Wall clock time and date at job start Sat Apr 11 2020 06:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47290 * 2 1 4 4 C 1.52999 * 109.47316 * 120.00283 * 2 1 3 5 5 N 1.46496 * 109.47060 * 294.99844 * 4 2 1 6 6 C 1.34771 * 120.00172 * 179.97438 * 5 4 2 7 7 O 1.21285 * 120.00169 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00333 * 180.02562 * 6 5 4 9 9 S 1.80995 * 109.47328 * 180.02562 * 8 6 5 10 10 C 1.76202 * 99.99959 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00115 * 359.97438 * 10 9 8 12 12 C 1.38803 * 120.00021 * 180.02562 * 10 9 8 13 13 N 1.31630 * 119.99986 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99966 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47113 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47047 * 119.99527 * 14 12 10 17 17 H 1.48500 * 109.46943 * 239.99580 * 14 12 10 18 18 C 1.53004 * 109.47245 * 240.00131 * 2 1 3 19 19 N 1.46901 * 109.46916 * 64.99745 * 18 2 1 20 20 C 1.46905 * 110.99870 * 180.02562 * 19 18 2 21 21 H 1.09004 * 109.46962 * 34.99990 * 20 19 18 22 22 C 1.52999 * 109.47094 * 274.99984 * 20 19 18 23 23 C 1.50696 * 109.47161 * 155.00107 * 20 19 18 24 24 N 1.30521 * 126.34509 * 45.02348 * 23 20 19 25 25 N 1.28592 * 109.67387 * 179.97438 * 24 23 20 26 26 C 1.30523 * 109.67369 * 0.02562 * 25 24 23 27 27 N 1.35491 * 126.34867 * 224.71250 * 23 20 19 28 28 C 1.46500 * 126.98048 * 0.03996 * 27 23 20 29 29 H 1.09007 * 109.46679 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46950 * 299.99341 * 1 2 3 31 31 H 1.08997 * 109.47303 * 60.00055 * 1 2 3 32 32 H 1.08996 * 109.47107 * 55.00079 * 4 2 1 33 33 H 1.09000 * 109.47382 * 175.00077 * 4 2 1 34 34 H 0.97007 * 120.00066 * 0.02562 * 5 4 2 35 35 H 1.09004 * 109.46509 * 300.00204 * 8 6 5 36 36 H 1.09000 * 109.47393 * 59.99870 * 8 6 5 37 37 H 0.96996 * 120.00039 * 180.02562 * 13 12 10 38 38 H 1.09004 * 109.46889 * 305.00126 * 18 2 1 39 39 H 1.08995 * 109.47384 * 184.99766 * 18 2 1 40 40 H 1.00901 * 111.00067 * 303.95263 * 19 18 2 41 41 H 1.08997 * 109.47624 * 300.00377 * 22 20 19 42 42 H 1.09006 * 109.47163 * 60.00429 * 22 20 19 43 43 H 1.08999 * 109.47123 * 179.97438 * 22 20 19 44 44 H 1.08002 * 126.34806 * 180.02562 * 26 25 24 45 45 H 1.08995 * 109.47455 * 89.99581 * 28 27 23 46 46 H 1.08998 * 109.47428 * 210.00195 * 28 27 23 47 47 H 1.09007 * 109.46681 * 329.99858 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6526 0.0352 2.4423 6 6 1.9957 -0.4137 3.6659 7 8 2.6257 -1.4439 3.7792 8 6 1.5966 0.3642 4.8933 9 16 2.2000 -0.4889 6.3711 10 6 1.6107 0.6066 7.6190 11 1 1.0586 1.4928 7.3428 12 6 1.8569 0.3312 8.9570 13 7 2.5302 -0.7486 9.2936 14 14 1.2315 1.4923 10.2800 15 1 0.5089 2.6234 9.6446 16 1 0.3088 0.7606 11.1848 17 1 2.3800 2.0160 11.0622 18 6 2.0401 -0.7212 -1.2493 19 7 1.6514 0.0375 -2.4456 20 6 2.1248 -0.6271 -3.6673 21 1 2.0808 -1.7079 -3.5333 22 6 3.5684 -0.2065 -3.9499 23 6 1.2493 -0.2287 -4.8273 24 7 0.8414 0.9786 -5.1097 25 7 0.1116 0.9525 -6.1682 26 6 0.0203 -0.2727 -6.6089 27 7 0.7445 -1.0564 -5.7738 28 6 0.9388 -2.5051 -5.8721 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6055 -1.7198 1.2950 33 1 3.1264 -0.7995 1.2055 34 1 1.1483 0.8590 2.3518 35 1 2.0312 1.3628 4.8477 36 1 0.5102 0.4425 4.9367 37 1 2.7020 -0.9412 10.2286 38 1 1.6054 -1.7198 -1.2952 39 1 3.1263 -0.7994 -1.2057 40 1 0.6528 0.1793 -2.4753 41 1 3.6125 0.8743 -4.0838 42 1 4.2017 -0.4948 -3.1108 43 1 3.9198 -0.6999 -4.8561 44 1 -0.5267 -0.6003 -7.4806 45 1 0.1511 -3.0157 -5.3182 46 1 0.9010 -2.8066 -6.9188 47 1 1.9090 -2.7708 -5.4522 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753618848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:38 Heat of formation + Delta-G solvation = 37.195143 kcal Electronic energy + Delta-G solvation = -26119.481276 eV Core-core repulsion = 22271.918536 eV Total energy + Delta-G solvation = -3847.562740 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.61946 -39.36091 -38.13405 -35.98146 -35.45182 -33.21039 -32.41651 -30.96621 -29.70843 -29.06992 -28.26759 -26.92676 -25.56098 -25.08213 -23.53119 -22.71098 -20.77345 -20.55142 -20.19211 -17.93475 -17.72557 -16.92268 -16.71359 -16.35396 -16.20350 -15.65673 -15.51205 -15.02036 -14.79540 -14.73804 -14.35305 -14.03549 -13.95996 -13.72253 -13.54017 -13.29143 -13.01167 -12.90279 -12.73489 -12.55404 -12.33162 -12.10317 -11.89919 -11.70614 -11.34638 -11.14458 -11.06823 -11.05533 -11.00479 -10.77454 -10.74166 -10.73261 -9.79321 -9.72740 -9.38593 -9.06664 -8.97108 -8.84426 -8.21797 -6.48614 -6.20785 -3.91023 1.25195 1.86669 2.44418 3.03713 3.12761 3.22602 3.28715 3.33113 3.50400 3.61941 3.80428 3.94063 4.09016 4.21606 4.30205 4.34555 4.55766 4.58075 4.60655 4.62848 4.78725 4.91461 5.12274 5.13953 5.14585 5.17297 5.23672 5.32101 5.33399 5.41084 5.53429 5.60595 5.61630 5.68656 5.75148 5.83608 5.91518 5.98095 6.04214 6.16535 6.25298 6.47047 6.65693 6.84466 7.61225 7.73768 8.29195 8.36721 8.64099 9.24838 10.86736 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.033317 B = 0.001490 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.208005 B =18790.313305 C =19136.834151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 H 0.091 0.909 4 C 0.128 3.872 5 N -0.737 5.737 6 C 0.532 3.468 7 O -0.520 6.520 8 C -0.153 4.153 9 S -0.061 6.061 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.066 3.934 19 N -0.669 5.669 20 C 0.178 3.822 21 H 0.059 0.941 22 C -0.137 4.137 23 C 0.165 3.835 24 N -0.267 5.267 25 N -0.297 5.297 26 C 0.148 3.852 27 N -0.477 5.477 28 C 0.069 3.931 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.398 0.602 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.035 0.965 39 H 0.082 0.918 40 H 0.349 0.651 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.219 0.781 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.910 -3.677 -34.152 34.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.120 4.120 3 H 0.109 0.891 4 C 0.003 3.997 5 N -0.392 5.392 6 C 0.318 3.682 7 O -0.394 6.394 8 C -0.304 4.304 9 S 0.165 5.835 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.064 4.064 19 N -0.303 5.303 20 C 0.066 3.934 21 H 0.077 0.923 22 C -0.196 4.196 23 C -0.102 4.102 24 N -0.107 5.107 25 N -0.137 5.137 26 C -0.139 4.139 27 N -0.168 5.168 28 C -0.074 4.074 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.100 0.900 40 H 0.169 0.831 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.235 0.765 45 H 0.103 0.897 46 H 0.114 0.886 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.448 -3.618 -33.711 33.993 hybrid contribution -1.942 0.011 0.321 1.968 sum -4.390 -3.607 -33.390 33.870 Atomic orbital electron populations 1.21896 0.94801 1.02005 1.02253 1.21351 0.96335 1.01309 0.93014 0.89081 1.21222 1.00055 0.95188 0.83239 1.45979 1.59563 1.28148 1.05479 1.20298 0.78665 0.85450 0.83826 1.90697 1.38514 1.23942 1.86245 1.23532 1.04775 1.03497 0.98615 1.85380 1.72848 1.33030 0.92225 1.22920 1.41376 1.11229 0.92780 0.90858 1.24993 0.94857 0.95800 0.97940 1.70028 1.37605 1.24635 1.18059 0.86116 0.78578 0.80149 0.80649 1.19606 1.20583 1.20565 1.22014 1.01375 0.94330 0.88662 1.60503 1.20770 1.49275 0.99722 1.19788 0.93115 0.96175 0.84335 0.92303 1.21807 0.92764 1.03645 1.01363 1.24917 1.02061 0.87606 0.95666 1.74351 1.10426 1.17148 1.08772 1.74352 1.15367 1.17342 1.06591 1.26516 0.99793 0.88137 0.99438 1.46253 1.38248 1.10229 1.22106 1.22171 1.04281 0.75916 1.05078 0.92686 0.91916 0.92342 0.91774 0.91505 0.76752 0.89192 0.89263 0.92257 0.94700 0.90009 0.83056 0.90549 0.91064 0.92700 0.76463 0.89742 0.88604 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.84 37.16 0.33 -0.82 16 2 C -0.10 -0.79 2.63 -90.62 -0.24 -1.03 16 3 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 4 C 0.13 1.40 5.06 -4.04 -0.02 1.38 16 5 N -0.74 -9.64 5.28 -60.30 -0.32 -9.96 16 6 C 0.53 9.89 7.85 -10.99 -0.09 9.80 16 7 O -0.52 -11.79 15.86 5.55 0.09 -11.70 16 8 C -0.15 -3.11 6.16 36.01 0.22 -2.88 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 11 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 14 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.07 0.44 4.94 -3.82 -0.02 0.42 16 19 N -0.67 -4.90 6.30 -107.95 -0.68 -5.58 16 20 C 0.18 1.12 2.92 -68.86 -0.20 0.92 16 21 H 0.06 0.26 6.90 -51.93 -0.36 -0.10 16 22 C -0.14 -0.85 9.40 37.16 0.35 -0.50 16 23 C 0.17 1.32 6.52 -154.99 -1.01 0.31 16 24 N -0.27 -3.06 12.21 32.79 0.40 -2.66 16 25 N -0.30 -3.23 12.21 29.69 0.36 -2.87 16 26 C 0.15 0.94 12.74 -89.94 -1.15 -0.21 16 27 N -0.48 -2.54 3.15 -122.69 -0.39 -2.93 16 28 C 0.07 0.06 10.84 59.85 0.65 0.70 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.49 7.18 -51.93 -0.37 0.12 16 31 H 0.06 0.42 6.68 -51.93 -0.35 0.07 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.40 4.16 7.65 -40.82 -0.31 3.85 16 35 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 36 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.03 0.21 8.05 -51.93 -0.42 -0.20 16 39 H 0.08 0.54 7.44 -51.93 -0.39 0.15 16 40 H 0.35 2.77 6.60 -39.29 -0.26 2.51 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.39 7.45 -51.93 -0.39 0.01 16 43 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.22 0.39 8.06 -52.49 -0.42 -0.03 16 45 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 46 H 0.10 -0.12 8.14 -51.93 -0.42 -0.54 16 47 H 0.09 0.01 7.47 -51.92 -0.39 -0.38 16 LS Contribution 403.59 15.07 6.08 6.08 Total: -1.00 -38.58 403.59 -9.35 -47.93 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.42 Total: -0.47 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -0.98 Total: -4.92 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.11 Total: -49.50 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.58 -9.35 -47.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753618848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.127 kcal (2) G-P(sol) polarization free energy of solvation -38.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds