Wall clock time and date at job start Sat Apr 11 2020 06:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.41911 * 2 1 4 4 C 1.54478 * 110.36801 * 122.31609 * 2 1 3 5 5 C 1.54512 * 104.06265 * 142.81107 * 4 2 1 6 6 H 1.08993 * 110.51449 * 118.77486 * 5 4 2 7 7 C 1.50695 * 110.50822 * 241.35336 * 5 4 2 8 8 O 1.21286 * 120.00058 * 359.97438 * 7 5 4 9 9 N 1.34779 * 119.99897 * 179.97438 * 7 5 4 10 10 C 1.46507 * 119.99843 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.46887 * 179.97438 * 10 9 7 12 12 O 1.42905 * 113.01093 * 311.63657 * 11 10 9 13 13 C 1.53932 * 113.73480 * 83.26963 * 11 10 9 14 14 N 1.47958 * 86.18213 * 138.08000 * 13 11 10 15 15 C 1.46904 * 111.00220 * 222.41826 * 14 13 11 16 16 C 1.50695 * 109.47252 * 269.35925 * 15 14 13 17 17 O 1.21301 * 119.99830 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00118 * 180.02562 * 16 15 14 19 19 C 1.37103 * 120.00172 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99823 * 0.02562 * 19 18 16 21 21 C 1.38945 * 119.99900 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00544 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99692 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47148 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47026 * 120.00069 * 23 21 19 26 26 H 1.48498 * 109.47139 * 239.99887 * 23 21 19 27 27 C 1.47960 * 90.76300 * 335.31020 * 14 13 11 28 28 C 1.54486 * 104.06032 * 359.97438 * 5 4 2 29 29 O 1.44428 * 110.36704 * 237.69253 * 2 1 3 30 30 H 1.09004 * 109.47302 * 297.68925 * 1 2 3 31 31 H 1.09004 * 109.47383 * 57.68469 * 1 2 3 32 32 H 1.08998 * 109.47967 * 177.68746 * 1 2 3 33 33 H 1.08997 * 110.51419 * 24.15907 * 4 2 1 34 34 H 1.09005 * 110.50519 * 261.44695 * 4 2 1 35 35 H 0.96994 * 120.00200 * 359.97438 * 9 7 5 36 36 H 1.08997 * 109.47177 * 59.99860 * 10 9 7 37 37 H 1.08996 * 109.47077 * 299.99400 * 10 9 7 38 38 H 0.96692 * 114.00071 * 48.35573 * 12 11 10 39 39 H 1.09001 * 113.75926 * 252.39599 * 13 11 10 40 40 H 1.08998 * 113.76352 * 23.75953 * 13 11 10 41 41 H 1.09003 * 109.46785 * 29.35722 * 15 14 13 42 42 H 1.08999 * 109.46834 * 149.35463 * 15 14 13 43 43 H 0.96996 * 120.00258 * 359.97438 * 18 16 15 44 44 H 0.96997 * 120.00518 * 179.97438 * 22 21 19 45 45 H 1.09001 * 113.75911 * 270.37393 * 27 14 13 46 46 H 1.09004 * 113.76293 * 139.00416 * 27 14 13 47 47 H 1.08993 * 110.37179 * 94.85328 * 28 5 4 48 48 H 1.09003 * 110.36688 * 217.19213 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0677 -0.7742 1.2239 5 6 3.3177 -1.5058 0.6858 6 1 4.2105 -1.1792 1.2190 7 6 3.1486 -2.9984 0.8063 8 8 2.1294 -3.4572 1.2772 9 7 4.1300 -3.8235 0.3909 10 6 3.9658 -5.2746 0.5086 11 6 5.2145 -5.9745 -0.0314 12 8 5.6237 -5.4805 -1.3084 13 6 6.3609 -6.0726 0.9912 14 7 6.5555 -7.4519 0.4924 15 6 6.7953 -8.3841 1.6022 16 6 8.2757 -8.4800 1.8668 17 8 9.0546 -7.8354 1.1966 18 7 8.7343 -9.2826 2.8476 19 6 10.0813 -9.3702 3.0880 20 1 10.7747 -8.7957 2.4918 21 6 10.5540 -10.1973 4.0995 22 7 9.7103 -10.8951 4.8260 23 14 12.3892 -10.3160 4.4275 24 1 13.1195 -9.4371 3.4792 25 1 12.6719 -9.8854 5.8203 26 1 12.8351 -11.7205 4.2435 27 6 5.1461 -7.5104 0.0458 28 6 3.3870 -1.0876 -0.7997 29 8 2.0327 -0.7237 -1.1444 30 1 -0.3634 0.4775 0.9100 31 1 -0.3634 0.5494 -0.8685 32 1 -0.3635 -1.0268 -0.0415 33 1 1.3274 -1.4920 1.5771 34 1 2.3429 -0.0841 2.0215 35 1 4.9449 -3.4566 0.0139 36 1 3.0955 -5.5896 -0.0671 37 1 3.8242 -5.5404 1.5561 38 1 5.6679 -4.5160 -1.3613 39 1 7.1972 -5.4067 0.7786 40 1 6.0296 -6.0233 2.0284 41 1 6.2889 -8.0218 2.4968 42 1 6.4086 -9.3688 1.3394 43 1 8.1116 -9.7983 3.3833 44 1 10.0403 -11.4728 5.5318 45 1 4.4595 -7.8817 0.8066 46 1 5.0118 -7.9933 -0.9222 47 1 4.0519 -0.2328 -0.9226 48 1 3.7238 -1.9229 -1.4137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500869379.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:21 Heat of formation + Delta-G solvation = -155.740035 kcal Electronic energy + Delta-G solvation = -29692.738633 eV Core-core repulsion = 25361.763974 eV Total energy + Delta-G solvation = -4330.974659 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.91215 -41.26347 -39.85549 -39.37411 -37.01992 -35.90460 -35.39660 -33.37862 -33.29438 -32.79444 -31.46737 -28.80647 -27.30052 -27.03031 -26.61905 -24.67717 -23.47095 -22.11715 -21.32624 -21.07973 -20.89271 -19.89776 -18.85095 -17.89658 -17.79777 -17.47366 -17.22566 -16.73041 -16.66440 -16.51881 -16.40621 -16.16771 -15.74854 -15.60806 -15.29976 -15.05190 -14.68682 -14.44862 -14.15671 -14.04100 -13.65021 -13.59597 -13.42921 -13.25804 -13.21677 -13.01622 -12.94192 -12.73498 -12.41752 -12.34192 -12.24062 -12.13366 -12.12740 -11.85132 -11.75942 -11.51369 -11.12838 -10.98045 -10.61466 -10.39834 -10.25817 -10.01580 -9.64914 -8.47481 -5.96256 1.35691 1.40783 1.50874 1.55035 1.95257 2.05145 2.27675 2.64141 2.90946 2.92798 3.18315 3.21148 3.37102 3.38828 3.54005 3.68787 3.87098 4.00917 4.03251 4.17977 4.19476 4.23413 4.37250 4.38069 4.44634 4.48411 4.54591 4.57745 4.58878 4.64780 4.70544 4.77008 4.81559 4.88064 4.93365 4.97827 5.13925 5.23395 5.31737 5.38124 5.40799 5.84680 5.88073 6.05540 6.35386 6.60213 6.67137 7.11453 7.12684 7.56107 8.12737 8.70159 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.024008 B = 0.001798 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.984202 B =15569.405298 C =15819.169244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.067 3.933 3 H 0.092 0.908 4 C -0.145 4.145 5 C -0.144 4.144 6 H 0.145 0.855 7 C 0.522 3.478 8 O -0.575 6.575 9 N -0.718 5.718 10 C 0.111 3.889 11 C 0.116 3.884 12 O -0.535 6.535 13 C -0.015 4.015 14 N -0.477 5.477 15 C 0.020 3.980 16 C 0.442 3.558 17 O -0.619 6.619 18 N -0.576 5.576 19 C -0.333 4.333 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.271 1.271 27 C 0.018 3.982 28 C 0.054 3.946 29 O -0.398 6.398 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.412 0.588 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.387 0.613 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.111 0.889 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.757 21.283 -6.802 28.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.010 3.990 3 H 0.110 0.890 4 C -0.183 4.183 5 C -0.165 4.165 6 H 0.162 0.838 7 C 0.310 3.690 8 O -0.454 6.454 9 N -0.372 5.372 10 C -0.014 4.014 11 C 0.073 3.927 12 O -0.342 6.342 13 C -0.144 4.144 14 N -0.200 5.200 15 C -0.111 4.111 16 C 0.229 3.771 17 O -0.505 6.505 18 N -0.214 5.214 19 C -0.463 4.463 20 H 0.095 0.905 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.110 4.110 28 C -0.023 4.023 29 O -0.318 6.318 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.250 0.750 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.238 0.762 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.127 0.873 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.129 0.871 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.475 20.392 -7.555 27.898 hybrid contribution 0.590 -0.006 1.369 1.491 sum -16.885 20.386 -6.186 27.184 Atomic orbital electron populations 1.21824 0.93196 1.02138 1.03357 1.23207 0.95781 0.95968 0.84090 0.89048 1.23089 0.96424 0.99724 0.99036 1.22820 1.03000 0.90375 1.00306 0.83758 1.20846 0.82216 0.89901 0.76068 1.90686 1.30005 1.78486 1.46251 1.45774 1.20670 1.06194 1.64537 1.21863 0.97331 0.80014 1.02156 1.22644 0.91150 0.94882 0.84002 1.86651 1.90131 1.27354 1.30107 1.24772 0.98806 0.92330 0.98534 1.68382 1.22214 1.02268 1.27090 1.22404 0.92687 1.00397 0.95639 1.20804 0.91561 0.82629 0.82119 1.90491 1.59508 1.48996 1.51465 1.41954 1.07713 1.40426 1.31275 1.19684 0.83938 1.25853 1.16790 0.90512 1.26029 1.04517 0.95374 0.95362 1.69671 1.36434 1.28321 1.21742 0.84873 0.76980 0.78281 0.78208 1.19896 1.19478 1.19618 1.24255 0.90007 0.93404 1.03375 1.23578 0.85038 1.01874 0.91836 1.89154 1.28133 1.75090 1.39450 0.89389 0.91646 0.93638 0.90719 0.87707 0.74998 0.90408 0.90055 0.76228 0.90281 0.89513 0.89740 0.87347 0.77022 0.91312 0.87112 0.88175 0.88115 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.52 71.98 0.68 -1.16 16 2 C 0.07 0.83 3.92 31.10 0.12 0.95 16 3 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 4 C -0.14 -1.79 6.21 31.61 0.20 -1.60 16 5 C -0.14 -1.52 3.51 -10.52 -0.04 -1.56 16 6 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 7 C 0.52 9.06 7.07 87.66 0.62 9.68 16 8 O -0.58 -15.28 15.28 -3.05 -0.05 -15.33 16 9 N -0.72 -9.47 5.15 -463.05 -2.39 -11.85 16 10 C 0.11 1.84 5.35 86.38 0.46 2.30 16 11 C 0.12 2.29 1.59 -10.15 -0.02 2.27 16 12 O -0.54 -11.01 13.51 -148.98 -2.01 -13.02 16 13 C -0.02 -0.40 7.34 86.40 0.63 0.24 16 14 N -0.48 -15.26 5.65 -915.31 -5.17 -20.43 16 15 C 0.02 0.69 5.28 85.55 0.45 1.15 16 16 C 0.44 21.40 7.83 87.66 0.69 22.08 16 17 O -0.62 -35.37 16.01 -3.09 -0.05 -35.42 16 18 N -0.58 -29.86 5.29 -306.99 -1.62 -31.48 16 19 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 20 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 21 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 22 N -0.92 -49.80 13.05 21.66 0.28 -49.52 16 23 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 C 0.02 0.41 7.35 86.41 0.64 1.04 16 28 C 0.05 0.52 7.17 72.49 0.52 1.04 16 29 O -0.40 -6.74 11.34 -148.98 -1.69 -8.43 16 30 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 1.39 6.23 -2.39 -0.01 1.38 16 34 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.41 3.01 7.02 -92.71 -0.65 2.36 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 1.42 7.94 -2.39 -0.02 1.40 16 38 H 0.39 4.40 7.28 -74.06 -0.54 3.86 16 39 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.09 2.02 7.29 -2.39 -0.02 2.01 16 41 H 0.08 2.42 7.38 -2.39 -0.02 2.40 16 42 H 0.11 3.27 8.08 -2.39 -0.02 3.25 16 43 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 44 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 45 H 0.11 1.87 7.88 -2.39 -0.02 1.85 16 46 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 47 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 48 H 0.10 0.83 7.71 -2.39 -0.02 0.81 16 Total: -1.00 -82.91 395.07 -5.34 -88.25 By element: Atomic # 1 Polarization: 35.09 SS G_CDS: -0.91 Total: 34.17 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 6.24 Total: 17.85 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -8.90 Total: -113.28 kcal Atomic # 8 Polarization: -68.40 SS G_CDS: -3.80 Total: -72.20 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -82.91 -5.34 -88.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500869379.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.491 kcal (2) G-P(sol) polarization free energy of solvation -82.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds