Wall clock time and date at job start Sat Apr 11 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47179 * 2 1 4 4 C 1.53001 * 109.47040 * 240.00315 * 2 1 3 5 5 N 1.46899 * 109.47409 * 184.99503 * 4 2 1 6 6 C 1.46906 * 111.00200 * 293.95764 * 5 4 2 7 7 C 1.46898 * 111.00355 * 170.00023 * 5 4 2 8 8 H 1.08993 * 109.47084 * 59.99716 * 7 5 4 9 9 C 1.53006 * 109.47006 * 300.00015 * 7 5 4 10 10 C 1.50699 * 109.47309 * 180.02562 * 7 5 4 11 11 N 1.30525 * 126.34879 * 45.02550 * 10 7 5 12 12 N 1.28590 * 109.67725 * 179.97438 * 11 10 7 13 13 C 1.30521 * 109.67081 * 359.97438 * 12 11 10 14 14 N 1.35488 * 126.34893 * 224.70987 * 10 7 5 15 15 C 1.46505 * 126.97847 * 0.03926 * 14 10 7 16 16 N 1.46499 * 109.47746 * 120.00119 * 2 1 3 17 17 C 1.34780 * 119.99913 * 275.00348 * 16 2 1 18 18 O 1.21277 * 120.00100 * 359.97438 * 17 16 2 19 19 C 1.50698 * 119.99892 * 179.97438 * 17 16 2 20 20 S 1.80991 * 109.47164 * 179.97438 * 19 17 16 21 21 C 1.76201 * 100.00051 * 179.97438 * 20 19 17 22 22 H 1.07989 * 120.00205 * 0.02562 * 21 20 19 23 23 C 1.38807 * 119.99947 * 179.97438 * 21 20 19 24 24 N 1.31628 * 119.99884 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 119.99881 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47024 * 90.00113 * 25 23 21 27 27 H 1.48501 * 109.46754 * 209.99710 * 25 23 21 28 28 H 1.48501 * 109.47113 * 329.99947 * 25 23 21 29 29 H 1.09004 * 109.47157 * 299.99627 * 1 2 3 30 30 H 1.08993 * 109.47709 * 59.99837 * 1 2 3 31 31 H 1.09006 * 109.47179 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47037 * 64.99790 * 4 2 1 33 33 H 1.08999 * 109.47278 * 304.99949 * 4 2 1 34 34 H 1.09006 * 109.46708 * 296.04154 * 6 5 4 35 35 H 1.08993 * 109.47274 * 56.04134 * 6 5 4 36 36 H 1.09000 * 109.46765 * 176.04194 * 6 5 4 37 37 H 1.09001 * 109.46801 * 300.00064 * 9 7 5 38 38 H 1.09001 * 109.46998 * 59.99660 * 9 7 5 39 39 H 1.09000 * 109.47050 * 179.97438 * 9 7 5 40 40 H 1.08002 * 126.34760 * 180.02562 * 13 12 11 41 41 H 1.08997 * 109.46929 * 89.99697 * 15 14 10 42 42 H 1.08996 * 109.47449 * 209.99744 * 15 14 10 43 43 H 1.09001 * 109.46835 * 330.00192 * 15 14 10 44 44 H 0.96997 * 119.99934 * 95.00078 * 16 2 1 45 45 H 1.09005 * 109.47185 * 299.99831 * 19 17 16 46 46 H 1.08999 * 109.47235 * 59.99291 * 19 17 16 47 47 H 0.96997 * 119.99887 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5039 -0.8265 -1.1906 6 6 4.1309 0.4995 -1.2721 7 6 4.0107 -1.7142 -2.2457 8 1 3.7276 -1.3180 -3.2208 9 6 3.4109 -3.1106 -2.0690 10 6 5.5125 -1.7978 -2.1535 11 7 6.2129 -1.9603 -1.0642 12 7 7.4653 -1.9872 -1.3546 13 6 7.6208 -1.8436 -2.6425 14 7 6.3858 -1.7241 -3.1868 15 6 6.0608 -1.5480 -4.6045 16 7 2.0184 -0.6906 1.1961 17 6 2.1471 -0.0182 2.3571 18 8 1.8590 1.1585 2.4115 19 6 2.6491 -0.7288 3.5876 20 16 2.7108 0.4343 4.9729 21 6 3.3126 -0.6313 6.2406 22 1 3.5214 -1.6677 6.0208 23 6 3.5194 -0.1382 7.5216 24 7 3.9694 -0.9342 8.4684 25 14 3.1589 1.6549 7.9017 26 1 1.7482 1.7931 8.3444 27 1 4.0646 2.1237 8.9811 28 1 3.3774 2.4731 6.6818 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7515 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2953 34 1 3.9100 0.9469 -2.2413 35 1 3.7380 1.1365 -0.4798 36 1 5.2100 0.3989 -1.1559 37 1 3.6939 -3.5069 -1.0938 38 1 2.3245 -3.0505 -2.1353 39 1 3.7865 -3.7692 -2.8522 40 1 8.5598 -1.8271 -3.1760 41 1 6.0305 -0.4844 -4.8408 42 1 6.8218 -2.0342 -5.2148 43 1 5.0884 -1.9943 -4.8124 44 1 2.2492 -1.6317 1.1525 45 1 1.9762 -1.5507 3.8325 46 1 3.6481 -1.1214 3.3984 47 1 4.1135 -0.5897 9.3637 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498226459.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:04 Heat of formation + Delta-G solvation = 28.473250 kcal Electronic energy + Delta-G solvation = -27825.805353 eV Core-core repulsion = 23977.864403 eV Total energy + Delta-G solvation = -3847.940949 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -44.08832 -40.82522 -39.21737 -36.36074 -35.85175 -34.66688 -33.24260 -32.19439 -30.71680 -29.97595 -28.46600 -27.87553 -27.84245 -25.78572 -24.17382 -23.25112 -22.26690 -21.35552 -20.81350 -19.86777 -18.14897 -17.93029 -17.52980 -17.30080 -17.05394 -16.80129 -16.39167 -16.06542 -15.91814 -15.81934 -15.47126 -14.95705 -14.76846 -14.64102 -14.31177 -13.99372 -13.92484 -13.69535 -13.40820 -13.33937 -13.25321 -13.23948 -12.99468 -12.86783 -12.73986 -12.55432 -12.53239 -12.47507 -12.09468 -11.85895 -11.60881 -11.22174 -11.16298 -11.05348 -10.87709 -10.52981 -10.23083 -9.96855 -9.31662 -8.97411 -8.50789 -6.20970 0.86849 1.01239 1.30892 1.47524 1.57551 1.58670 1.69122 1.94678 2.25429 2.36509 2.72790 2.81795 2.87007 3.21733 3.72768 3.76655 3.89013 3.98269 3.98877 4.05291 4.17346 4.25420 4.31291 4.36718 4.41072 4.44442 4.51030 4.55030 4.62296 4.66632 4.68472 4.74480 4.83378 4.91345 4.93749 5.00014 5.12822 5.21592 5.33151 5.34958 5.62882 5.71684 5.94463 5.97314 6.08711 6.12127 6.62526 6.93985 7.33877 7.84072 8.62170 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013266 B = 0.002718 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.225016 B =10297.508080 C =11626.360361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.145 3.855 3 H 0.062 0.938 4 C 0.053 3.947 5 N -0.538 5.538 6 C 0.037 3.963 7 C 0.177 3.823 8 H 0.088 0.912 9 C -0.141 4.141 10 C 0.178 3.822 11 N -0.320 5.320 12 N -0.360 5.360 13 C 0.157 3.843 14 N -0.475 5.475 15 C 0.062 3.938 16 N -0.691 5.691 17 C 0.538 3.462 18 O -0.567 6.567 19 C -0.110 4.110 20 S -0.172 6.172 21 C -0.529 4.529 22 H 0.058 0.942 23 C 0.043 3.957 24 N -0.919 5.919 25 Si 0.918 3.082 26 H -0.259 1.259 27 H -0.258 1.258 28 H -0.238 1.238 29 H 0.033 0.967 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.039 0.961 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.256 0.744 41 H 0.093 0.907 42 H 0.118 0.882 43 H 0.106 0.894 44 H 0.413 0.587 45 H 0.110 0.890 46 H 0.100 0.900 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.184 -3.411 -38.768 38.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.080 0.920 4 C -0.075 4.075 5 N -0.263 5.263 6 C -0.111 4.111 7 C 0.066 3.934 8 H 0.106 0.894 9 C -0.199 4.199 10 C -0.091 4.091 11 N -0.159 5.159 12 N -0.199 5.199 13 C -0.131 4.131 14 N -0.166 5.166 15 C -0.079 4.079 16 N -0.343 5.343 17 C 0.323 3.677 18 O -0.447 6.447 19 C -0.261 4.261 20 S 0.054 5.946 21 C -0.677 4.677 22 H 0.076 0.924 23 C -0.162 4.162 24 N -0.557 5.557 25 Si 0.739 3.261 26 H -0.184 1.184 27 H -0.182 1.182 28 H -0.162 1.162 29 H 0.052 0.948 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.131 0.869 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.272 0.728 41 H 0.111 0.889 42 H 0.137 0.863 43 H 0.125 0.875 44 H 0.250 0.750 45 H 0.128 0.872 46 H 0.118 0.882 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.124 -1.913 -36.654 36.765 hybrid contribution 0.600 -0.744 -0.944 1.343 sum -1.524 -2.657 -37.598 37.723 Atomic orbital electron populations 1.22099 0.93676 1.03315 1.02398 1.21078 0.94501 0.96569 0.83852 0.92005 1.22592 0.85826 1.03077 0.95968 1.61678 1.06186 1.11211 1.47266 1.22197 0.98629 0.89910 1.00378 1.19999 0.82444 0.96242 0.94676 0.89421 1.21920 1.02335 0.92858 1.02815 1.24986 0.96464 1.03778 0.83895 1.74284 0.97763 1.19072 1.24822 1.74259 1.11078 1.20686 1.13887 1.27179 0.91635 1.02689 0.91627 1.46486 1.06123 1.53196 1.10798 1.22535 1.05642 1.05101 0.74637 1.45611 1.66354 1.14478 1.07890 1.19767 0.76792 0.86512 0.84608 1.90655 1.51432 1.17252 1.85321 1.23251 1.05491 1.02263 0.95129 1.84555 1.86832 1.18551 1.04622 1.22479 1.50399 0.98054 0.96756 0.92396 1.25614 0.93216 1.02518 0.94835 1.70026 1.44668 1.37807 1.03179 0.85824 0.79676 0.80114 0.80473 1.18350 1.18239 1.16225 0.94762 0.89333 0.90483 0.90384 0.86874 0.93585 0.92725 0.94237 0.92975 0.88524 0.90898 0.72777 0.88860 0.86330 0.87509 0.75041 0.87204 0.88186 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.48 71.98 0.68 -1.96 16 2 C 0.14 2.87 2.36 44.99 0.11 2.97 16 3 H 0.06 1.58 6.15 -2.38 -0.01 1.56 16 4 C 0.05 0.60 4.33 86.30 0.37 0.98 16 5 N -0.54 -9.04 4.34 -901.45 -3.92 -12.96 16 6 C 0.04 0.76 9.06 127.69 1.16 1.91 16 7 C 0.18 2.17 2.38 44.17 0.11 2.27 16 8 H 0.09 0.49 7.24 -2.39 -0.02 0.47 16 9 C -0.14 -1.39 8.97 71.98 0.65 -0.74 16 10 C 0.18 3.36 5.27 137.98 0.73 4.09 16 11 N -0.32 -9.52 11.90 -50.16 -0.60 -10.12 16 12 N -0.36 -10.30 12.21 -59.99 -0.73 -11.03 16 13 C 0.16 2.54 12.74 180.11 2.30 4.83 16 14 N -0.48 -5.76 3.15 -542.07 -1.71 -7.46 16 15 C 0.06 0.01 10.84 127.77 1.38 1.39 16 16 N -0.69 -17.90 4.80 -442.54 -2.12 -20.02 16 17 C 0.54 20.14 7.81 87.66 0.68 20.82 16 18 O -0.57 -25.43 15.52 -3.02 -0.05 -25.48 16 19 C -0.11 -4.67 6.16 71.24 0.44 -4.23 16 20 S -0.17 -9.32 18.55 -56.49 -1.05 -10.37 16 21 C -0.53 -32.80 10.04 67.96 0.68 -32.11 16 22 H 0.06 3.81 8.03 -2.92 -0.02 3.79 16 23 C 0.04 2.67 5.50 84.86 0.47 3.14 16 24 N -0.92 -58.54 13.97 21.65 0.30 -58.24 16 25 Si 0.92 47.23 27.74 68.60 1.90 49.13 16 26 H -0.26 -12.85 7.11 99.48 0.71 -12.15 16 27 H -0.26 -12.41 7.11 99.48 0.71 -11.71 16 28 H -0.24 -12.31 6.74 99.48 0.67 -11.64 16 29 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.08 0.53 8.12 -2.38 -0.02 0.51 16 33 H 0.11 0.80 5.83 -2.39 -0.01 0.79 16 34 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.05 1.38 6.40 -2.39 -0.02 1.37 16 36 H 0.04 1.03 6.74 -2.39 -0.02 1.01 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.10 0.45 6.20 -2.39 -0.01 0.44 16 39 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.26 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.12 -0.53 8.14 -2.39 -0.02 -0.55 16 43 H 0.11 -0.32 7.47 -2.39 -0.02 -0.34 16 44 H 0.41 9.08 8.60 -92.71 -0.80 8.28 16 45 H 0.11 4.27 8.14 -2.39 -0.02 4.25 16 46 H 0.10 4.20 8.14 -2.40 -0.02 4.18 16 47 H 0.28 16.25 8.31 -92.71 -0.77 15.48 16 Total: -1.00 -93.26 396.65 1.93 -91.33 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.15 Total: 11.84 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 9.75 Total: 3.36 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -8.77 Total: -119.82 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.05 Total: -25.48 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.90 Total: 49.13 kcal Atomic # 16 Polarization: -9.32 SS G_CDS: -1.05 Total: -10.37 kcal Total: -93.26 1.93 -91.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498226459.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.803 kcal (2) G-P(sol) polarization free energy of solvation -93.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds