 4.210 13 N -0.561 5.561 14 Si 0.813 3.187 15 H -0.197 1.197 16 H -0.193 1.193 17 H -0.200 1.200 18 N -0.323 5.323 19 C -0.070 4.070 20 C 0.298 3.702 21 O -0.469 6.469 22 C -0.163 4.163 23 C -0.112 4.112 24 H 0.127 0.873 25 C -0.011 4.011 26 O -0.295 6.295 27 C 0.320 3.680 28 O -0.392 6.392 29 C -0.198 4.198 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.153 0.847 36 H 0.079 0.921 37 H 0.125 0.875 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.162 0.838 44 H 0.128 0.872 45 H 0.105 0.895 46 H 0.108 0.892 47 H 0.159 0.841 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -20.718 0.830 13.989 25.013 hybrid contribution 1.095 0.573 -1.601 2.023 sum -19.623 1.403 12.388 23.249 Atomic orbital electron populations 1.22006 0.92012 1.03651 1.02965 1.21061 0.95344 0.96475 0.83889 0.91011 1.22472 0.86795 1.01838 0.96813 1.60049 1.05540 1.25858 1.38887 1.21521 0.90342 1.01624 0.93023 1.20934 0.90645 0.82358 0.83546 1.90504 1.72802 1.52966 1.34566 1.41923 1.06805 1.51615 1.20773 1.19593 0.83227 1.36779 1.06727 0.90575 1.25970 1.04651 0.95844 0.94561 1.69653 1.38278 1.38413 1.09720 0.85051 0.77121 0.78540 0.78021 1.19741 1.19319 1.19974 1.47673 1.49878 1.13267 1.21505 1.21989 1.01693 0.79799 1.03535 1.21028 0.77317 0.86575 0.85322 1.90675 1.59005 1.19172 1.78017 1.21778 1.02259 0.98521 0.93711 1.22195 0.94779 1.00641 0.93612 0.87345 1.24124 0.84044 1.04094 0.88813 1.86774 1.39785 1.81976 1.20977 1.24086 0.88856 0.73275 0.81788 1.90672 1.68417 1.52917 1.27219 1.23224 0.92086 1.04465 1.00062 0.92184 0.90547 0.90292 0.93442 0.89040 0.84725 0.92120 0.87451 0.76992 0.91280 0.93247 0.88552 0.89268 0.83792 0.87249 0.89474 0.89179 0.84097 0.83752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.17 71.98 0.66 -0.93 16 2 C 0.14 2.41 2.88 44.99 0.13 2.54 16 3 H 0.07 1.71 6.90 -2.38 -0.02 1.69 16 4 C 0.05 0.96 4.98 86.30 0.43 1.39 16 5 N -0.67 -19.57 5.85 -517.93 -3.03 -22.60 16 6 C 0.07 2.16 6.17 85.56 0.53 2.69 16 7 C 0.44 20.40 7.82 87.66 0.69 21.09 16 8 O -0.62 -34.20 15.78 -3.07 -0.05 -34.25 16 9 N -0.57 -29.11 5.29 -306.98 -1.62 -30.73 16 10 C -0.33 -18.98 9.68 84.04 0.81 -18.17 16 11 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 12 C -0.01 -0.56 5.50 84.92 0.47 -0.09 16 13 N -0.92 -49.39 13.05 21.66 0.28 -49.10 16 14 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 N -0.59 -9.99 2.48 -822.59 -2.04 -12.04 16 19 C 0.07 0.72 9.40 127.77 1.20 1.92 16 20 C 0.51 10.42 7.49 87.66 0.66 11.08 16 21 O -0.59 -16.95 14.54 -3.04 -0.04 -16.99 16 22 C -0.12 -1.51 3.53 29.85 0.11 -1.41 16 23 C -0.09 -1.44 2.67 -9.78 -0.03 -1.47 16 24 H 0.11 1.65 7.97 -2.39 -0.02 1.64 16 25 C 0.06 1.55 6.63 72.41 0.48 2.03 16 26 O -0.38 -11.14 10.95 -49.64 -0.54 -11.68 16 27 C 0.48 12.14 8.63 71.65 0.62 12.76 16 28 O -0.50 -16.48 18.00 21.62 0.39 -16.09 16 29 C -0.16 -2.05 6.54 30.85 0.20 -1.85 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.58 6.66 -2.38 -0.02 0.56 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 1.44 7.84 -2.38 -0.02 1.42 16 35 H 0.34 11.58 8.43 -89.70 -0.76 10.82 16 36 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.40 19.00 7.90 -92.71 -0.73 18.26 16 39 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 40 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.10 0.41 6.44 -2.39 -0.02 0.40 16 42 H 0.09 0.55 6.43 -2.39 -0.02 0.54 16 43 H 0.14 0.54 7.40 -2.39 -0.02 0.52 16 44 H 0.11 1.32 8.01 -2.39 -0.02 1.31 16 45 H 0.09 2.42 7.70 -2.39 -0.02 2.40 16 46 H 0.09 2.43 8.07 -2.39 -0.02 2.41 16 47 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.14 1.14 7.91 -2.39 -0.02 1.12 16 Total: -1.00 -81.55 398.02 1.83 -79.72 By element: Atomic # 1 Polarization: 37.37 SS G_CDS: -0.49 Total: 36.88 kcal Atomic # 6 Polarization: 24.65 SS G_CDS: 6.95 Total: 31.60 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -6.41 Total: -114.48 kcal Atomic # 8 Polarization: -78.77 SS G_CDS: -0.25 Total: -79.01 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -81.55 1.83 -79.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319445023.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.926 kcal (2) G-P(sol) polarization free energy of solvation -81.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds