Wall clock time and date at job start Sat Apr 11 2020 06:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47179 * 2 1 4 4 C 1.53001 * 109.47040 * 240.00315 * 2 1 3 5 5 N 1.46899 * 109.47409 * 184.99503 * 4 2 1 6 6 C 1.46906 * 111.00200 * 293.95764 * 5 4 2 7 7 C 1.46898 * 111.00355 * 170.00023 * 5 4 2 8 8 H 1.08993 * 109.47084 * 59.99716 * 7 5 4 9 9 C 1.53006 * 109.47006 * 300.00015 * 7 5 4 10 10 C 1.50699 * 109.47309 * 180.02562 * 7 5 4 11 11 N 1.30525 * 126.34879 * 45.02550 * 10 7 5 12 12 N 1.28590 * 109.67725 * 179.97438 * 11 10 7 13 13 C 1.30521 * 109.67081 * 359.97438 * 12 11 10 14 14 N 1.35488 * 126.34893 * 224.70987 * 10 7 5 15 15 C 1.46505 * 126.97847 * 0.03926 * 14 10 7 16 16 N 1.46499 * 109.47746 * 120.00119 * 2 1 3 17 17 C 1.34780 * 119.99913 * 275.00348 * 16 2 1 18 18 O 1.21277 * 120.00100 * 359.97438 * 17 16 2 19 19 C 1.50698 * 119.99892 * 179.97438 * 17 16 2 20 20 S 1.80991 * 109.47164 * 179.97438 * 19 17 16 21 21 C 1.76201 * 100.00051 * 179.97438 * 20 19 17 22 22 H 1.07989 * 120.00205 * 0.02562 * 21 20 19 23 23 C 1.38807 * 119.99947 * 179.97438 * 21 20 19 24 24 N 1.31628 * 119.99884 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 119.99881 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47024 * 90.00113 * 25 23 21 27 27 H 1.48501 * 109.46754 * 209.99710 * 25 23 21 28 28 H 1.48501 * 109.47113 * 329.99947 * 25 23 21 29 29 H 1.09004 * 109.47157 * 299.99627 * 1 2 3 30 30 H 1.08993 * 109.47709 * 59.99837 * 1 2 3 31 31 H 1.09006 * 109.47179 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47037 * 64.99790 * 4 2 1 33 33 H 1.08999 * 109.47278 * 304.99949 * 4 2 1 34 34 H 1.09006 * 109.46708 * 296.04154 * 6 5 4 35 35 H 1.08993 * 109.47274 * 56.04134 * 6 5 4 36 36 H 1.09000 * 109.46765 * 176.04194 * 6 5 4 37 37 H 1.09001 * 109.46801 * 300.00064 * 9 7 5 38 38 H 1.09001 * 109.46998 * 59.99660 * 9 7 5 39 39 H 1.09000 * 109.47050 * 179.97438 * 9 7 5 40 40 H 1.08002 * 126.34760 * 180.02562 * 13 12 11 41 41 H 1.08997 * 109.46929 * 89.99697 * 15 14 10 42 42 H 1.08996 * 109.47449 * 209.99744 * 15 14 10 43 43 H 1.09001 * 109.46835 * 330.00192 * 15 14 10 44 44 H 0.96997 * 119.99934 * 95.00078 * 16 2 1 45 45 H 1.09005 * 109.47185 * 299.99831 * 19 17 16 46 46 H 1.08999 * 109.47235 * 59.99291 * 19 17 16 47 47 H 0.96997 * 119.99887 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5039 -0.8265 -1.1906 6 6 4.1309 0.4995 -1.2721 7 6 4.0107 -1.7142 -2.2457 8 1 3.7276 -1.3180 -3.2208 9 6 3.4109 -3.1106 -2.0690 10 6 5.5125 -1.7978 -2.1535 11 7 6.2129 -1.9603 -1.0642 12 7 7.4653 -1.9872 -1.3546 13 6 7.6208 -1.8436 -2.6425 14 7 6.3858 -1.7241 -3.1868 15 6 6.0608 -1.5480 -4.6045 16 7 2.0184 -0.6906 1.1961 17 6 2.1471 -0.0182 2.3571 18 8 1.8590 1.1585 2.4115 19 6 2.6491 -0.7288 3.5876 20 16 2.7108 0.4343 4.9729 21 6 3.3126 -0.6313 6.2406 22 1 3.5214 -1.6677 6.0208 23 6 3.5194 -0.1382 7.5216 24 7 3.9694 -0.9342 8.4684 25 14 3.1589 1.6549 7.9017 26 1 1.7482 1.7931 8.3444 27 1 4.0646 2.1237 8.9811 28 1 3.3774 2.4731 6.6818 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7515 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2953 34 1 3.9100 0.9469 -2.2413 35 1 3.7380 1.1365 -0.4798 36 1 5.2100 0.3989 -1.1559 37 1 3.6939 -3.5069 -1.0938 38 1 2.3245 -3.0505 -2.1353 39 1 3.7865 -3.7692 -2.8522 40 1 8.5598 -1.8271 -3.1760 41 1 6.0305 -0.4844 -4.8408 42 1 6.8218 -2.0342 -5.2148 43 1 5.0884 -1.9943 -4.8124 44 1 2.2492 -1.6317 1.1525 45 1 1.9762 -1.5507 3.8325 46 1 3.6481 -1.1214 3.3984 47 1 4.1135 -0.5897 9.3637 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498226459.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:06 Heat of formation + Delta-G solvation = 58.333693 kcal Electronic energy + Delta-G solvation = -27824.510507 eV Core-core repulsion = 23977.864403 eV Total energy + Delta-G solvation = -3846.646103 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.42103 -39.62912 -38.27025 -35.52637 -35.08771 -32.34773 -32.30069 -31.13925 -30.03513 -28.50644 -28.12864 -27.17941 -25.49304 -25.12334 -23.42258 -22.59751 -21.23140 -20.28510 -20.05810 -17.80244 -17.53741 -16.97274 -16.49322 -16.22987 -16.09587 -15.38047 -15.24644 -14.97245 -14.85195 -14.65772 -14.23919 -13.94109 -13.76970 -13.52674 -13.21602 -13.14979 -12.83913 -12.73014 -12.68162 -12.60965 -12.11511 -12.00143 -11.95670 -11.81261 -11.67002 -11.39932 -11.15040 -10.91504 -10.83154 -10.53158 -10.52005 -10.45483 -9.75000 -9.47044 -9.31461 -8.89577 -8.74862 -8.68147 -8.35839 -6.77373 -6.17453 -3.87398 1.46362 2.03774 2.69410 2.92706 3.19266 3.36631 3.41118 3.49905 3.59856 3.77728 3.84630 4.03838 4.24978 4.39304 4.41926 4.43699 4.51998 4.66839 4.70999 4.84027 4.93014 5.02241 5.06676 5.14260 5.18462 5.21614 5.24548 5.29683 5.36624 5.43194 5.46878 5.54182 5.65985 5.76439 5.85356 5.88201 5.97505 6.00721 6.14049 6.24707 6.45095 6.62356 6.64879 6.84262 7.89162 8.06104 8.54939 8.55606 8.73028 9.29068 10.92039 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013266 B = 0.002718 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.225016 B =10297.508080 C =11626.360361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.150 3.850 3 H 0.086 0.914 4 C 0.043 3.957 5 N -0.516 5.516 6 C 0.025 3.975 7 C 0.175 3.825 8 H 0.053 0.947 9 C -0.146 4.146 10 C 0.177 3.823 11 N -0.256 5.256 12 N -0.294 5.294 13 C 0.144 3.856 14 N -0.481 5.481 15 C 0.072 3.928 16 N -0.715 5.715 17 C 0.535 3.465 18 O -0.529 6.529 19 C -0.122 4.122 20 S -0.145 6.145 21 C -0.517 4.517 22 H 0.088 0.912 23 C 0.094 3.906 24 N -0.883 5.883 25 Si 0.857 3.143 26 H -0.268 1.268 27 H -0.276 1.276 28 H -0.235 1.235 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.020 0.980 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.217 0.783 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.402 0.598 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.801 -3.464 -34.666 34.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 H 0.104 0.896 4 C -0.085 4.085 5 N -0.240 5.240 6 C -0.123 4.123 7 C 0.064 3.936 8 H 0.071 0.929 9 C -0.204 4.204 10 C -0.091 4.091 11 N -0.096 5.096 12 N -0.133 5.133 13 C -0.143 4.143 14 N -0.173 5.173 15 C -0.072 4.072 16 N -0.368 5.368 17 C 0.321 3.679 18 O -0.405 6.405 19 C -0.272 4.272 20 S 0.081 5.919 21 C -0.665 4.665 22 H 0.106 0.894 23 C -0.114 4.114 24 N -0.519 5.519 25 Si 0.682 3.318 26 H -0.193 1.193 27 H -0.201 1.201 28 H -0.159 1.159 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.039 0.961 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.234 0.766 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.237 0.763 45 H 0.112 0.888 46 H 0.117 0.883 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.734 -1.921 -32.496 32.561 hybrid contribution 0.139 -0.611 -2.011 2.107 sum -0.595 -2.532 -34.507 34.605 Atomic orbital electron populations 1.22167 0.95094 1.02203 1.02725 1.20816 0.93472 0.97504 0.83856 0.89614 1.22607 0.87009 1.01758 0.97112 1.61799 1.05150 1.11713 1.45361 1.22436 1.00528 0.89267 1.00051 1.19806 0.84013 0.95988 0.93803 0.92945 1.21933 1.00882 0.93553 1.04011 1.24592 0.95326 1.05201 0.83979 1.74447 0.96955 1.16308 1.21877 1.74416 1.10580 1.17559 1.10767 1.26488 0.89817 1.05304 0.92649 1.46239 1.07223 1.54530 1.09319 1.22100 1.03790 1.03746 0.77537 1.45756 1.68336 1.14148 1.08586 1.20195 0.76652 0.87105 0.83945 1.90669 1.49234 1.15829 1.84717 1.23257 1.04673 1.03167 0.96151 1.84696 1.87101 1.16892 1.03210 1.22344 1.50218 0.98706 0.95190 0.89389 1.24718 0.93491 0.98197 0.95006 1.69946 1.43795 1.35738 1.02470 0.86732 0.79136 0.85468 0.80484 1.19331 1.20084 1.15906 0.91307 0.92110 0.92369 0.93385 0.89304 0.96124 0.90091 0.91364 0.90014 0.90984 0.92211 0.76630 0.90033 0.88775 0.89248 0.76314 0.88784 0.88290 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.48 37.15 0.35 -1.23 16 2 C 0.15 1.62 2.36 -67.93 -0.16 1.46 16 3 H 0.09 1.12 6.15 -51.93 -0.32 0.80 16 4 C 0.04 0.33 4.33 -3.82 -0.02 0.31 16 5 N -0.52 -4.85 4.34 -236.28 -1.03 -5.88 16 6 C 0.03 0.27 9.06 60.07 0.54 0.81 16 7 C 0.17 1.33 2.38 -68.86 -0.16 1.16 16 8 H 0.05 0.28 7.24 -51.93 -0.38 -0.09 16 9 C -0.15 -0.94 8.97 37.16 0.33 -0.61 16 10 C 0.18 1.77 5.27 -154.99 -0.82 0.95 16 11 N -0.26 -3.68 11.90 32.79 0.39 -3.29 16 12 N -0.29 -4.05 12.21 29.69 0.36 -3.68 16 13 C 0.14 1.24 12.74 -89.95 -1.15 0.09 16 14 N -0.48 -3.43 3.15 -122.69 -0.39 -3.82 16 15 C 0.07 0.15 10.84 59.85 0.65 0.79 16 16 N -0.71 -9.55 4.80 -53.81 -0.26 -9.81 16 17 C 0.53 9.92 7.81 -10.98 -0.09 9.84 16 18 O -0.53 -11.62 15.52 5.56 0.09 -11.54 16 19 C -0.12 -2.53 6.16 36.00 0.22 -2.31 16 20 S -0.15 -3.86 18.55 -107.50 -1.99 -5.85 16 21 C -0.52 -15.54 10.04 30.94 0.31 -15.23 16 22 H 0.09 2.77 8.03 -52.49 -0.42 2.34 16 23 C 0.09 2.86 5.50 -17.43 -0.10 2.76 16 24 N -0.88 -27.58 13.97 55.49 0.78 -26.81 16 25 Si 0.86 22.61 27.74 -169.99 -4.72 17.89 16 26 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.24 -6.21 6.74 56.52 0.38 -5.82 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.30 8.12 -51.93 -0.42 -0.13 16 33 H 0.09 0.54 5.83 -51.93 -0.30 0.24 16 34 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.08 1.01 6.40 -51.93 -0.33 0.67 16 36 H 0.07 0.87 6.74 -51.93 -0.35 0.52 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.34 6.20 -51.93 -0.32 0.02 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.22 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 42 H 0.09 0.00 8.14 -51.93 -0.42 -0.43 16 43 H 0.09 0.08 7.47 -51.93 -0.39 -0.30 16 44 H 0.40 4.69 8.60 -40.82 -0.35 4.34 16 45 H 0.09 1.82 8.14 -51.91 -0.42 1.39 16 46 H 0.10 2.02 8.14 -51.92 -0.42 1.60 16 47 H 0.27 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 396.65 15.07 5.98 5.98 Total: -1.00 -39.65 396.65 -8.25 -47.91 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.39 Total: 0.09 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -0.07 Total: -1.20 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.14 Total: -53.28 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.72 Total: 17.89 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -1.99 Total: -5.85 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -39.65 -8.25 -47.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498226459.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.241 kcal (2) G-P(sol) polarization free energy of solvation -39.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds