Wall clock time and date at job start Sat Apr 11 2020 06:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46954 * 2 1 4 4 O 1.42906 * 109.46616 * 119.99874 * 2 1 3 5 5 C 1.53002 * 109.47210 * 239.99390 * 2 1 3 6 6 H 1.08995 * 109.47298 * 305.94105 * 5 2 1 7 7 N 1.46499 * 109.47180 * 185.94213 * 5 2 1 8 8 C 1.34773 * 120.00175 * 84.99836 * 7 5 2 9 9 O 1.21280 * 120.00136 * 0.02562 * 8 7 5 10 10 C 1.50698 * 120.00087 * 179.97438 * 8 7 5 11 11 C 1.55237 * 110.58249 * 294.88139 * 10 8 7 12 12 C 1.54896 * 102.58420 * 203.33709 * 11 10 8 13 13 C 1.54261 * 104.31602 * 37.93209 * 12 11 10 14 14 C 1.53881 * 106.59664 * 336.32261 * 13 12 11 15 15 C 1.50696 * 109.46665 * 65.94170 * 5 2 1 16 16 O 1.21286 * 120.00068 * 93.32526 * 15 5 2 17 17 N 1.34775 * 120.00052 * 273.32418 * 15 5 2 18 18 C 1.46501 * 120.00152 * 184.90613 * 17 15 5 19 19 C 1.50699 * 109.47513 * 180.02562 * 18 17 15 20 20 O 1.21296 * 119.99779 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00027 * 180.02562 * 19 18 17 22 22 C 1.37102 * 119.99709 * 179.97438 * 21 19 18 23 23 H 1.08001 * 119.99744 * 359.97438 * 22 21 19 24 24 C 1.38946 * 119.99660 * 179.97438 * 22 21 19 25 25 N 1.31403 * 120.00258 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99529 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.46969 * 60.00755 * 26 24 22 28 28 H 1.48504 * 109.46699 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47472 * 300.00182 * 26 24 22 30 30 H 1.09006 * 109.47270 * 174.54846 * 1 2 3 31 31 H 1.08992 * 109.47407 * 294.54536 * 1 2 3 32 32 H 1.08999 * 109.46690 * 54.55176 * 1 2 3 33 33 H 0.96699 * 113.99538 * 180.02562 * 4 2 1 34 34 H 0.97006 * 119.99780 * 265.00536 * 7 5 2 35 35 H 1.09004 * 110.42892 * 57.46575 * 10 8 7 36 36 H 1.08998 * 110.89812 * 85.04656 * 11 10 8 37 37 H 1.08999 * 110.76644 * 321.56680 * 11 10 8 38 38 H 1.09003 * 110.48670 * 279.18472 * 12 11 10 39 39 H 1.09004 * 110.48002 * 156.67563 * 12 11 10 40 40 H 1.08999 * 110.03489 * 95.60424 * 13 12 11 41 41 H 1.08998 * 110.03269 * 216.99487 * 13 12 11 42 42 H 1.09001 * 110.02923 * 119.28587 * 14 13 12 43 43 H 1.09004 * 110.03244 * 240.66917 * 14 13 12 44 44 H 0.96994 * 120.00275 * 4.90748 * 17 15 5 45 45 H 1.09009 * 109.47234 * 300.00234 * 18 17 15 46 46 H 1.09000 * 109.47491 * 59.99496 * 18 17 15 47 47 H 0.96996 * 120.00090 * 359.97438 * 21 19 18 48 48 H 0.97004 * 120.00382 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 2.0400 -0.7214 -1.2492 6 1 1.5925 -1.7137 -1.3039 7 7 3.4980 -0.8464 -1.1798 8 6 4.0551 -1.8777 -0.5145 9 8 3.3493 -2.7024 0.0264 10 6 5.5548 -2.0066 -0.4436 11 6 6.1480 -2.2616 -1.8554 12 6 7.4987 -2.9488 -1.5348 13 6 7.1874 -3.8573 -0.3277 14 6 5.9515 -3.2582 0.3662 15 6 1.6614 0.0688 -2.4752 16 8 2.4387 0.8748 -2.9412 17 7 0.4590 -0.1202 -3.0539 18 6 0.1322 0.5673 -4.3056 19 6 -1.2608 0.1886 -4.7381 20 8 -1.9161 -0.5805 -4.0670 21 7 -1.7781 0.7035 -5.8712 22 6 -3.0452 0.3585 -6.2649 23 1 -3.6286 -0.3263 -5.6673 24 6 -3.5787 0.8898 -7.4326 25 7 -2.8686 1.7226 -8.1599 26 14 -5.3049 0.4191 -7.9694 27 1 -6.2757 0.8165 -6.9183 28 1 -5.6358 1.1158 -9.2384 29 1 -5.3752 -1.0493 -8.1785 30 1 -0.3634 -1.0231 -0.0976 31 1 -0.3634 0.4269 0.9347 32 1 -0.3633 0.5960 -0.8372 33 1 2.9702 -0.7115 1.2332 34 1 4.0625 -0.1869 -1.6127 35 1 5.9932 -1.1117 -0.0019 36 1 6.3084 -1.3226 -2.3851 37 1 5.5036 -2.9260 -2.4310 38 1 8.2510 -2.2060 -1.2694 39 1 7.8346 -3.5442 -2.3839 40 1 6.9703 -4.8696 -0.6684 41 1 8.0336 -3.8682 0.3594 42 1 5.1346 -3.9799 0.3622 43 1 6.1973 -2.9786 1.3907 44 1 -0.1902 -0.7114 -2.6417 45 1 0.1842 1.6453 -4.1524 46 1 0.8447 0.2754 -5.0772 47 1 -1.2539 1.3182 -6.4080 48 1 -3.2409 2.0933 -8.9754 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467837044.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:48 Heat of formation + Delta-G solvation = -177.956649 kcal Electronic energy + Delta-G solvation = -30227.709054 eV Core-core repulsion = 25895.771010 eV Total energy + Delta-G solvation = -4331.938044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99578 -39.72484 -38.37809 -37.70612 -36.90318 -34.75105 -34.41107 -33.85697 -31.86299 -31.41771 -29.77091 -29.02093 -28.26097 -26.57934 -24.54073 -22.54433 -21.92223 -20.85064 -20.48090 -20.00832 -19.62928 -18.38271 -18.07124 -17.86531 -16.88939 -16.76822 -16.00805 -15.76856 -15.43226 -15.27868 -15.07767 -14.96561 -14.53095 -14.26383 -13.99319 -13.81357 -13.72453 -13.53166 -13.37731 -12.89287 -12.46725 -12.31086 -12.24717 -12.14179 -12.03506 -11.70086 -11.68014 -11.57536 -11.49604 -11.46675 -11.15813 -11.14660 -10.76220 -10.54696 -10.49627 -10.36993 -10.09779 -10.01480 -9.68463 -9.27298 -9.00269 -8.71896 -8.16619 -6.57098 -3.99386 2.24246 2.41639 2.67456 3.09998 3.18392 3.20190 3.26742 3.66079 4.03610 4.09322 4.09998 4.17607 4.37244 4.54744 4.63205 4.74544 4.76994 4.83444 4.96164 5.07632 5.10987 5.11976 5.13892 5.18231 5.29634 5.32591 5.47282 5.58777 5.66550 5.72613 5.74108 5.79110 5.80485 5.82138 5.92128 5.95871 5.98712 6.06418 6.12286 6.42926 7.16824 7.40425 7.40712 7.50837 7.84681 7.92643 8.10929 8.38098 8.98541 9.31960 9.79435 10.59477 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018087 B = 0.002141 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.691425 B =13077.533451 C =13850.768998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.103 3.897 3 H 0.063 0.937 4 O -0.543 6.543 5 C 0.094 3.906 6 H 0.118 0.882 7 N -0.717 5.717 8 C 0.513 3.487 9 O -0.519 6.519 10 C -0.113 4.113 11 C -0.115 4.115 12 C -0.123 4.123 13 C -0.125 4.125 14 C -0.112 4.112 15 C 0.514 3.486 16 O -0.543 6.543 17 N -0.697 5.697 18 C 0.107 3.893 19 C 0.425 3.575 20 O -0.596 6.596 21 N -0.547 5.547 22 C -0.306 4.306 23 H 0.106 0.894 24 C 0.027 3.973 25 N -0.894 5.894 26 Si 0.934 3.066 27 H -0.272 1.272 28 H -0.283 1.283 29 H -0.272 1.272 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.369 0.631 34 H 0.411 0.589 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.415 0.585 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.396 0.604 48 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.449 -3.828 13.695 24.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.042 3.958 3 H 0.081 0.919 4 O -0.348 6.348 5 C -0.015 4.015 6 H 0.136 0.864 7 N -0.372 5.372 8 C 0.300 3.700 9 O -0.394 6.394 10 C -0.134 4.134 11 C -0.153 4.153 12 C -0.161 4.161 13 C -0.163 4.163 14 C -0.150 4.150 15 C 0.298 3.702 16 O -0.421 6.421 17 N -0.352 5.352 18 C -0.020 4.020 19 C 0.211 3.789 20 O -0.482 6.482 21 N -0.181 5.181 22 C -0.436 4.436 23 H 0.124 0.876 24 C -0.177 4.177 25 N -0.534 5.534 26 Si 0.761 3.239 27 H -0.197 1.197 28 H -0.208 1.208 29 H -0.197 1.197 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.217 0.783 34 H 0.248 0.752 35 H 0.120 0.880 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.254 0.746 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.230 0.770 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 18.332 -4.343 14.077 23.517 hybrid contribution 0.020 0.419 -1.023 1.105 sum 18.352 -3.924 13.054 22.860 Atomic orbital electron populations 1.21907 0.91774 1.03959 1.03698 1.22023 0.96039 0.94385 0.83379 0.91934 1.86597 1.26357 1.79962 1.41933 1.21689 0.83032 1.02327 0.94483 0.86439 1.45873 1.06039 1.29074 1.56255 1.20742 0.90891 0.80454 0.77933 1.90779 1.63466 1.40438 1.44708 1.22248 0.90975 1.01349 0.98847 1.22571 0.96805 1.01426 0.94523 1.22351 0.96801 0.98766 0.98189 1.22153 0.97658 0.99405 0.97082 1.22089 0.98481 0.96122 0.98340 1.20223 0.82115 0.83169 0.84708 1.90691 1.50891 1.35544 1.64939 1.45762 1.16279 1.48213 1.24914 1.21029 0.96712 0.98023 0.86270 1.19678 0.88111 0.86691 0.84455 1.90514 1.62030 1.39863 1.55838 1.41784 1.15493 1.40625 1.20205 1.19689 0.90668 1.26411 1.06793 0.87648 1.25335 1.00319 0.96035 0.95967 1.69599 1.38051 1.30106 1.15622 0.85861 0.81325 0.78846 0.77891 1.19716 1.20832 1.19733 0.90962 0.90775 0.90269 0.78307 0.75165 0.88007 0.90580 0.90811 0.91326 0.91307 0.91627 0.91685 0.89608 0.91358 0.74619 0.89476 0.89654 0.77034 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 8.79 37.16 0.33 -1.49 16 2 C 0.10 1.20 3.39 -26.73 -0.09 1.11 16 3 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 4 O -0.54 -6.84 12.26 -52.76 -0.65 -7.49 16 5 C 0.09 1.13 2.31 -69.08 -0.16 0.97 16 6 H 0.12 1.55 7.58 -51.93 -0.39 1.15 16 7 N -0.72 -7.25 4.86 -54.94 -0.27 -7.52 16 8 C 0.51 5.27 5.56 -10.99 -0.06 5.21 16 9 O -0.52 -7.14 13.68 -11.97 -0.16 -7.31 16 10 C -0.11 -0.83 3.25 -89.93 -0.29 -1.12 16 11 C -0.12 -0.79 6.34 -24.55 -0.16 -0.95 16 12 C -0.12 -0.72 6.82 -25.07 -0.17 -0.89 16 13 C -0.13 -0.79 6.80 -25.61 -0.17 -0.96 16 14 C -0.11 -0.85 6.18 -25.61 -0.16 -1.01 16 15 C 0.51 7.22 6.47 -10.99 -0.07 7.15 16 16 O -0.54 -8.62 16.04 5.55 0.09 -8.53 16 17 N -0.70 -10.65 4.68 -61.47 -0.29 -10.94 16 18 C 0.11 1.83 6.16 -5.19 -0.03 1.80 16 19 C 0.43 9.31 7.85 -10.98 -0.09 9.23 16 20 O -0.60 -14.69 15.24 5.54 0.08 -14.60 16 21 N -0.55 -13.09 5.29 -10.96 -0.06 -13.15 16 22 C -0.31 -8.12 9.68 -14.93 -0.14 -8.27 16 23 H 0.11 2.91 7.16 -52.49 -0.38 2.54 16 24 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 25 N -0.89 -23.34 13.05 55.50 0.72 -22.62 16 26 Si 0.93 20.20 29.55 -169.99 -5.02 15.18 16 27 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 28 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 29 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.95 6.74 -51.93 -0.35 0.60 16 33 H 0.37 3.98 6.69 45.56 0.30 4.28 16 34 H 0.41 3.76 7.80 -40.82 -0.32 3.45 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.61 8.06 -51.93 -0.42 0.19 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 0.84 6.85 -51.93 -0.36 0.49 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.41 6.42 6.73 -40.82 -0.27 6.14 16 45 H 0.09 1.41 8.14 -51.92 -0.42 0.98 16 46 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.40 9.09 7.90 -40.82 -0.32 8.76 16 48 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 392.60 15.07 5.92 5.92 Total: -1.00 -31.35 392.60 -7.71 -39.07 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: -6.71 Total: 20.64 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: -1.37 Total: 11.35 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.11 Total: -54.22 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -0.64 Total: -37.93 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.35 -7.71 -39.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467837044.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.891 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds