Wall clock time and date at job start Sat Apr 11 2020 06:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09005 * 109.47216 * 2 1 4 4 C 1.50704 * 109.47456 * 239.99856 * 2 1 3 5 5 N 1.30517 * 126.34426 * 285.02531 * 4 2 1 6 6 N 1.28592 * 109.67076 * 179.97438 * 5 4 2 7 7 C 1.30519 * 109.67455 * 0.02562 * 6 5 4 8 8 N 1.35491 * 107.30721 * 359.97438 * 7 6 5 9 9 C 1.46501 * 126.98249 * 180.02562 * 8 7 6 10 10 N 1.46900 * 109.47341 * 119.99753 * 2 1 3 11 11 C 1.46905 * 111.00288 * 176.04938 * 10 2 1 12 12 C 1.46899 * 110.99864 * 299.99846 * 10 2 1 13 13 C 1.53001 * 109.47112 * 162.72542 * 12 10 2 14 14 H 1.08999 * 109.47171 * 302.57510 * 13 12 10 15 15 C 1.53005 * 109.47496 * 182.56869 * 13 12 10 16 16 N 1.46505 * 109.47215 * 62.57294 * 13 12 10 17 17 C 1.34773 * 120.00130 * 205.89977 * 16 13 12 18 18 O 1.21282 * 119.99894 * 359.97438 * 17 16 13 19 19 C 1.50704 * 119.99976 * 179.97438 * 17 16 13 20 20 S 1.80997 * 109.47052 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99875 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00043 * 0.02562 * 21 20 19 23 23 C 1.38811 * 119.99754 * 180.02562 * 21 20 19 24 24 N 1.31628 * 119.99480 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00154 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47137 * 89.99749 * 25 23 21 27 27 H 1.48499 * 109.47035 * 210.00033 * 25 23 21 28 28 H 1.48502 * 109.47182 * 330.00407 * 25 23 21 29 29 H 1.08999 * 109.47479 * 60.00064 * 1 2 3 30 30 H 1.08998 * 109.47346 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47092 * 300.00014 * 1 2 3 32 32 H 1.08004 * 126.34678 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.46566 * 269.97703 * 9 8 7 34 34 H 1.09002 * 109.46571 * 29.96893 * 9 8 7 35 35 H 1.08992 * 109.47628 * 149.97234 * 9 8 7 36 36 H 1.09000 * 109.47197 * 74.01138 * 11 10 2 37 37 H 1.08996 * 109.47214 * 194.01204 * 11 10 2 38 38 H 1.09005 * 109.46614 * 314.01235 * 11 10 2 39 39 H 1.08994 * 109.47524 * 282.72557 * 12 10 2 40 40 H 1.08999 * 109.47020 * 42.72974 * 12 10 2 41 41 H 1.09003 * 109.46679 * 60.00050 * 15 13 12 42 42 H 1.08992 * 109.46954 * 180.02562 * 15 13 12 43 43 H 1.08997 * 109.46700 * 300.00575 * 15 13 12 44 44 H 0.96998 * 119.99765 * 25.88974 * 16 13 12 45 45 H 1.08995 * 109.47074 * 299.99821 * 19 17 16 46 46 H 1.09002 * 109.46875 * 60.00495 * 19 17 16 47 47 H 0.97004 * 119.99816 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 2.0333 -1.9998 -1.4330 6 7 2.5336 -2.2559 -2.5895 7 6 2.8751 -1.1417 -3.1771 8 7 2.5665 -0.1290 -2.3315 9 6 2.7691 1.3036 -2.5611 10 7 2.0196 -0.6924 1.1994 11 6 3.4851 -0.7944 1.1871 12 6 1.5486 -0.0262 2.4210 13 6 1.6968 -0.9775 3.6102 14 1 1.1404 -1.8940 3.4138 15 6 1.1471 -0.3073 4.8711 16 7 3.1128 -1.2983 3.8055 17 6 3.4660 -2.4562 4.3979 18 8 2.6115 -3.2324 4.7697 19 6 4.9227 -2.7864 4.5983 20 16 5.0698 -4.3953 5.4144 21 6 6.8238 -4.5249 5.5211 22 1 7.4482 -3.7324 5.1361 23 6 7.4029 -5.6457 6.1002 24 7 8.7132 -5.7426 6.1795 25 14 6.3228 -7.0161 6.7669 26 1 6.0654 -8.0100 5.6939 27 1 7.0110 -7.6808 7.9026 28 1 5.0331 -6.4472 7.2341 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.3204 -1.0447 -4.1563 33 1 3.7551 1.5938 -2.1982 34 1 2.6984 1.5140 -3.6283 35 1 2.0048 1.8688 -2.0279 36 1 3.9190 0.1806 1.4087 37 1 3.8055 -1.5143 1.9401 38 1 3.8179 -1.1252 0.2032 39 1 2.1419 0.8710 2.5974 40 1 0.5004 0.2485 2.3040 41 1 0.0936 -0.0686 4.7258 42 1 1.2531 -0.9848 5.7182 43 1 1.7036 0.6092 5.0673 44 1 3.7962 -0.6774 3.5084 45 1 5.4235 -2.8221 3.6310 46 1 5.3867 -2.0205 5.2198 47 1 9.1180 -6.5257 6.5845 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498226495.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:12 Heat of formation + Delta-G solvation = 38.294736 kcal Electronic energy + Delta-G solvation = -27813.854921 eV Core-core repulsion = 23966.339863 eV Total energy + Delta-G solvation = -3847.515058 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.11025 -41.01573 -39.21139 -36.42508 -35.85666 -34.68292 -33.11339 -32.49838 -30.76620 -30.06476 -28.46720 -27.86044 -27.78618 -25.76571 -24.16318 -23.26693 -22.28367 -21.58130 -20.84710 -19.87765 -18.15221 -17.95120 -17.55432 -17.43743 -17.08812 -16.77640 -16.58431 -16.19683 -15.88983 -15.76049 -15.47742 -14.97960 -14.77156 -14.51388 -14.33402 -14.10332 -13.95810 -13.66156 -13.52055 -13.35171 -13.23570 -13.13093 -13.01335 -12.88718 -12.66240 -12.60141 -12.48002 -12.45457 -12.09152 -11.86896 -11.83030 -11.24452 -11.18224 -11.06657 -10.91407 -10.53682 -10.24496 -9.99470 -9.26290 -8.99843 -8.52904 -6.22935 0.85318 0.98632 1.30820 1.46226 1.55666 1.57161 1.63007 1.92905 2.23279 2.29214 2.72259 2.78249 2.85491 3.20839 3.71836 3.76192 3.88447 3.93016 4.00234 4.04448 4.15780 4.20073 4.33689 4.36500 4.40191 4.41214 4.43469 4.51396 4.63478 4.66867 4.69045 4.71636 4.83762 4.89714 4.98316 5.01293 5.15005 5.20074 5.30888 5.34577 5.57069 5.69660 5.93746 5.98743 6.09238 6.09744 6.48809 6.92620 7.25788 7.82184 8.59664 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.002640 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.401097 B =10602.843647 C =11848.608148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.175 3.825 3 H 0.090 0.910 4 C 0.179 3.821 5 N -0.323 5.323 6 N -0.360 5.360 7 C 0.158 3.842 8 N -0.475 5.475 9 C 0.061 3.939 10 N -0.544 5.544 11 C 0.019 3.981 12 C 0.054 3.946 13 C 0.146 3.854 14 H 0.064 0.936 15 C -0.155 4.155 16 N -0.705 5.705 17 C 0.535 3.465 18 O -0.561 6.561 19 C -0.111 4.111 20 S -0.176 6.176 21 C -0.528 4.528 22 H 0.062 0.938 23 C 0.046 3.954 24 N -0.917 5.917 25 Si 0.914 3.086 26 H -0.265 1.265 27 H -0.256 1.256 28 H -0.237 1.237 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.257 0.743 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.121 0.879 41 H 0.089 0.911 42 H 0.033 0.967 43 H 0.076 0.924 44 H 0.411 0.589 45 H 0.105 0.895 46 H 0.114 0.886 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.687 27.236 -18.351 36.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.065 3.935 3 H 0.108 0.892 4 C -0.091 4.091 5 N -0.162 5.162 6 N -0.199 5.199 7 C -0.131 4.131 8 N -0.166 5.166 9 C -0.080 4.080 10 N -0.270 5.270 11 C -0.129 4.129 12 C -0.073 4.073 13 C 0.041 3.959 14 H 0.082 0.918 15 C -0.214 4.214 16 N -0.360 5.360 17 C 0.320 3.680 18 O -0.439 6.439 19 C -0.262 4.262 20 S 0.050 5.950 21 C -0.675 4.675 22 H 0.080 0.920 23 C -0.160 4.160 24 N -0.555 5.555 25 Si 0.735 3.265 26 H -0.190 1.190 27 H -0.181 1.181 28 H -0.161 1.161 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.273 0.727 33 H 0.111 0.889 34 H 0.137 0.863 35 H 0.126 0.874 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.138 0.862 41 H 0.108 0.892 42 H 0.052 0.948 43 H 0.095 0.905 44 H 0.250 0.750 45 H 0.123 0.877 46 H 0.132 0.868 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.338 23.958 -17.490 34.873 hybrid contribution 2.376 1.874 -0.656 3.096 sum -15.962 25.831 -18.146 35.374 Atomic orbital electron populations 1.21920 0.91146 1.02885 1.03937 1.20021 0.96807 0.94042 0.82676 0.89246 1.24965 1.00993 0.90600 0.92529 1.74279 1.18577 1.13362 1.09994 1.74242 1.16634 1.25889 1.03087 1.27192 1.02603 0.82920 1.00372 1.46490 1.45408 1.11024 1.13633 1.22546 1.04977 0.73864 1.06571 1.61661 1.10714 1.53107 1.01496 1.22664 0.87276 1.01239 1.01733 1.22613 1.03845 0.94413 0.86417 1.21082 0.80702 0.98879 0.95214 0.91786 1.22088 1.02640 1.00609 0.96033 1.46135 1.09454 1.19885 1.60504 1.19868 0.89353 0.81804 0.76955 1.90685 1.52546 1.49967 1.50699 1.23282 0.97072 1.00691 1.05163 1.84745 1.07833 1.24381 1.78006 1.22457 0.90398 1.09069 1.45592 0.92008 1.25555 0.95969 0.99815 0.94623 1.70013 1.10566 1.30786 1.44162 0.85879 0.80810 0.80063 0.79700 1.18976 1.18060 1.16053 0.90670 0.93424 0.88513 0.72706 0.88865 0.86267 0.87449 0.92707 0.91337 0.94333 0.90963 0.86162 0.89210 0.94781 0.90535 0.75046 0.87677 0.86785 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.00 71.98 0.65 -0.86 16 2 C 0.17 2.26 2.38 44.17 0.11 2.37 16 3 H 0.09 0.52 7.23 -2.38 -0.02 0.50 16 4 C 0.18 3.46 5.03 137.98 0.69 4.15 16 5 N -0.32 -9.72 12.04 -50.15 -0.60 -10.33 16 6 N -0.36 -10.26 12.21 -59.99 -0.73 -11.00 16 7 C 0.16 2.56 12.74 180.11 2.30 4.86 16 8 N -0.47 -5.87 3.15 -542.08 -1.71 -7.58 16 9 C 0.06 0.02 10.84 127.77 1.38 1.41 16 10 N -0.54 -9.64 4.57 -901.47 -4.12 -13.76 16 11 C 0.02 0.38 8.21 127.69 1.05 1.43 16 12 C 0.05 0.65 4.60 86.30 0.40 1.05 16 13 C 0.15 2.96 2.83 44.99 0.13 3.09 16 14 H 0.06 1.82 7.55 -2.39 -0.02 1.80 16 15 C -0.16 -2.63 9.49 71.98 0.68 -1.95 16 16 N -0.70 -17.02 3.00 -442.52 -1.33 -18.35 16 17 C 0.53 19.29 7.67 87.66 0.67 19.97 16 18 O -0.56 -25.26 15.51 -3.04 -0.05 -25.30 16 19 C -0.11 -4.40 6.16 71.24 0.44 -3.96 16 20 S -0.18 -9.30 18.55 -56.49 -1.05 -10.35 16 21 C -0.53 -31.67 10.04 67.96 0.68 -30.99 16 22 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 23 C 0.05 2.76 5.50 84.86 0.47 3.23 16 24 N -0.92 -57.15 13.97 21.65 0.30 -56.85 16 25 Si 0.91 46.62 27.74 68.60 1.90 48.52 16 26 H -0.26 -13.34 7.11 99.48 0.71 -12.63 16 27 H -0.26 -12.16 7.11 99.48 0.71 -11.46 16 28 H -0.24 -12.07 6.74 99.48 0.67 -11.40 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.10 0.53 6.08 -2.38 -0.01 0.51 16 32 H 0.26 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.12 -0.51 8.14 -2.39 -0.02 -0.53 16 35 H 0.11 -0.31 7.46 -2.39 -0.02 -0.32 16 36 H 0.05 0.70 7.87 -2.39 -0.02 0.68 16 37 H 0.07 1.67 5.29 -2.39 -0.01 1.66 16 38 H 0.04 0.94 6.38 -2.38 -0.02 0.93 16 39 H 0.07 0.49 7.86 -2.39 -0.02 0.48 16 40 H 0.12 0.90 5.59 -2.39 -0.01 0.88 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.41 7.42 6.82 -92.71 -0.63 6.78 16 45 H 0.10 3.94 8.14 -2.40 -0.02 3.92 16 46 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 47 H 0.28 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -93.32 391.99 2.58 -90.74 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 0.31 Total: 10.45 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 9.64 Total: 3.79 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -8.19 Total: -117.85 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.05 Total: -25.30 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.90 Total: 48.52 kcal Atomic # 16 Polarization: -9.30 SS G_CDS: -1.05 Total: -10.35 kcal Total: -93.32 2.58 -90.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498226495.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.035 kcal (2) G-P(sol) polarization free energy of solvation -93.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds