Wall clock time and date at job start Sat Apr 11 2020 06:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.41911 * 2 1 4 4 C 1.54478 * 110.36801 * 122.31609 * 2 1 3 5 5 C 1.54512 * 104.06265 * 142.81107 * 4 2 1 6 6 H 1.08993 * 110.51449 * 118.77486 * 5 4 2 7 7 C 1.50695 * 110.50822 * 241.35336 * 5 4 2 8 8 O 1.21286 * 120.00058 * 359.97438 * 7 5 4 9 9 N 1.34779 * 119.99897 * 179.97438 * 7 5 4 10 10 C 1.46507 * 119.99843 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.46887 * 179.97438 * 10 9 7 12 12 O 1.42905 * 113.01093 * 311.63657 * 11 10 9 13 13 C 1.53932 * 113.73480 * 83.26963 * 11 10 9 14 14 N 1.47958 * 86.18213 * 138.08000 * 13 11 10 15 15 C 1.46904 * 111.00220 * 222.41826 * 14 13 11 16 16 C 1.50695 * 109.47252 * 269.35925 * 15 14 13 17 17 O 1.21301 * 119.99830 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00118 * 180.02562 * 16 15 14 19 19 C 1.37103 * 120.00172 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99823 * 0.02562 * 19 18 16 21 21 C 1.38945 * 119.99900 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00544 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99692 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47148 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47026 * 120.00069 * 23 21 19 26 26 H 1.48498 * 109.47139 * 239.99887 * 23 21 19 27 27 C 1.47960 * 90.76300 * 335.31020 * 14 13 11 28 28 C 1.54486 * 104.06032 * 359.97438 * 5 4 2 29 29 O 1.44428 * 110.36704 * 237.69253 * 2 1 3 30 30 H 1.09004 * 109.47302 * 297.68925 * 1 2 3 31 31 H 1.09004 * 109.47383 * 57.68469 * 1 2 3 32 32 H 1.08998 * 109.47967 * 177.68746 * 1 2 3 33 33 H 1.08997 * 110.51419 * 24.15907 * 4 2 1 34 34 H 1.09005 * 110.50519 * 261.44695 * 4 2 1 35 35 H 0.96994 * 120.00200 * 359.97438 * 9 7 5 36 36 H 1.08997 * 109.47177 * 59.99860 * 10 9 7 37 37 H 1.08996 * 109.47077 * 299.99400 * 10 9 7 38 38 H 0.96692 * 114.00071 * 48.35573 * 12 11 10 39 39 H 1.09001 * 113.75926 * 252.39599 * 13 11 10 40 40 H 1.08998 * 113.76352 * 23.75953 * 13 11 10 41 41 H 1.09003 * 109.46785 * 29.35722 * 15 14 13 42 42 H 1.08999 * 109.46834 * 149.35463 * 15 14 13 43 43 H 0.96996 * 120.00258 * 359.97438 * 18 16 15 44 44 H 0.96997 * 120.00518 * 179.97438 * 22 21 19 45 45 H 1.09001 * 113.75911 * 270.37393 * 27 14 13 46 46 H 1.09004 * 113.76293 * 139.00416 * 27 14 13 47 47 H 1.08993 * 110.37179 * 94.85328 * 28 5 4 48 48 H 1.09003 * 110.36688 * 217.19213 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0677 -0.7742 1.2239 5 6 3.3177 -1.5058 0.6858 6 1 4.2105 -1.1792 1.2190 7 6 3.1486 -2.9984 0.8063 8 8 2.1294 -3.4572 1.2772 9 7 4.1300 -3.8235 0.3909 10 6 3.9658 -5.2746 0.5086 11 6 5.2145 -5.9745 -0.0314 12 8 5.6237 -5.4805 -1.3084 13 6 6.3609 -6.0726 0.9912 14 7 6.5555 -7.4519 0.4924 15 6 6.7953 -8.3841 1.6022 16 6 8.2757 -8.4800 1.8668 17 8 9.0546 -7.8354 1.1966 18 7 8.7343 -9.2826 2.8476 19 6 10.0813 -9.3702 3.0880 20 1 10.7747 -8.7957 2.4918 21 6 10.5540 -10.1973 4.0995 22 7 9.7103 -10.8951 4.8260 23 14 12.3892 -10.3160 4.4275 24 1 13.1195 -9.4371 3.4792 25 1 12.6719 -9.8854 5.8203 26 1 12.8351 -11.7205 4.2435 27 6 5.1461 -7.5104 0.0458 28 6 3.3870 -1.0876 -0.7997 29 8 2.0327 -0.7237 -1.1444 30 1 -0.3634 0.4775 0.9100 31 1 -0.3634 0.5494 -0.8685 32 1 -0.3635 -1.0268 -0.0415 33 1 1.3274 -1.4920 1.5771 34 1 2.3429 -0.0841 2.0215 35 1 4.9449 -3.4566 0.0139 36 1 3.0955 -5.5896 -0.0671 37 1 3.8242 -5.5404 1.5561 38 1 5.6679 -4.5160 -1.3613 39 1 7.1972 -5.4067 0.7786 40 1 6.0296 -6.0233 2.0284 41 1 6.2889 -8.0218 2.4968 42 1 6.4086 -9.3688 1.3394 43 1 8.1116 -9.7983 3.3833 44 1 10.0403 -11.4728 5.5318 45 1 4.4595 -7.8817 0.8066 46 1 5.0118 -7.9933 -0.9222 47 1 4.0519 -0.2328 -0.9226 48 1 3.7238 -1.9229 -1.4137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500869379.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:22 Heat of formation + Delta-G solvation = -121.849646 kcal Electronic energy + Delta-G solvation = -29691.269036 eV Core-core repulsion = 25361.763974 eV Total energy + Delta-G solvation = -4329.505061 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.09509 -40.41006 -38.82225 -37.91109 -35.98648 -34.61481 -33.87157 -32.80791 -32.27235 -31.27227 -30.28458 -27.72161 -26.38747 -26.26441 -25.00408 -23.80340 -22.41723 -21.57411 -20.64564 -20.06842 -19.21139 -18.20175 -17.83278 -17.25689 -16.74533 -16.51969 -16.06616 -15.92903 -15.60413 -15.51197 -15.38673 -14.92598 -14.61471 -14.22029 -14.15052 -13.71630 -13.69691 -13.45901 -13.13743 -13.08580 -12.77040 -12.69816 -12.39943 -12.24080 -12.14059 -11.98134 -11.74114 -11.60406 -11.50663 -11.29197 -11.24519 -11.02713 -10.84641 -10.45483 -10.34461 -10.22811 -10.05690 -10.01064 -9.53835 -9.50738 -8.75204 -8.18524 -7.95609 -6.41370 -3.82106 2.19532 2.60803 3.16155 3.26550 3.33852 3.38989 3.59031 3.87055 3.89117 3.92106 4.07825 4.20385 4.21723 4.34909 4.44667 4.49032 4.64224 4.82294 4.83972 4.94230 4.98267 5.07068 5.10474 5.19834 5.23175 5.27546 5.31526 5.32446 5.40744 5.48547 5.53014 5.61634 5.68468 5.68879 5.75917 5.78630 5.92084 5.98580 6.25519 6.34874 6.52299 6.95359 7.08639 7.33772 7.55658 7.77168 8.06764 8.62706 9.19077 9.55229 10.07676 10.76599 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.024008 B = 0.001798 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.984202 B =15569.405298 C =15819.169244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 H 0.071 0.929 4 C -0.144 4.144 5 C -0.149 4.149 6 H 0.114 0.886 7 C 0.526 3.474 8 O -0.529 6.529 9 N -0.729 5.729 10 C 0.101 3.899 11 C 0.091 3.909 12 O -0.518 6.518 13 C -0.012 4.012 14 N -0.436 5.436 15 C 0.007 3.993 16 C 0.446 3.554 17 O -0.574 6.574 18 N -0.567 5.567 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.017 3.983 28 C 0.056 3.944 29 O -0.367 6.367 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.398 0.602 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.369 0.631 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.391 0.609 44 H 0.270 0.730 45 H 0.084 0.916 46 H 0.102 0.898 47 H 0.074 0.926 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.632 20.205 -7.140 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 H 0.088 0.912 4 C -0.181 4.181 5 C -0.171 4.171 6 H 0.132 0.868 7 C 0.312 3.688 8 O -0.405 6.405 9 N -0.383 5.383 10 C -0.024 4.024 11 C 0.049 3.951 12 O -0.322 6.322 13 C -0.141 4.141 14 N -0.158 5.158 15 C -0.125 4.125 16 C 0.231 3.769 17 O -0.457 6.457 18 N -0.205 5.205 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.112 4.112 28 C -0.021 4.021 29 O -0.286 6.286 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.233 0.767 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.216 0.784 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.108 0.892 43 H 0.224 0.776 44 H 0.080 0.920 45 H 0.102 0.898 46 H 0.120 0.880 47 H 0.092 0.908 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.347 19.302 -7.884 27.123 hybrid contribution 0.567 0.307 1.529 1.659 sum -16.780 19.610 -6.355 26.580 Atomic orbital electron populations 1.21802 0.92896 1.03360 1.02405 1.23047 0.95804 0.95170 0.84687 0.91154 1.23093 0.96823 0.99870 0.98363 1.22749 1.02023 0.92816 0.99476 0.86789 1.20274 0.82886 0.88547 0.77060 1.90699 1.28176 1.77519 1.44091 1.45876 1.20322 1.06887 1.65169 1.22069 0.98580 0.79253 1.02451 1.22995 0.91855 0.95418 0.84868 1.86688 1.90099 1.25375 1.30078 1.24719 0.98287 0.93971 0.97109 1.68449 1.18936 1.01289 1.27084 1.22532 0.97670 0.98579 0.93746 1.19654 0.88888 0.84525 0.83790 1.90530 1.57375 1.47599 1.50225 1.41880 1.08372 1.39724 1.30499 1.19746 0.82797 1.24500 1.15665 0.87911 1.25252 1.00239 0.96333 0.96196 1.69616 1.34780 1.28386 1.21672 0.85804 0.82291 0.78097 0.78178 1.19240 1.20804 1.20743 1.24134 0.91984 0.92282 1.02805 1.23370 0.85779 1.00601 0.92352 1.89187 1.26490 1.74555 1.38340 0.90997 0.91868 0.91435 0.87925 0.89883 0.76709 0.90109 0.89966 0.78373 0.88515 0.90654 0.92384 0.89180 0.77567 0.91963 0.89840 0.88018 0.90810 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.52 37.16 0.35 -0.59 16 2 C 0.07 0.49 3.92 -25.96 -0.10 0.38 16 3 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 4 C -0.14 -0.99 6.21 -25.16 -0.16 -1.14 16 5 C -0.15 -0.95 3.51 -90.20 -0.32 -1.26 16 6 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 7 C 0.53 4.89 7.07 -10.99 -0.08 4.82 16 8 O -0.53 -7.05 15.28 5.55 0.08 -6.97 16 9 N -0.73 -5.46 5.15 -60.29 -0.31 -5.77 16 10 C 0.10 0.92 5.35 -4.04 -0.02 0.90 16 11 C 0.09 0.98 1.59 -89.69 -0.14 0.83 16 12 O -0.52 -5.74 13.51 -35.23 -0.48 -6.22 16 13 C -0.01 -0.16 7.34 -2.77 -0.02 -0.18 16 14 N -0.44 -7.18 5.65 -239.64 -1.35 -8.54 16 15 C 0.01 0.12 5.28 -4.98 -0.03 0.09 16 16 C 0.45 10.69 7.83 -10.99 -0.09 10.60 16 17 O -0.57 -15.97 16.01 5.54 0.09 -15.88 16 18 N -0.57 -14.49 5.29 -10.97 -0.06 -14.55 16 19 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 23 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 C 0.02 0.21 7.35 -2.77 -0.02 0.19 16 28 C 0.06 0.34 7.17 37.94 0.27 0.61 16 29 O -0.37 -3.31 11.34 -35.23 -0.40 -3.71 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.95 6.23 -51.93 -0.32 0.62 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.40 1.92 7.02 -40.82 -0.29 1.63 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.80 7.94 -51.93 -0.41 0.38 16 38 H 0.37 2.46 7.28 45.56 0.33 2.79 16 39 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 40 H 0.08 0.94 7.29 -51.93 -0.38 0.56 16 41 H 0.06 0.89 7.38 -51.93 -0.38 0.51 16 42 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 43 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.08 0.83 7.88 -51.93 -0.41 0.42 16 46 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.10 0.50 7.71 -51.93 -0.40 0.10 16 LS Contribution 395.07 15.07 5.95 5.95 Total: -1.00 -37.17 395.07 -8.10 -45.27 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -6.74 Total: 11.00 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -0.59 Total: 7.21 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -1.00 Total: -52.79 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.70 Total: -32.78 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.17 -8.10 -45.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500869379.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.578 kcal (2) G-P(sol) polarization free energy of solvation -37.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds