Wall clock time and date at job start Sat Apr 11 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.55819 * 2 1 4 4 C 1.53293 * 109.51690 * 239.86567 * 2 1 3 5 5 N 1.47150 * 108.43963 * 187.72675 * 4 2 1 6 6 C 1.34778 * 120.99395 * 230.55846 * 5 4 2 7 7 O 1.21582 * 120.00386 * 174.78581 * 6 5 4 8 8 N 1.34784 * 119.99371 * 354.77989 * 6 5 4 9 9 C 1.46506 * 119.99319 * 184.97889 * 8 6 5 10 10 C 1.50702 * 109.46652 * 179.97438 * 9 8 6 11 11 O 1.21291 * 120.00087 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99880 * 179.97438 * 10 9 8 13 13 C 1.37094 * 120.00127 * 180.02562 * 12 10 9 14 14 H 1.07999 * 119.99905 * 0.02562 * 13 12 10 15 15 C 1.38953 * 120.00388 * 180.02562 * 13 12 10 16 16 N 1.31416 * 119.99470 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00408 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46989 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46737 * 119.99669 * 17 15 13 20 20 H 1.48501 * 109.47169 * 240.00001 * 17 15 13 21 21 C 1.47169 * 118.01654 * 50.57077 * 5 4 2 22 22 C 1.53173 * 108.40206 * 309.62912 * 21 5 4 23 23 C 1.53073 * 109.47473 * 291.92126 * 22 21 5 24 24 C 1.53112 * 109.16356 * 183.29621 * 23 22 21 25 25 O 1.42904 * 109.40145 * 57.46801 * 24 23 22 26 26 C 1.42905 * 114.13611 * 298.81371 * 25 24 23 27 27 C 1.53064 * 109.49121 * 172.21243 * 22 21 5 28 28 O 1.42834 * 109.45067 * 52.06367 * 22 21 5 29 29 H 1.08994 * 109.47099 * 180.12897 * 1 2 3 30 30 H 1.08996 * 109.46846 * 300.13513 * 1 2 3 31 31 H 1.09007 * 109.46697 * 60.12601 * 1 2 3 32 32 H 1.09007 * 109.67462 * 67.98007 * 4 2 1 33 33 H 1.08999 * 109.67591 * 307.47709 * 4 2 1 34 34 H 0.96998 * 120.00430 * 4.97857 * 8 6 5 35 35 H 1.08995 * 109.46715 * 299.99990 * 9 8 6 36 36 H 1.08992 * 109.46999 * 60.00403 * 9 8 6 37 37 H 0.97001 * 119.99933 * 0.02562 * 12 10 9 38 38 H 0.97005 * 119.99388 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.68071 * 69.35710 * 21 5 4 40 40 H 1.09004 * 109.68102 * 189.85679 * 21 5 4 41 41 H 1.09005 * 109.52145 * 303.20065 * 23 22 21 42 42 H 1.08997 * 109.52602 * 63.38777 * 23 22 21 43 43 H 1.09001 * 109.48228 * 297.49055 * 24 23 22 44 44 H 1.09002 * 109.48100 * 177.44538 * 24 23 22 45 45 H 1.09000 * 109.48194 * 301.21850 * 26 25 24 46 46 H 1.08996 * 109.48534 * 181.17051 * 26 25 24 47 47 H 1.09010 * 109.52223 * 296.61020 * 27 22 21 48 48 H 1.09002 * 109.52879 * 56.73179 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0271 0.0000 4 6 2.0422 -0.7254 -1.2496 5 7 3.5014 -0.8759 -1.1351 6 6 4.3186 -0.5032 -2.1400 7 8 5.5244 -0.5466 -1.9910 8 7 3.7988 -0.0825 -3.3103 9 6 4.6836 0.2185 -4.4386 10 6 3.8589 0.6647 -5.6184 11 8 2.6510 0.7248 -5.5260 12 7 4.4636 0.9968 -6.7761 13 6 3.7134 1.4032 -7.8493 14 1 2.6380 1.4576 -7.7668 15 6 4.3368 1.7452 -9.0431 16 7 5.6454 1.6785 -9.1436 17 14 3.3146 2.2983 -10.5056 18 1 1.8762 2.2869 -10.1368 19 1 3.7140 3.6741 -10.8966 20 1 3.5412 1.3741 -11.6457 21 6 4.0421 -1.4459 0.1094 22 6 3.4311 -0.6896 1.2930 23 6 3.9587 0.7472 1.3078 24 6 3.4086 1.4721 2.5392 25 8 3.7857 0.7580 3.7182 26 6 3.2778 -0.5763 3.7809 27 6 3.8229 -1.3838 2.5997 28 8 2.0085 -0.6762 1.1656 29 1 -0.3633 -1.0276 0.0023 30 1 -0.3633 0.5159 0.8887 31 1 -0.3633 0.5119 -0.8912 32 1 1.8020 -0.1406 -2.1377 33 1 1.5762 -1.7082 -1.3203 34 1 2.8391 0.0210 -3.4055 35 1 5.3746 1.0128 -4.1565 36 1 5.2471 -0.6751 -4.7068 37 1 5.4295 0.9483 -6.8501 38 1 6.0805 1.9169 -9.9772 39 1 3.7799 -2.5019 0.1738 40 1 5.1265 -1.3356 0.1229 41 1 5.0479 0.7349 1.3487 42 1 3.6331 1.2642 0.4051 43 1 2.3215 1.5217 2.4763 44 1 3.8172 2.4818 2.5794 45 1 2.1891 -0.5533 3.7341 46 1 3.5921 -1.0414 4.7152 47 1 3.4003 -2.3885 2.6194 48 1 4.9090 -1.4441 2.6688 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346658830.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:32 Heat of formation + Delta-G solvation = -146.566109 kcal Electronic energy + Delta-G solvation = -31175.628145 eV Core-core repulsion = 26845.051297 eV Total energy + Delta-G solvation = -4330.576848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.26045 -39.64837 -38.35307 -37.87066 -34.84249 -34.69938 -34.21343 -33.58858 -31.48033 -31.40958 -31.14299 -28.53438 -27.20062 -26.18074 -24.51531 -24.12670 -23.14833 -21.93395 -20.19893 -19.70257 -19.53192 -18.45679 -17.91118 -17.00570 -16.66642 -16.47608 -16.12393 -15.66559 -15.50420 -15.32213 -15.14643 -14.85441 -14.55826 -14.48248 -14.28973 -14.10144 -13.64320 -13.53227 -12.99010 -12.97056 -12.78843 -12.54840 -12.40061 -12.33909 -12.09630 -11.97881 -11.86077 -11.68478 -11.66066 -11.35089 -11.17137 -10.80087 -10.65297 -10.43723 -10.35676 -10.18054 -10.05602 -9.78524 -9.68100 -8.97014 -8.67119 -8.46168 -8.13484 -6.54629 -3.96726 2.51043 3.07618 3.20200 3.23355 3.24453 3.26720 3.61411 3.70826 3.88478 4.10574 4.25000 4.35717 4.40896 4.55207 4.68252 4.72811 4.79404 4.88387 4.96306 5.02240 5.11725 5.14107 5.21751 5.29797 5.30373 5.38889 5.40047 5.43690 5.48554 5.56042 5.61365 5.70310 5.77684 5.84497 5.88075 5.90097 5.95563 6.03313 6.26307 6.67128 6.88642 6.91461 6.92297 7.43145 7.89080 8.04352 8.41309 8.66509 9.01357 9.35899 9.83390 10.62269 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.023346 B = 0.002262 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.062996 B =12373.998952 C =12835.605797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.072 3.928 3 H 0.067 0.933 4 C 0.080 3.920 5 N -0.633 5.633 6 C 0.710 3.290 7 O -0.592 6.592 8 N -0.724 5.724 9 C 0.127 3.873 10 C 0.428 3.572 11 O -0.599 6.599 12 N -0.548 5.548 13 C -0.305 4.305 14 H 0.106 0.894 15 C 0.025 3.975 16 N -0.894 5.894 17 Si 0.933 3.067 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.112 3.888 22 C 0.106 3.894 23 C -0.178 4.178 24 C 0.067 3.933 25 O -0.384 6.384 26 C 0.065 3.935 27 C -0.138 4.138 28 O -0.366 6.366 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.406 0.594 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.093 0.907 45 H 0.059 0.941 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.768 -4.916 22.770 23.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.013 3.987 3 H 0.085 0.915 4 C -0.043 4.043 5 N -0.372 5.372 6 C 0.411 3.589 7 O -0.471 6.471 8 N -0.383 5.383 9 C -0.001 4.001 10 C 0.214 3.786 11 O -0.486 6.486 12 N -0.183 5.183 13 C -0.434 4.434 14 H 0.124 0.876 15 C -0.178 4.178 16 N -0.534 5.534 17 Si 0.759 3.241 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.012 4.012 22 C 0.066 3.934 23 C -0.215 4.215 24 C -0.010 4.010 25 O -0.303 6.303 26 C -0.012 4.012 27 C -0.176 4.176 28 O -0.285 6.285 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.245 0.755 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.122 0.878 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.111 0.889 45 H 0.077 0.923 46 H 0.112 0.888 47 H 0.103 0.897 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.545 -4.867 22.962 24.118 hybrid contribution -0.254 0.254 -1.526 1.568 sum -5.799 -4.613 21.436 22.680 Atomic orbital electron populations 1.21741 0.91948 1.03359 1.03063 1.22503 0.95488 0.95814 0.84852 0.91479 1.22409 0.80679 1.02004 0.99253 1.47171 1.05813 1.67724 1.16459 1.15713 0.84901 0.78142 0.80110 1.90897 1.12469 1.61776 1.81909 1.44944 1.11608 1.71174 1.10563 1.20813 0.92237 1.01664 0.85414 1.19730 0.88545 0.85637 0.84683 1.90481 1.14304 1.60312 1.83510 1.41794 1.09988 1.56734 1.09766 1.19770 0.93188 1.41414 0.89025 0.87625 1.25340 0.95976 0.97164 0.99279 1.69628 1.08140 1.47633 1.27982 0.85753 0.79819 0.78192 0.80295 1.19138 1.20591 1.20589 1.22075 1.00842 0.96671 0.81623 1.21774 0.81593 0.95004 0.95040 1.22716 1.02762 0.96333 0.99736 1.22495 0.99147 0.95293 0.84036 1.87916 1.75504 1.25841 1.40990 1.22505 0.98428 0.82471 0.97750 1.22144 1.02397 1.00102 0.92986 1.87936 1.20059 1.77248 1.43259 0.91451 0.91487 0.90394 0.88894 0.90393 0.75454 0.89907 0.90026 0.77000 0.91605 0.90977 0.87835 0.89698 0.90239 0.92791 0.88903 0.92318 0.88821 0.89719 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.57 37.16 0.36 -0.70 16 2 C 0.07 0.67 3.03 -26.58 -0.08 0.59 16 3 H 0.07 0.66 6.21 -51.93 -0.32 0.33 16 4 C 0.08 0.85 5.86 -3.54 -0.02 0.83 16 5 N -0.63 -8.13 2.62 -178.06 -0.47 -8.60 16 6 C 0.71 11.67 8.31 -86.91 -0.72 10.95 16 7 O -0.59 -11.44 15.82 5.29 0.08 -11.35 16 8 N -0.72 -12.25 5.44 -66.41 -0.36 -12.61 16 9 C 0.13 2.35 6.16 -5.19 -0.03 2.32 16 10 C 0.43 9.71 7.85 -10.99 -0.09 9.63 16 11 O -0.60 -15.04 15.24 5.55 0.08 -14.96 16 12 N -0.55 -13.46 5.29 -10.96 -0.06 -13.52 16 13 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 14 H 0.11 2.96 7.16 -52.49 -0.38 2.58 16 15 C 0.03 0.66 5.50 -17.46 -0.10 0.56 16 16 N -0.89 -23.70 13.05 55.50 0.72 -22.98 16 17 Si 0.93 20.33 29.55 -169.99 -5.02 15.31 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 C 0.11 1.24 5.32 -3.59 -0.02 1.22 16 22 C 0.11 1.02 0.68 -90.46 -0.06 0.96 16 23 C -0.18 -1.81 4.46 -26.64 -0.12 -1.93 16 24 C 0.07 0.63 6.70 37.22 0.25 0.88 16 25 O -0.38 -3.96 10.76 -35.23 -0.38 -4.34 16 26 C 0.07 0.53 6.70 37.21 0.25 0.77 16 27 C -0.14 -1.08 5.14 -26.64 -0.14 -1.22 16 28 O -0.37 -3.60 8.86 -35.23 -0.31 -3.91 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 1.02 5.78 -51.92 -0.30 0.72 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.41 6.68 4.99 -40.82 -0.20 6.48 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.40 9.38 7.90 -40.82 -0.32 9.06 16 38 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 1.28 7.06 -51.93 -0.37 0.91 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.08 0.90 6.06 -51.93 -0.31 0.58 16 43 H 0.05 0.50 7.83 -51.93 -0.41 0.09 16 44 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.48 7.83 -51.93 -0.41 0.08 16 46 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 48 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -31.78 379.72 -7.88 -39.66 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -7.23 Total: 15.05 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: -0.66 Total: 16.53 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.16 Total: -57.70 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.52 Total: -34.56 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.78 -7.88 -39.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346658830.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.910 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds