Wall clock time and date at job start Sat Apr 11 2020 06:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.46745 * 2 1 4 4 O 1.42894 * 109.47240 * 120.00155 * 2 1 3 5 5 C 1.52995 * 109.47239 * 240.00139 * 2 1 3 6 6 H 1.09003 * 109.47408 * 300.00173 * 5 2 1 7 7 N 1.46509 * 109.47156 * 59.99685 * 5 2 1 8 8 C 1.34770 * 120.00092 * 274.99977 * 7 5 2 9 9 O 1.21281 * 120.00094 * 0.02562 * 8 7 5 10 10 C 1.50698 * 120.00034 * 180.02562 * 8 7 5 11 11 C 1.54267 * 110.02963 * 297.90751 * 10 8 7 12 12 C 1.54970 * 104.15980 * 217.13385 * 11 10 8 13 13 C 1.54892 * 102.77286 * 37.89322 * 12 11 10 14 14 C 1.53881 * 110.03308 * 180.69637 * 10 8 7 15 15 C 1.50698 * 109.47490 * 179.97438 * 5 2 1 16 16 O 1.21283 * 120.00472 * 240.00297 * 15 5 2 17 17 N 1.34777 * 119.99538 * 59.99635 * 15 5 2 18 18 C 1.46499 * 119.99665 * 179.72653 * 17 15 5 19 19 C 1.50703 * 109.47138 * 180.28062 * 18 17 15 20 20 O 1.21293 * 120.00086 * 359.97438 * 19 18 17 21 21 N 1.34775 * 120.00069 * 180.02562 * 19 18 17 22 22 C 1.37097 * 120.00084 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00027 * 359.97438 * 22 21 19 24 24 C 1.38954 * 119.99944 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00276 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99680 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47135 * 90.00298 * 26 24 22 28 28 H 1.48500 * 109.46751 * 210.00274 * 26 24 22 29 29 H 1.48499 * 109.47283 * 330.00462 * 26 24 22 30 30 H 1.09009 * 109.47241 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47042 * 299.99950 * 1 2 3 32 32 H 1.08994 * 109.47484 * 60.00292 * 1 2 3 33 33 H 0.96702 * 114.00242 * 59.99560 * 4 2 1 34 34 H 0.96996 * 119.99554 * 95.00338 * 7 5 2 35 35 H 1.08996 * 110.01975 * 59.29672 * 10 8 7 36 36 H 1.08996 * 110.49002 * 335.78189 * 11 10 8 37 37 H 1.08998 * 110.48512 * 98.43117 * 11 10 8 38 38 H 1.08993 * 110.72379 * 279.57399 * 12 11 10 39 39 H 1.09006 * 110.92024 * 156.29737 * 12 11 10 40 40 H 1.09006 * 110.47919 * 203.39883 * 13 12 11 41 41 H 1.08999 * 110.59958 * 80.82004 * 13 12 11 42 42 H 1.09003 * 110.02451 * 238.56807 * 14 10 8 43 43 H 1.09001 * 110.02902 * 359.97438 * 14 10 8 44 44 H 0.97001 * 120.00485 * 0.02562 * 17 15 5 45 45 H 1.09009 * 109.47454 * 300.27637 * 18 17 15 46 46 H 1.08998 * 109.47492 * 60.27932 * 18 17 15 47 47 H 0.97002 * 120.00050 * 359.97438 * 21 19 18 48 48 H 0.96997 * 119.99888 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2492 6 1 1.6767 -1.7489 -1.2493 7 7 1.5516 -0.0306 -2.4454 8 6 0.3297 -0.3164 -2.9369 9 8 -0.3658 -1.1451 -2.3887 10 6 -0.1724 0.3935 -4.1677 11 6 -0.2791 1.9085 -3.8972 12 6 -1.5541 2.3417 -4.6642 13 6 -2.5103 1.1433 -4.4434 14 6 -1.5904 -0.0929 -4.5152 15 6 3.5470 -0.7207 -1.2496 16 8 4.1531 -0.1954 -2.1594 17 7 4.2212 -1.3039 -0.2388 18 6 5.6862 -1.3086 -0.2421 19 6 6.1890 -2.0236 0.9856 20 8 5.4012 -2.4834 1.7849 21 7 7.5142 -2.1510 1.1958 22 6 7.9716 -2.8010 2.3129 23 1 7.2701 -3.2104 3.0247 24 6 9.3378 -2.9328 2.5293 25 7 10.1915 -2.4342 1.6636 26 14 9.9611 -3.8178 4.0519 27 1 10.1205 -5.2637 3.7535 28 1 11.2721 -3.2477 4.4538 29 1 8.9861 -3.6453 5.1586 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8899 33 1 1.7210 -1.5952 1.2329 34 1 2.1077 0.6324 -2.8837 35 1 0.5009 0.2103 -5.0050 36 1 -0.3931 2.0985 -2.8300 37 1 0.5963 2.4282 -4.2868 38 1 -1.3399 2.4748 -5.7245 39 1 -1.9732 3.2537 -4.2389 40 1 -3.2625 1.1054 -5.2314 41 1 -2.9868 1.2080 -3.4653 42 1 -1.6052 -0.5115 -5.5215 43 1 -1.9151 -0.8427 -3.7939 44 1 3.7366 -1.7243 0.4888 45 1 6.0459 -1.8217 -1.1341 46 1 6.0529 -0.2822 -0.2406 47 1 8.1443 -1.7830 0.5567 48 1 11.1452 -2.5260 1.8149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467837032.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:40 Heat of formation + Delta-G solvation = -201.673666 kcal Electronic energy + Delta-G solvation = -30354.142684 eV Core-core repulsion = 26021.176194 eV Total energy + Delta-G solvation = -4332.966491 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.97198 -40.81665 -39.95601 -38.59817 -37.84483 -36.30490 -35.70706 -35.14632 -33.36722 -32.11223 -30.40623 -29.81725 -29.50092 -27.87160 -26.19144 -23.51013 -22.75096 -21.70946 -21.52157 -21.36501 -20.67585 -20.06832 -19.05943 -18.34154 -17.94903 -17.63772 -17.19626 -16.83585 -16.65404 -16.49067 -16.34222 -16.05948 -15.91189 -15.68183 -15.45027 -15.04945 -14.71430 -14.44816 -14.21599 -14.02560 -13.85222 -13.54357 -13.50060 -13.36146 -12.90650 -12.87670 -12.71568 -12.45050 -12.28524 -12.23158 -12.12794 -12.00975 -11.92307 -11.67674 -11.56151 -11.54570 -11.38630 -11.08130 -10.79426 -10.54337 -10.24704 -10.13221 -10.07182 -8.50597 -6.00358 1.35157 1.37874 1.42730 1.51416 1.56027 1.68367 1.91893 2.22195 2.35468 3.10566 3.16528 3.18807 3.48355 3.58630 3.65134 3.67844 3.82881 3.85312 4.14648 4.22344 4.26204 4.37558 4.41178 4.42971 4.49593 4.56109 4.59022 4.71030 4.79235 4.82896 4.94427 4.99190 5.10062 5.14032 5.21460 5.25527 5.27398 5.29294 5.39113 5.45053 5.49480 5.92248 6.39924 6.43343 6.50652 6.62811 7.01247 7.04720 7.13910 7.44989 7.95615 8.66264 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.030153 B = 0.002013 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.368129 B =13908.999718 C =14393.006877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.105 3.895 3 H 0.102 0.898 4 O -0.562 6.562 5 C 0.107 3.893 6 H 0.117 0.883 7 N -0.701 5.701 8 C 0.522 3.478 9 O -0.560 6.560 10 C -0.110 4.110 11 C -0.115 4.115 12 C -0.120 4.120 13 C -0.124 4.124 14 C -0.120 4.120 15 C 0.514 3.486 16 O -0.569 6.569 17 N -0.690 5.690 18 C 0.119 3.881 19 C 0.432 3.568 20 O -0.619 6.619 21 N -0.560 5.560 22 C -0.336 4.336 23 H 0.086 0.914 24 C -0.012 4.012 25 N -0.916 5.916 26 Si 0.996 3.004 27 H -0.270 1.270 28 H -0.272 1.272 29 H -0.271 1.271 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.391 0.609 34 H 0.417 0.583 35 H 0.115 0.885 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.417 0.583 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.399 0.601 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.603 9.542 -13.511 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.120 0.880 4 O -0.369 6.369 5 C -0.003 4.003 6 H 0.135 0.865 7 N -0.356 5.356 8 C 0.310 3.690 9 O -0.439 6.439 10 C -0.131 4.131 11 C -0.153 4.153 12 C -0.157 4.157 13 C -0.161 4.161 14 C -0.158 4.158 15 C 0.299 3.701 16 O -0.449 6.449 17 N -0.346 5.346 18 C -0.009 4.009 19 C 0.219 3.781 20 O -0.507 6.507 21 N -0.196 5.196 22 C -0.465 4.465 23 H 0.104 0.896 24 C -0.212 4.212 25 N -0.556 5.556 26 Si 0.820 3.180 27 H -0.196 1.196 28 H -0.197 1.197 29 H -0.195 1.195 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.241 0.759 34 H 0.255 0.745 35 H 0.133 0.867 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.258 0.742 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.233 0.767 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.676 9.571 -13.076 27.064 hybrid contribution 0.880 -0.858 0.429 1.302 sum -20.796 8.714 -12.647 25.852 Atomic orbital electron populations 1.22388 0.93746 1.03338 1.02435 1.22186 0.94732 0.96473 0.82153 0.88009 1.86697 1.76905 1.30604 1.42666 1.21509 0.89536 1.00629 0.88643 0.86538 1.45625 1.18114 1.43582 1.28254 1.21083 0.80119 0.81930 0.85836 1.90678 1.56675 1.35142 1.61381 1.22031 0.99390 0.96814 0.94849 1.22420 1.00147 0.91674 1.01060 1.22513 0.94337 0.97901 1.00977 1.22363 0.97859 0.94124 1.01803 1.22169 0.92317 0.98922 1.02367 1.20691 0.90134 0.77900 0.81336 1.90670 1.70482 1.46939 1.36821 1.45767 1.06140 1.57265 1.25468 1.20822 0.81824 1.01713 0.96502 1.20420 0.83024 0.85444 0.89190 1.90485 1.55619 1.55106 1.49489 1.41834 1.05465 1.49785 1.22518 1.19729 0.91816 1.33739 1.01216 0.89594 1.26118 0.95400 0.97888 1.01802 1.69675 1.03496 1.45278 1.37167 0.84876 0.77638 0.78183 0.77338 1.19585 1.19680 1.19518 0.91745 0.91443 0.91738 0.75893 0.74506 0.86732 0.91765 0.89224 0.90132 0.90601 0.90520 0.92380 0.90458 0.91423 0.74151 0.88538 0.88679 0.76735 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 8.06 71.98 0.58 -2.49 16 2 C 0.11 2.19 3.34 30.59 0.10 2.29 16 3 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 4 O -0.56 -13.24 10.97 -148.98 -1.63 -14.88 16 5 C 0.11 2.36 2.50 44.24 0.11 2.47 16 6 H 0.12 2.61 7.58 -2.39 -0.02 2.59 16 7 N -0.70 -13.26 4.78 -446.09 -2.13 -15.39 16 8 C 0.52 9.91 5.36 87.66 0.47 10.38 16 9 O -0.56 -13.76 12.33 -3.03 -0.04 -13.80 16 10 C -0.11 -1.45 3.30 -10.81 -0.04 -1.49 16 11 C -0.12 -1.16 6.30 31.70 0.20 -0.96 16 12 C -0.12 -1.03 6.91 31.91 0.22 -0.81 16 13 C -0.12 -1.35 6.83 31.67 0.22 -1.13 16 14 C -0.12 -1.65 6.40 31.32 0.20 -1.45 16 15 C 0.51 14.63 7.22 87.66 0.63 15.26 16 16 O -0.57 -18.45 15.84 -3.04 -0.05 -18.50 16 17 N -0.69 -21.85 5.17 -466.78 -2.41 -24.27 16 18 C 0.12 4.24 6.15 85.63 0.53 4.77 16 19 C 0.43 19.77 7.85 87.66 0.69 20.45 16 20 O -0.62 -31.74 15.24 -3.07 -0.05 -31.79 16 21 N -0.56 -27.94 5.29 -306.98 -1.62 -29.56 16 22 C -0.34 -18.44 9.68 84.04 0.81 -17.63 16 23 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 24 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 25 N -0.92 -48.47 13.05 21.66 0.28 -48.19 16 26 Si 1.00 41.78 29.55 68.60 2.03 43.81 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 29 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 30 H 0.06 1.32 7.53 -2.38 -0.02 1.30 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.24 5.77 -2.39 -0.01 1.22 16 33 H 0.39 6.97 8.85 -74.06 -0.66 6.32 16 34 H 0.42 7.27 7.77 -92.71 -0.72 6.55 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 0.75 7.85 -2.39 -0.02 0.73 16 37 H 0.09 0.67 8.14 -2.39 -0.02 0.66 16 38 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 1.28 6.39 -2.39 -0.02 1.26 16 44 H 0.42 13.31 5.28 -92.71 -0.49 12.83 16 45 H 0.10 3.22 8.14 -2.38 -0.02 3.21 16 46 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 47 H 0.40 19.05 7.90 -92.71 -0.73 18.32 16 48 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -68.08 388.87 -2.00 -70.08 By element: Atomic # 1 Polarization: 54.51 SS G_CDS: -1.57 Total: 52.95 kcal Atomic # 6 Polarization: 24.34 SS G_CDS: 5.19 Total: 29.54 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -5.88 Total: -117.41 kcal Atomic # 8 Polarization: -77.19 SS G_CDS: -1.77 Total: -78.96 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -68.08 -2.00 -70.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467837032.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.594 kcal (2) G-P(sol) polarization free energy of solvation -68.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds