Wall clock time and date at job start Sat Apr 11 2020 06:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.46745 * 2 1 4 4 O 1.42894 * 109.47240 * 120.00155 * 2 1 3 5 5 C 1.52995 * 109.47239 * 240.00139 * 2 1 3 6 6 H 1.09003 * 109.47408 * 300.00173 * 5 2 1 7 7 N 1.46509 * 109.47156 * 59.99685 * 5 2 1 8 8 C 1.34770 * 120.00092 * 274.99977 * 7 5 2 9 9 O 1.21281 * 120.00094 * 0.02562 * 8 7 5 10 10 C 1.50698 * 120.00034 * 180.02562 * 8 7 5 11 11 C 1.54267 * 110.02963 * 297.90751 * 10 8 7 12 12 C 1.54970 * 104.15980 * 217.13385 * 11 10 8 13 13 C 1.54892 * 102.77286 * 37.89322 * 12 11 10 14 14 C 1.53881 * 110.03308 * 180.69637 * 10 8 7 15 15 C 1.50698 * 109.47490 * 179.97438 * 5 2 1 16 16 O 1.21283 * 120.00472 * 240.00297 * 15 5 2 17 17 N 1.34777 * 119.99538 * 59.99635 * 15 5 2 18 18 C 1.46499 * 119.99665 * 179.72653 * 17 15 5 19 19 C 1.50703 * 109.47138 * 180.28062 * 18 17 15 20 20 O 1.21293 * 120.00086 * 359.97438 * 19 18 17 21 21 N 1.34775 * 120.00069 * 180.02562 * 19 18 17 22 22 C 1.37097 * 120.00084 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00027 * 359.97438 * 22 21 19 24 24 C 1.38954 * 119.99944 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00276 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99680 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47135 * 90.00298 * 26 24 22 28 28 H 1.48500 * 109.46751 * 210.00274 * 26 24 22 29 29 H 1.48499 * 109.47283 * 330.00462 * 26 24 22 30 30 H 1.09009 * 109.47241 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47042 * 299.99950 * 1 2 3 32 32 H 1.08994 * 109.47484 * 60.00292 * 1 2 3 33 33 H 0.96702 * 114.00242 * 59.99560 * 4 2 1 34 34 H 0.96996 * 119.99554 * 95.00338 * 7 5 2 35 35 H 1.08996 * 110.01975 * 59.29672 * 10 8 7 36 36 H 1.08996 * 110.49002 * 335.78189 * 11 10 8 37 37 H 1.08998 * 110.48512 * 98.43117 * 11 10 8 38 38 H 1.08993 * 110.72379 * 279.57399 * 12 11 10 39 39 H 1.09006 * 110.92024 * 156.29737 * 12 11 10 40 40 H 1.09006 * 110.47919 * 203.39883 * 13 12 11 41 41 H 1.08999 * 110.59958 * 80.82004 * 13 12 11 42 42 H 1.09003 * 110.02451 * 238.56807 * 14 10 8 43 43 H 1.09001 * 110.02902 * 359.97438 * 14 10 8 44 44 H 0.97001 * 120.00485 * 0.02562 * 17 15 5 45 45 H 1.09009 * 109.47454 * 300.27637 * 18 17 15 46 46 H 1.08998 * 109.47492 * 60.27932 * 18 17 15 47 47 H 0.97002 * 120.00050 * 359.97438 * 21 19 18 48 48 H 0.96997 * 119.99888 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2492 6 1 1.6767 -1.7489 -1.2493 7 7 1.5516 -0.0306 -2.4454 8 6 0.3297 -0.3164 -2.9369 9 8 -0.3658 -1.1451 -2.3887 10 6 -0.1724 0.3935 -4.1677 11 6 -0.2791 1.9085 -3.8972 12 6 -1.5541 2.3417 -4.6642 13 6 -2.5103 1.1433 -4.4434 14 6 -1.5904 -0.0929 -4.5152 15 6 3.5470 -0.7207 -1.2496 16 8 4.1531 -0.1954 -2.1594 17 7 4.2212 -1.3039 -0.2388 18 6 5.6862 -1.3086 -0.2421 19 6 6.1890 -2.0236 0.9856 20 8 5.4012 -2.4834 1.7849 21 7 7.5142 -2.1510 1.1958 22 6 7.9716 -2.8010 2.3129 23 1 7.2701 -3.2104 3.0247 24 6 9.3378 -2.9328 2.5293 25 7 10.1915 -2.4342 1.6636 26 14 9.9611 -3.8178 4.0519 27 1 10.1205 -5.2637 3.7535 28 1 11.2721 -3.2477 4.4538 29 1 8.9861 -3.6453 5.1586 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8899 33 1 1.7210 -1.5952 1.2329 34 1 2.1077 0.6324 -2.8837 35 1 0.5009 0.2103 -5.0050 36 1 -0.3931 2.0985 -2.8300 37 1 0.5963 2.4282 -4.2868 38 1 -1.3399 2.4748 -5.7245 39 1 -1.9732 3.2537 -4.2389 40 1 -3.2625 1.1054 -5.2314 41 1 -2.9868 1.2080 -3.4653 42 1 -1.6052 -0.5115 -5.5215 43 1 -1.9151 -0.8427 -3.7939 44 1 3.7366 -1.7243 0.4888 45 1 6.0459 -1.8217 -1.1341 46 1 6.0529 -0.2822 -0.2406 47 1 8.1443 -1.7830 0.5567 48 1 11.1452 -2.5260 1.8149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467837032.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:41 Heat of formation + Delta-G solvation = -175.805110 kcal Electronic energy + Delta-G solvation = -30353.020939 eV Core-core repulsion = 26021.176194 eV Total energy + Delta-G solvation = -4331.844746 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.02754 -39.68617 -38.30311 -37.63497 -37.11306 -34.89438 -34.32955 -33.66235 -31.40379 -31.25126 -29.60725 -29.06462 -28.58180 -26.58368 -24.41341 -22.71870 -21.83783 -21.06792 -20.56688 -19.90056 -19.58399 -18.27068 -17.96641 -17.32997 -16.98075 -16.48412 -16.04174 -15.79715 -15.31224 -15.20646 -15.16883 -15.10694 -14.55161 -14.26142 -14.18001 -13.84023 -13.66178 -13.63240 -13.34134 -12.84414 -12.52369 -12.23281 -12.11925 -12.04330 -11.94563 -11.71447 -11.63410 -11.49773 -11.47432 -11.36619 -11.15672 -11.12660 -10.86281 -10.61802 -10.45952 -10.32147 -9.99527 -9.93331 -9.63602 -9.24410 -8.86373 -8.63364 -8.10294 -6.51763 -3.93608 2.32405 2.56256 2.65170 3.11700 3.21982 3.26832 3.37974 3.73541 4.04848 4.10270 4.13228 4.20528 4.35962 4.51936 4.63341 4.79488 4.83277 4.88240 4.98352 5.06031 5.06514 5.11967 5.16439 5.21254 5.27840 5.29328 5.44742 5.55667 5.60609 5.71356 5.75302 5.80681 5.83535 5.89363 5.91701 5.96605 6.04818 6.06262 6.14305 6.58701 7.21927 7.42016 7.45992 7.68557 7.91415 7.94187 8.28403 8.45017 9.04482 9.38764 9.86696 10.65143 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.030153 B = 0.002013 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.368129 B =13908.999718 C =14393.006877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.098 3.902 3 H 0.103 0.897 4 O -0.545 6.545 5 C 0.096 3.904 6 H 0.116 0.884 7 N -0.705 5.705 8 C 0.522 3.478 9 O -0.534 6.534 10 C -0.113 4.113 11 C -0.117 4.117 12 C -0.124 4.124 13 C -0.124 4.124 14 C -0.119 4.119 15 C 0.510 3.490 16 O -0.551 6.551 17 N -0.687 5.687 18 C 0.107 3.893 19 C 0.429 3.571 20 O -0.593 6.593 21 N -0.550 5.550 22 C -0.304 4.304 23 H 0.106 0.894 24 C 0.025 3.975 25 N -0.895 5.895 26 Si 0.933 3.067 27 H -0.277 1.277 28 H -0.283 1.283 29 H -0.268 1.268 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.380 0.620 34 H 0.412 0.588 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.416 0.584 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.395 0.605 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.181 8.779 -12.705 26.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.038 3.962 3 H 0.121 0.879 4 O -0.350 6.350 5 C -0.013 4.013 6 H 0.133 0.867 7 N -0.360 5.360 8 C 0.309 3.691 9 O -0.411 6.411 10 C -0.134 4.134 11 C -0.155 4.155 12 C -0.161 4.161 13 C -0.162 4.162 14 C -0.157 4.157 15 C 0.294 3.706 16 O -0.430 6.430 17 N -0.343 5.343 18 C -0.020 4.020 19 C 0.214 3.786 20 O -0.479 6.479 21 N -0.185 5.185 22 C -0.433 4.433 23 H 0.124 0.876 24 C -0.178 4.178 25 N -0.535 5.535 26 Si 0.760 3.240 27 H -0.203 1.203 28 H -0.208 1.208 29 H -0.193 1.193 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.228 0.772 34 H 0.249 0.751 35 H 0.119 0.881 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.258 0.742 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.229 0.771 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.242 8.795 -12.241 26.046 hybrid contribution 0.811 -0.621 0.219 1.045 sum -20.431 8.173 -12.022 25.075 Atomic orbital electron populations 1.22515 0.94637 1.03703 1.02234 1.22224 0.94291 0.96818 0.82915 0.87890 1.86731 1.76519 1.29541 1.42191 1.21634 0.92067 1.00112 0.87532 0.86675 1.45625 1.17948 1.43708 1.28710 1.20594 0.80654 0.82363 0.85462 1.90683 1.56042 1.33898 1.60428 1.21959 0.99334 0.96186 0.95910 1.22399 0.99104 0.92743 1.01235 1.22511 0.95093 0.98145 1.00383 1.22365 0.97669 0.94300 1.01868 1.22173 0.92032 0.98885 1.02582 1.20238 0.88977 0.79002 0.82339 1.90680 1.69705 1.46282 1.36284 1.45736 1.07035 1.56659 1.24825 1.20997 0.80504 1.01800 0.98724 1.19698 0.83818 0.86602 0.88485 1.90507 1.55051 1.54236 1.48096 1.41787 1.04672 1.49281 1.22721 1.19733 0.91379 1.32006 1.00225 0.87638 1.25329 0.95718 0.97602 0.99125 1.69612 1.03102 1.44870 1.35957 0.85808 0.78120 0.79121 0.80956 1.20290 1.20816 1.19296 0.91113 0.92014 0.91679 0.77194 0.75055 0.88123 0.91059 0.90603 0.91199 0.91277 0.91527 0.91511 0.91411 0.89084 0.74222 0.89807 0.89757 0.77086 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 8.06 37.16 0.30 -1.42 16 2 C 0.10 1.06 3.34 -26.73 -0.09 0.98 16 3 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 4 O -0.55 -6.58 10.97 -35.23 -0.39 -6.97 16 5 C 0.10 1.10 2.50 -69.08 -0.17 0.93 16 6 H 0.12 1.33 7.58 -51.93 -0.39 0.93 16 7 N -0.71 -7.08 4.78 -54.93 -0.26 -7.34 16 8 C 0.52 5.21 5.36 -10.99 -0.06 5.15 16 9 O -0.53 -6.65 12.33 5.56 0.07 -6.59 16 10 C -0.11 -0.83 3.30 -90.65 -0.30 -1.13 16 11 C -0.12 -0.71 6.30 -25.03 -0.16 -0.86 16 12 C -0.12 -0.67 6.91 -24.69 -0.17 -0.84 16 13 C -0.12 -0.77 6.83 -25.08 -0.17 -0.94 16 14 C -0.12 -0.88 6.40 -25.62 -0.16 -1.05 16 15 C 0.51 7.52 7.22 -10.99 -0.08 7.44 16 16 O -0.55 -9.28 15.84 5.55 0.09 -9.19 16 17 N -0.69 -11.11 5.17 -61.47 -0.32 -11.42 16 18 C 0.11 1.95 6.15 -5.19 -0.03 1.92 16 19 C 0.43 9.75 7.85 -10.98 -0.09 9.66 16 20 O -0.59 -15.02 15.24 5.55 0.08 -14.94 16 21 N -0.55 -13.55 5.29 -10.96 -0.06 -13.61 16 22 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 23 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 25 N -0.90 -23.82 13.05 55.50 0.72 -23.10 16 26 Si 0.93 20.53 29.55 -169.99 -5.02 15.50 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 29 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 30 H 0.07 0.74 7.53 -51.92 -0.39 0.35 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.65 5.77 -51.93 -0.30 0.35 16 33 H 0.38 3.45 8.85 45.56 0.40 3.86 16 34 H 0.41 3.90 7.77 -40.82 -0.32 3.59 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.47 7.85 -51.93 -0.41 0.07 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.09 0.86 6.39 -51.93 -0.33 0.53 16 44 H 0.42 6.72 5.28 -40.82 -0.22 6.50 16 45 H 0.08 1.45 8.14 -51.92 -0.42 1.02 16 46 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 47 H 0.40 9.37 7.90 -40.82 -0.32 9.04 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 388.87 15.07 5.86 5.86 Total: -1.00 -32.18 388.87 -7.08 -39.26 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: -6.44 Total: 20.50 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: -1.42 Total: 12.02 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.09 Total: -55.47 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -0.15 Total: -37.68 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.18 -7.08 -39.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467837032.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.544 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds