Wall clock time and date at job start Sat Apr 11 2020 06:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46449 * 2 1 4 4 N 1.46500 * 109.47329 * 119.99460 * 2 1 3 5 5 C 1.34771 * 120.00378 * 275.00297 * 4 2 1 6 6 O 1.21287 * 119.99961 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00242 * 180.02562 * 5 4 2 8 8 H 1.09000 * 109.52213 * 304.86555 * 7 5 4 9 9 C 1.53139 * 109.52535 * 64.99822 * 7 5 4 10 10 O 1.43079 * 109.15321 * 175.21587 * 9 7 5 11 11 C 1.43077 * 113.58870 * 302.04779 * 10 9 7 12 12 C 1.53146 * 109.15140 * 57.95629 * 11 10 9 13 13 O 1.43078 * 109.52512 * 184.67717 * 7 5 4 14 14 C 1.52992 * 109.47275 * 240.00136 * 2 1 3 15 15 C 1.53931 * 113.73605 * 77.93541 * 14 2 1 16 16 N 1.48299 * 86.06463 * 138.13157 * 15 14 2 17 17 C 1.46897 * 111.01027 * 222.41808 * 16 15 14 18 18 C 1.50696 * 109.47187 * 289.35464 * 17 16 15 19 19 O 1.21294 * 120.00140 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99542 * 179.97438 * 18 17 16 21 21 C 1.37103 * 119.99599 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00007 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99942 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99917 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99977 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46682 * 90.00036 * 25 23 21 27 27 H 1.48494 * 109.46918 * 210.00096 * 25 23 21 28 28 H 1.48496 * 109.47024 * 329.99994 * 25 23 21 29 29 C 1.47956 * 90.75243 * 335.31314 * 16 15 14 30 30 H 1.08992 * 109.47519 * 64.00166 * 1 2 3 31 31 H 1.09005 * 109.46735 * 184.00219 * 1 2 3 32 32 H 1.09005 * 109.47009 * 303.99313 * 1 2 3 33 33 H 0.96996 * 119.99645 * 95.00250 * 4 2 1 34 34 H 1.09000 * 109.52647 * 295.12061 * 9 7 5 35 35 H 1.09006 * 109.52297 * 55.31457 * 9 7 5 36 36 H 1.08998 * 109.51936 * 177.85044 * 11 10 9 37 37 H 1.08998 * 109.52984 * 297.98362 * 11 10 9 38 38 H 1.08997 * 109.52851 * 64.58618 * 12 11 10 39 39 H 1.09000 * 109.52131 * 184.78670 * 12 11 10 40 40 H 1.09006 * 112.93917 * 306.37457 * 14 2 1 41 41 H 1.09008 * 113.76180 * 252.50432 * 15 14 2 42 42 H 1.08997 * 113.76245 * 23.87008 * 15 14 2 43 43 H 1.09005 * 109.46870 * 49.35051 * 17 16 15 44 44 H 1.08999 * 109.47446 * 169.34436 * 17 16 15 45 45 H 0.96998 * 120.00397 * 359.97438 * 20 18 17 46 46 H 0.97003 * 119.99980 * 180.02562 * 24 23 21 47 47 H 1.09007 * 113.75824 * 270.36416 * 29 16 15 48 48 H 1.09000 * 113.86101 * 139.01827 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8591 1.1588 2.4115 7 6 2.6501 -0.7283 3.5874 8 1 2.0285 -1.6020 3.7834 9 6 4.0995 -1.1704 3.3666 10 8 4.6050 -1.7433 4.5764 11 6 4.5507 -0.8552 5.6968 12 6 3.1011 -0.4132 5.9177 13 8 2.5956 0.1597 4.7080 14 6 2.0401 -0.7212 -1.2492 15 6 1.9689 0.1310 -2.5291 16 7 3.3076 -0.4212 -2.8487 17 6 4.1968 0.6237 -3.3736 18 6 3.7437 1.0217 -4.7547 19 8 2.7757 0.4872 -5.2529 20 7 4.4143 1.9717 -5.4361 21 6 4.0025 2.3335 -6.6928 22 1 3.1410 1.8569 -7.1368 23 6 4.6941 3.3125 -7.3956 24 7 5.7426 3.8920 -6.8555 25 14 4.1334 3.8049 -9.1081 26 1 3.1561 4.9185 -9.0078 27 1 5.3062 4.2457 -9.9052 28 1 3.4922 2.6418 -9.7725 29 6 3.5696 -0.6689 -1.4138 30 1 -0.3634 0.4504 -0.9236 31 1 -0.3633 -1.0252 0.0717 32 1 -0.3633 0.5746 0.8521 33 1 2.2491 -1.6316 1.1527 34 1 4.1366 -1.9123 2.5689 35 1 4.7057 -0.3074 3.0912 36 1 4.9144 -1.3690 6.5867 37 1 5.1729 0.0178 5.5003 38 1 2.4950 -1.2762 6.1931 39 1 3.0641 0.3288 6.7153 40 1 1.6204 -1.7207 -1.3638 41 1 1.1867 -0.1806 -3.2214 42 1 1.9701 1.2049 -2.3423 43 1 4.1641 1.4925 -2.7161 44 1 5.2168 0.2426 -3.4215 45 1 5.1883 2.3995 -5.0375 46 1 6.2252 4.5757 -7.3460 47 1 4.0380 0.1715 -0.9014 48 1 4.0656 -1.6187 -1.2137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485490644.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:03 Heat of formation + Delta-G solvation = -119.218603 kcal Electronic energy + Delta-G solvation = -29962.921228 eV Core-core repulsion = 25633.530257 eV Total energy + Delta-G solvation = -4329.390971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.01128 -40.23484 -39.12288 -37.74566 -36.53459 -35.40489 -33.89340 -32.78186 -31.36846 -31.04802 -29.50528 -28.47070 -26.06529 -25.78374 -25.47456 -24.14272 -22.66247 -21.66121 -20.81581 -19.75334 -19.20904 -18.06554 -17.81878 -17.50650 -16.99448 -16.52351 -16.32662 -15.99984 -15.79352 -15.53039 -15.38582 -14.80270 -14.70049 -14.55362 -14.03488 -13.92575 -13.73138 -13.56071 -13.48137 -13.03245 -12.83908 -12.65049 -12.49853 -12.21862 -12.14595 -11.91580 -11.58890 -11.43570 -11.36827 -11.13609 -11.07552 -10.92878 -10.81425 -10.53786 -10.38741 -10.21232 -10.04625 -9.71352 -9.50201 -9.40729 -8.65798 -8.22949 -7.96256 -6.41454 -3.82323 2.21574 2.35838 3.13043 3.17973 3.26594 3.32511 3.43655 3.88479 3.96001 3.97058 4.19443 4.20750 4.35018 4.41052 4.43099 4.55603 4.57540 4.67848 4.88921 4.94865 5.01336 5.04047 5.14843 5.19492 5.21307 5.23238 5.26654 5.42207 5.50511 5.53574 5.67590 5.70889 5.75738 5.83031 5.98722 6.06163 6.17098 6.25975 6.30695 6.36001 6.39994 6.60610 7.13212 7.19078 7.55319 7.87103 8.05798 8.61371 9.18016 9.54257 10.05786 10.76303 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020401 B = 0.001938 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.151993 B =14445.245487 C =14910.784950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.151 3.849 3 H 0.090 0.910 4 N -0.719 5.719 5 C 0.522 3.478 6 O -0.512 6.512 7 C 0.037 3.963 8 H 0.094 0.906 9 C 0.037 3.963 10 O -0.373 6.373 11 C 0.020 3.980 12 C 0.023 3.977 13 O -0.350 6.350 14 C -0.129 4.129 15 C 0.034 3.966 16 N -0.452 5.452 17 C 0.010 3.990 18 C 0.444 3.556 19 O -0.580 6.580 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 C 0.004 3.996 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.401 0.599 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.090 0.910 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.067 0.933 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 -11.496 25.844 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.108 0.892 4 N -0.372 5.372 5 C 0.306 3.694 6 O -0.386 6.386 7 C -0.024 4.024 8 H 0.112 0.888 9 C -0.041 4.041 10 O -0.291 6.291 11 C -0.057 4.057 12 C -0.054 4.054 13 O -0.268 6.268 14 C -0.149 4.149 15 C -0.096 4.096 16 N -0.175 5.175 17 C -0.122 4.122 18 C 0.229 3.771 19 O -0.463 6.463 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.126 4.126 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.235 0.765 34 H 0.131 0.869 35 H 0.088 0.912 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.108 0.892 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.012 -11.338 24.966 27.712 hybrid contribution 0.510 0.892 -0.039 1.028 sum -3.502 -10.446 24.927 27.253 Atomic orbital electron populations 1.22148 0.94701 1.02285 1.02959 1.21109 0.94503 0.97208 0.82440 0.89173 1.45972 1.67776 1.14133 1.09333 1.19891 0.78431 0.87372 0.83754 1.90764 1.48092 1.15456 1.84254 1.22593 0.98184 0.93781 0.87872 0.88814 1.23159 0.92196 1.00422 0.88282 1.88132 1.83564 1.39716 1.17705 1.23338 0.96815 0.95192 0.90369 1.23361 0.94303 1.00128 0.87563 1.88249 1.83812 1.38181 1.16589 1.23408 0.96386 1.01147 0.93937 1.23804 0.94417 0.97380 0.93963 1.68481 1.02248 1.33518 1.13217 1.22460 0.98645 0.94433 0.96666 1.19677 0.86526 0.83670 0.87231 1.90517 1.29094 1.56492 1.70244 1.41879 1.28203 1.34127 1.15911 1.19694 1.13010 1.18741 0.91370 0.87926 1.25271 0.95857 0.96661 1.00221 1.69613 1.18939 1.26916 1.38846 0.85853 0.77970 0.78956 0.81485 1.20417 1.20922 1.19410 1.23989 0.95556 1.02064 0.90959 0.90903 0.92286 0.92167 0.76511 0.86941 0.91167 0.87327 0.91644 0.91797 0.87075 0.87689 0.88433 0.91341 0.92839 0.89192 0.77504 0.91872 0.91450 0.89459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.46 37.16 0.35 -1.18 16 2 C 0.15 1.48 2.29 -67.93 -0.16 1.32 16 3 H 0.09 1.10 7.49 -51.93 -0.39 0.71 16 4 N -0.72 -5.66 4.91 -53.81 -0.26 -5.92 16 5 C 0.52 5.43 7.15 -10.99 -0.08 5.36 16 6 O -0.51 -7.81 16.17 -14.27 -0.23 -8.04 16 7 C 0.04 0.31 3.25 -27.81 -0.09 0.22 16 8 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 9 C 0.04 0.26 6.29 37.23 0.23 0.49 16 10 O -0.37 -2.90 10.85 -48.80 -0.53 -3.43 16 11 C 0.02 0.11 7.05 37.23 0.26 0.38 16 12 C 0.02 0.15 7.05 37.23 0.26 0.41 16 13 O -0.35 -3.58 10.03 -62.51 -0.63 -4.21 16 14 C -0.13 -1.32 3.34 -89.70 -0.30 -1.62 16 15 C 0.03 0.49 6.16 -2.57 -0.02 0.48 16 16 N -0.45 -7.24 5.95 -239.43 -1.42 -8.66 16 17 C 0.01 0.18 5.31 -4.98 -0.03 0.15 16 18 C 0.44 10.54 7.59 -10.99 -0.08 10.46 16 19 O -0.58 -15.67 15.13 5.55 0.08 -15.59 16 20 N -0.56 -14.45 5.29 -10.96 -0.06 -14.50 16 21 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 25 Si 0.93 21.20 29.55 -169.99 -5.02 16.17 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 C 0.00 0.04 7.41 -2.77 -0.02 0.02 16 30 H 0.07 0.70 7.99 -51.93 -0.42 0.28 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.40 1.95 8.51 -40.82 -0.35 1.60 16 34 H 0.11 0.51 8.05 -51.93 -0.42 0.09 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.10 1.58 8.10 -51.92 -0.42 1.16 16 42 H 0.07 1.03 7.68 -51.93 -0.40 0.63 16 43 H 0.05 0.87 7.69 -51.93 -0.40 0.47 16 44 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 46 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.07 0.75 7.75 -51.92 -0.40 0.34 16 48 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 395.99 15.07 5.97 5.97 Total: -1.00 -35.95 395.99 -8.96 -44.91 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -7.67 Total: 8.89 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 0.10 Total: 8.42 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -1.02 Total: -53.09 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -1.30 Total: -31.27 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.95 -8.96 -44.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485490644.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.308 kcal (2) G-P(sol) polarization free energy of solvation -35.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds