Wall clock time and date at job start Sat Apr 11 2020 06:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47403 * 2 1 4 4 C 1.50709 * 109.46593 * 120.00427 * 2 1 3 5 5 H 1.08002 * 119.99934 * 120.00502 * 4 2 1 6 6 C 1.37868 * 119.99742 * 299.99515 * 4 2 1 7 7 N 1.31517 * 120.00097 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 120.00426 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47077 * 89.99721 * 8 6 4 10 10 H 1.48502 * 109.47158 * 209.99976 * 8 6 4 11 11 H 1.48503 * 109.46788 * 329.99987 * 8 6 4 12 12 C 1.50706 * 109.47005 * 239.99798 * 2 1 3 13 13 O 1.21287 * 120.00016 * 240.00085 * 12 2 1 14 14 N 1.34774 * 119.99804 * 60.00358 * 12 2 1 15 15 C 1.46497 * 119.99906 * 185.03308 * 14 12 2 16 16 C 1.50702 * 113.01866 * 283.87772 * 15 14 12 17 17 N 1.34776 * 120.00144 * 336.01894 * 16 15 14 18 18 O 1.21285 * 120.00051 * 156.02555 * 16 15 14 19 19 C 1.53950 * 113.74127 * 55.53811 * 15 14 12 20 20 N 1.47582 * 86.24126 * 137.89567 * 19 15 14 21 21 C 1.34771 * 134.49184 * 155.42146 * 20 19 15 22 22 O 1.21515 * 120.00103 * 0.02562 * 21 20 19 23 23 O 1.34636 * 120.00012 * 179.97438 * 21 20 19 24 24 C 1.45203 * 117.00105 * 180.02562 * 23 21 20 25 25 C 1.52993 * 109.46983 * 60.00267 * 24 23 21 26 26 C 1.52999 * 109.47018 * 180.02562 * 24 23 21 27 27 C 1.53003 * 109.47108 * 300.00164 * 24 23 21 28 28 C 1.47811 * 90.92206 * 335.46057 * 20 19 15 29 29 H 1.09008 * 109.46741 * 60.00073 * 1 2 3 30 30 H 1.09001 * 109.47497 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47219 * 299.99769 * 1 2 3 32 32 H 0.97002 * 120.00335 * 179.97438 * 7 6 4 33 33 H 0.96995 * 119.99997 * 5.04558 * 14 12 2 34 34 H 0.97004 * 119.99577 * 354.96079 * 17 16 15 35 35 H 0.97000 * 120.00049 * 174.95134 * 17 16 15 36 36 H 1.08998 * 113.76821 * 252.25506 * 19 15 14 37 37 H 1.08994 * 113.76972 * 23.53657 * 19 15 14 38 38 H 1.08999 * 109.47463 * 59.99907 * 25 24 23 39 39 H 1.09007 * 109.47127 * 179.97438 * 25 24 23 40 40 H 1.08996 * 109.47242 * 300.00098 * 25 24 23 41 41 H 1.08995 * 109.47160 * 59.99841 * 26 24 23 42 42 H 1.08998 * 109.46991 * 179.97438 * 26 24 23 43 43 H 1.08996 * 109.47211 * 299.99815 * 26 24 23 44 44 H 1.09004 * 109.46598 * 60.00182 * 27 24 23 45 45 H 1.08998 * 109.47178 * 180.02562 * 27 24 23 46 46 H 1.09002 * 109.47127 * 300.00677 * 27 24 23 47 47 H 1.08999 * 113.66729 * 270.23383 * 28 20 19 48 48 H 1.09004 * 113.93705 * 138.88556 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7106 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2395 2.4827 7 7 2.1378 -0.8592 3.5566 8 14 0.6248 1.2790 2.6542 9 1 -0.8028 0.8727 2.6997 10 1 0.9759 1.9950 3.9069 11 1 0.8472 2.1764 1.4921 12 6 2.0323 -0.7105 -1.2305 13 8 2.7296 -1.6966 -1.1192 14 7 1.7068 -0.2500 -2.4546 15 6 2.1016 -1.0012 -3.6487 16 6 3.5622 -0.8464 -3.9861 17 7 4.2398 0.2396 -3.5644 18 8 4.1279 -1.6991 -4.6372 19 6 1.6166 -2.4624 -3.6502 20 7 1.2863 -2.2493 -5.0727 21 6 1.1527 -3.0578 -6.1426 22 8 1.3197 -4.2555 -6.0238 23 8 0.8331 -2.5385 -7.3430 24 6 0.7052 -3.4686 -8.4507 25 6 -0.3931 -4.4866 -8.1377 26 6 0.3414 -2.7000 -9.7226 27 6 2.0334 -4.1992 -8.6592 28 6 1.1624 -0.7932 -4.8505 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.9038 -0.5276 4.4376 33 1 1.2112 0.5789 -2.5449 34 1 3.7719 0.9559 -3.1073 35 1 5.1954 0.3049 -3.7179 36 1 2.4123 -3.1895 -3.4881 37 1 0.7459 -2.6369 -3.0183 38 1 -1.3393 -3.9662 -7.9891 39 1 -0.4894 -5.1846 -8.9694 40 1 -0.1336 -5.0341 -7.2316 41 1 1.1242 -1.9750 -9.9455 42 1 0.2459 -3.3981 -10.5542 43 1 -0.6046 -2.1793 -9.5744 44 1 2.2929 -4.7467 -7.7531 45 1 1.9375 -4.8970 -9.4910 46 1 2.8159 -3.4739 -8.8821 47 1 0.1569 -0.4770 -4.5727 48 1 1.5946 -0.1861 -5.6459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362493627.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:38 Heat of formation + Delta-G solvation = -137.304998 kcal Electronic energy + Delta-G solvation = -31449.661108 eV Core-core repulsion = 27119.485852 eV Total energy + Delta-G solvation = -4330.175256 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.60872 -41.45513 -40.10329 -39.11660 -37.62880 -35.74663 -35.51322 -34.99516 -34.22018 -33.10131 -30.17392 -28.38793 -28.29991 -27.69017 -27.02956 -25.77740 -24.55589 -22.85837 -21.52681 -20.67787 -20.32793 -19.21077 -18.96372 -18.60262 -18.16476 -17.93148 -17.51434 -17.27210 -16.71365 -16.38449 -16.00273 -15.92610 -15.70480 -15.34156 -15.16368 -14.98852 -14.63737 -14.48357 -14.28900 -14.27873 -13.90314 -13.66179 -13.38464 -13.33663 -13.12435 -12.92949 -12.87395 -12.76606 -12.51986 -12.49234 -12.35329 -12.30744 -12.06140 -11.68696 -11.42267 -11.39905 -11.20959 -11.13843 -10.75041 -10.72535 -10.47072 -10.32123 -9.94516 -8.20625 -6.29141 0.74455 1.30914 1.40356 1.46638 1.58237 1.65397 1.80092 2.04360 2.29433 2.41024 2.65596 3.04352 3.14327 3.56260 3.74709 3.76501 3.79010 3.93333 4.00520 4.14516 4.28924 4.32299 4.46416 4.52355 4.57031 4.58986 4.60360 4.71122 4.74815 4.79897 4.83696 4.87792 4.88507 5.12365 5.12428 5.25400 5.26950 5.32806 5.42485 5.56210 5.61035 5.77429 6.27990 6.31794 6.43877 6.67662 6.89548 7.16051 7.18329 7.31861 7.47534 8.97207 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021079 B = 0.002711 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.986145 B =10326.446538 C =10678.461972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.003 4.003 3 H 0.084 0.916 4 C -0.519 4.519 5 H 0.026 0.974 6 C 0.001 3.999 7 N -0.959 5.959 8 Si 0.961 3.039 9 H -0.266 1.266 10 H -0.310 1.310 11 H -0.215 1.215 12 C 0.534 3.466 13 O -0.566 6.566 14 N -0.701 5.701 15 C 0.119 3.881 16 C 0.533 3.467 17 N -0.824 5.824 18 O -0.576 6.576 19 C 0.152 3.848 20 N -0.630 5.630 21 C 0.676 3.324 22 O -0.596 6.596 23 O -0.359 6.359 24 C 0.122 3.878 25 C -0.179 4.179 26 C -0.131 4.131 27 C -0.181 4.181 28 C 0.141 3.859 29 H 0.099 0.901 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.264 0.736 33 H 0.431 0.569 34 H 0.417 0.583 35 H 0.410 0.590 36 H 0.057 0.943 37 H 0.110 0.890 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.075 0.925 44 H 0.051 0.949 45 H 0.095 0.905 46 H 0.057 0.943 47 H 0.152 0.848 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.618 9.439 -26.903 29.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 H 0.101 0.899 4 C -0.557 4.557 5 H 0.045 0.955 6 C -0.195 4.195 7 N -0.599 5.599 8 Si 0.786 3.214 9 H -0.192 1.192 10 H -0.238 1.238 11 H -0.137 1.137 12 C 0.323 3.677 13 O -0.441 6.441 14 N -0.361 5.361 15 C 0.027 3.973 16 C 0.316 3.684 17 N -0.387 5.387 18 O -0.454 6.454 19 C 0.029 3.971 20 N -0.373 5.373 21 C 0.433 3.567 22 O -0.488 6.488 23 O -0.274 6.274 24 C 0.086 3.914 25 C -0.236 4.236 26 C -0.188 4.188 27 C -0.238 4.238 28 C 0.019 3.981 29 H 0.117 0.883 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.273 0.727 34 H 0.248 0.752 35 H 0.241 0.759 36 H 0.076 0.924 37 H 0.128 0.872 38 H 0.087 0.913 39 H 0.112 0.888 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.122 0.878 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.114 0.886 46 H 0.076 0.924 47 H 0.170 0.830 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.900 7.582 -27.311 29.425 hybrid contribution 0.324 0.171 1.406 1.453 sum -7.576 7.753 -25.905 28.082 Atomic orbital electron populations 1.22074 0.94186 1.01760 1.02089 1.19268 0.95469 0.97920 0.89793 0.89868 1.21143 1.31351 1.12714 0.90522 0.95531 1.26101 0.97591 1.00901 0.94882 1.70108 1.47947 1.43041 0.98790 0.85706 0.78405 0.79023 0.78276 1.19165 1.23819 1.13698 1.21218 0.77922 0.83740 0.84795 1.90683 1.38091 1.28503 1.86842 1.45727 1.59992 1.28241 1.02132 1.22009 0.92242 0.94162 0.88909 1.20196 0.88695 0.81536 0.78007 1.43525 1.13244 1.21395 1.60576 1.90769 1.70213 1.43224 1.41190 1.23169 0.99887 0.95594 0.78411 1.48265 1.72342 1.09959 1.06769 1.17459 0.75775 0.82875 0.80603 1.90897 1.57553 1.14997 1.85306 1.86290 1.82614 1.42290 1.16176 1.22503 0.96150 0.88934 0.83801 1.22466 0.97804 0.99505 1.03831 1.21865 1.03023 1.01124 0.92795 1.22483 0.96431 1.01396 1.03531 1.23730 1.00642 0.80572 0.93142 0.88268 0.93808 0.93956 0.92683 0.72726 0.75189 0.75861 0.92440 0.87229 0.91335 0.88807 0.92736 0.91260 0.87776 0.90568 0.93002 0.88637 0.92365 0.83037 0.86444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 8.57 71.98 0.62 -3.80 16 2 C 0.00 -0.11 2.23 -12.28 -0.03 -0.14 16 3 H 0.08 2.72 7.20 -2.39 -0.02 2.71 16 4 C -0.52 -28.54 8.96 25.60 0.23 -28.31 16 5 H 0.03 1.77 7.00 -2.91 -0.02 1.75 16 6 C 0.00 0.06 5.45 84.65 0.46 0.52 16 7 N -0.96 -59.89 13.96 21.44 0.30 -59.59 16 8 Si 0.96 39.54 24.37 68.60 1.67 41.21 16 9 H -0.27 -10.35 6.87 99.48 0.68 -9.66 16 10 H -0.31 -13.36 7.11 99.48 0.71 -12.66 16 11 H -0.21 -6.99 6.53 99.48 0.65 -6.34 16 12 C 0.53 18.64 6.82 87.66 0.60 19.24 16 13 O -0.57 -26.69 14.51 -3.05 -0.04 -26.73 16 14 N -0.70 -14.49 4.27 -430.16 -1.84 -16.33 16 15 C 0.12 2.80 1.14 4.49 0.01 2.81 16 16 C 0.53 15.22 7.10 87.66 0.62 15.84 16 17 N -0.82 -16.81 8.79 -173.53 -1.52 -18.33 16 18 O -0.58 -22.05 16.95 -3.05 -0.05 -22.11 16 19 C 0.15 4.73 6.66 86.48 0.58 5.30 16 20 N -0.63 -17.28 3.34 -963.47 -3.21 -20.50 16 21 C 0.68 21.25 8.23 129.79 1.07 22.32 16 22 O -0.60 -22.70 12.61 19.79 0.25 -22.45 16 23 O -0.36 -9.08 9.88 -55.45 -0.55 -9.63 16 24 C 0.12 2.47 1.13 -10.79 -0.01 2.46 16 25 C -0.18 -3.51 8.37 71.98 0.60 -2.91 16 26 C -0.13 -1.55 8.85 71.98 0.64 -0.91 16 27 C -0.18 -4.01 8.37 71.98 0.60 -3.41 16 28 C 0.14 2.24 8.21 86.43 0.71 2.95 16 29 H 0.10 1.80 7.69 -2.38 -0.02 1.78 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 1.39 3.27 -2.39 -0.01 1.38 16 32 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 33 H 0.43 4.35 8.35 -92.71 -0.77 3.58 16 34 H 0.42 6.01 8.15 -92.71 -0.76 5.26 16 35 H 0.41 7.69 8.93 -92.71 -0.83 6.87 16 36 H 0.06 2.31 7.83 -2.39 -0.02 2.29 16 37 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.05 1.48 5.88 -2.39 -0.01 1.46 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.05 1.56 5.88 -2.38 -0.01 1.55 16 45 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.15 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.12 1.42 8.09 -2.38 -0.02 1.40 16 Total: -1.00 -93.50 387.26 0.28 -93.22 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: -1.41 Total: 29.28 kcal Atomic # 6 Polarization: 25.27 SS G_CDS: 6.69 Total: 31.96 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -6.28 Total: -114.74 kcal Atomic # 8 Polarization: -80.53 SS G_CDS: -0.39 Total: -80.92 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 1.67 Total: 41.21 kcal Total: -93.50 0.28 -93.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362493627.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.086 kcal (2) G-P(sol) polarization free energy of solvation -93.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds