Wall clock time and date at job start Sat Apr 11 2020 06:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47290 * 2 1 4 4 C 1.52999 * 109.47316 * 120.00283 * 2 1 3 5 5 N 1.46496 * 109.47060 * 294.99844 * 4 2 1 6 6 C 1.34771 * 120.00172 * 179.97438 * 5 4 2 7 7 O 1.21285 * 120.00169 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00333 * 180.02562 * 6 5 4 9 9 S 1.80995 * 109.47328 * 180.02562 * 8 6 5 10 10 C 1.76202 * 99.99959 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00115 * 359.97438 * 10 9 8 12 12 C 1.38803 * 120.00021 * 180.02562 * 10 9 8 13 13 N 1.31630 * 119.99986 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99966 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47113 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47047 * 119.99527 * 14 12 10 17 17 H 1.48500 * 109.46943 * 239.99580 * 14 12 10 18 18 C 1.53004 * 109.47245 * 240.00131 * 2 1 3 19 19 N 1.46901 * 109.46916 * 64.99745 * 18 2 1 20 20 C 1.46905 * 110.99870 * 180.02562 * 19 18 2 21 21 H 1.09004 * 109.46962 * 34.99990 * 20 19 18 22 22 C 1.52999 * 109.47094 * 274.99984 * 20 19 18 23 23 C 1.50696 * 109.47161 * 155.00107 * 20 19 18 24 24 N 1.30521 * 126.34509 * 45.02348 * 23 20 19 25 25 N 1.28592 * 109.67387 * 179.97438 * 24 23 20 26 26 C 1.30523 * 109.67369 * 0.02562 * 25 24 23 27 27 N 1.35491 * 126.34867 * 224.71250 * 23 20 19 28 28 C 1.46500 * 126.98048 * 0.03996 * 27 23 20 29 29 H 1.09007 * 109.46679 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46950 * 299.99341 * 1 2 3 31 31 H 1.08997 * 109.47303 * 60.00055 * 1 2 3 32 32 H 1.08996 * 109.47107 * 55.00079 * 4 2 1 33 33 H 1.09000 * 109.47382 * 175.00077 * 4 2 1 34 34 H 0.97007 * 120.00066 * 0.02562 * 5 4 2 35 35 H 1.09004 * 109.46509 * 300.00204 * 8 6 5 36 36 H 1.09000 * 109.47393 * 59.99870 * 8 6 5 37 37 H 0.96996 * 120.00039 * 180.02562 * 13 12 10 38 38 H 1.09004 * 109.46889 * 305.00126 * 18 2 1 39 39 H 1.08995 * 109.47384 * 184.99766 * 18 2 1 40 40 H 1.00901 * 111.00067 * 303.95263 * 19 18 2 41 41 H 1.08997 * 109.47624 * 300.00377 * 22 20 19 42 42 H 1.09006 * 109.47163 * 60.00429 * 22 20 19 43 43 H 1.08999 * 109.47123 * 179.97438 * 22 20 19 44 44 H 1.08002 * 126.34806 * 180.02562 * 26 25 24 45 45 H 1.08995 * 109.47455 * 89.99581 * 28 27 23 46 46 H 1.08998 * 109.47428 * 210.00195 * 28 27 23 47 47 H 1.09007 * 109.46681 * 329.99858 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6526 0.0352 2.4423 6 6 1.9957 -0.4137 3.6659 7 8 2.6257 -1.4439 3.7792 8 6 1.5966 0.3642 4.8933 9 16 2.2000 -0.4889 6.3711 10 6 1.6107 0.6066 7.6190 11 1 1.0586 1.4928 7.3428 12 6 1.8569 0.3312 8.9570 13 7 2.5302 -0.7486 9.2936 14 14 1.2315 1.4923 10.2800 15 1 0.5089 2.6234 9.6446 16 1 0.3088 0.7606 11.1848 17 1 2.3800 2.0160 11.0622 18 6 2.0401 -0.7212 -1.2493 19 7 1.6514 0.0375 -2.4456 20 6 2.1248 -0.6271 -3.6673 21 1 2.0808 -1.7079 -3.5333 22 6 3.5684 -0.2065 -3.9499 23 6 1.2493 -0.2287 -4.8273 24 7 0.8414 0.9786 -5.1097 25 7 0.1116 0.9525 -6.1682 26 6 0.0203 -0.2727 -6.6089 27 7 0.7445 -1.0564 -5.7738 28 6 0.9388 -2.5051 -5.8721 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6055 -1.7198 1.2950 33 1 3.1264 -0.7995 1.2055 34 1 1.1483 0.8590 2.3518 35 1 2.0312 1.3628 4.8477 36 1 0.5102 0.4425 4.9367 37 1 2.7020 -0.9412 10.2286 38 1 1.6054 -1.7198 -1.2952 39 1 3.1263 -0.7994 -1.2057 40 1 0.6528 0.1793 -2.4753 41 1 3.6125 0.8743 -4.0838 42 1 4.2017 -0.4948 -3.1108 43 1 3.9198 -0.6999 -4.8561 44 1 -0.5267 -0.6003 -7.4806 45 1 0.1511 -3.0157 -5.3182 46 1 0.9010 -2.8066 -6.9188 47 1 1.9090 -2.7708 -5.4522 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753618848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:37 Heat of formation + Delta-G solvation = 9.356155 kcal Electronic energy + Delta-G solvation = -26120.688465 eV Core-core repulsion = 22271.918536 eV Total energy + Delta-G solvation = -3848.769929 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -44.12495 -40.68121 -38.86816 -36.79115 -35.92294 -34.58311 -34.22179 -31.76609 -30.73908 -29.93917 -28.46802 -27.80738 -27.52115 -25.92086 -24.13620 -23.18785 -21.78003 -21.25560 -21.08180 -19.79356 -18.27059 -17.74637 -17.47463 -17.26560 -17.11227 -16.87634 -16.67409 -16.34475 -15.80798 -15.73645 -15.42033 -15.02879 -14.68276 -14.45908 -14.29770 -14.22765 -13.93616 -13.75646 -13.67834 -13.30107 -13.24223 -13.15185 -12.90797 -12.81769 -12.62416 -12.60529 -12.37134 -12.02872 -11.81449 -11.75834 -11.68794 -11.30958 -11.15308 -11.11034 -10.94448 -10.31081 -10.26714 -10.08226 -9.47098 -8.65758 -8.34424 -6.12157 0.80360 1.28116 1.41805 1.47731 1.54235 1.59556 1.63636 1.86904 2.26507 2.31591 2.99854 3.03728 3.15554 3.33504 3.73049 3.84902 3.87253 3.90013 3.93692 3.99281 4.06839 4.24981 4.31108 4.36321 4.46473 4.51192 4.52758 4.59002 4.65092 4.66728 4.74308 4.78823 4.88752 4.89783 4.97789 5.00528 5.14231 5.26696 5.31468 5.36323 5.42872 5.49898 5.88314 6.00127 6.20662 6.27717 6.52341 7.07203 7.26353 7.74600 8.75082 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.033317 B = 0.001490 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.208005 B =18790.313305 C =19136.834151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 H 0.089 0.911 4 C 0.128 3.872 5 N -0.711 5.711 6 C 0.534 3.466 7 O -0.567 6.567 8 C -0.131 4.131 9 S -0.151 6.151 10 C -0.547 4.547 11 H 0.082 0.918 12 C 0.014 3.986 13 N -0.911 5.911 14 Si 0.999 3.001 15 H -0.257 1.257 16 H -0.274 1.274 17 H -0.274 1.274 18 C 0.070 3.930 19 N -0.678 5.678 20 C 0.180 3.820 21 H 0.085 0.915 22 C -0.133 4.133 23 C 0.163 3.837 24 N -0.317 5.317 25 N -0.354 5.354 26 C 0.161 3.839 27 N -0.472 5.472 28 C 0.059 3.941 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.414 0.586 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.271 0.729 38 H 0.046 0.954 39 H 0.085 0.915 40 H 0.345 0.655 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.259 0.741 45 H 0.096 0.904 46 H 0.120 0.880 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.026 -3.611 -35.578 36.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 H 0.108 0.892 4 C 0.004 3.996 5 N -0.365 5.365 6 C 0.319 3.681 7 O -0.445 6.445 8 C -0.282 4.282 9 S 0.077 5.923 10 C -0.695 4.695 11 H 0.100 0.900 12 C -0.191 4.191 13 N -0.548 5.548 14 Si 0.820 3.180 15 H -0.181 1.181 16 H -0.199 1.199 17 H -0.199 1.199 18 C -0.059 4.059 19 N -0.312 5.312 20 C 0.068 3.932 21 H 0.102 0.898 22 C -0.192 4.192 23 C -0.106 4.106 24 N -0.157 5.157 25 N -0.193 5.193 26 C -0.127 4.127 27 N -0.162 5.162 28 C -0.082 4.082 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.252 0.748 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.165 0.835 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.275 0.725 45 H 0.114 0.886 46 H 0.139 0.861 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.583 -3.534 -35.193 35.551 hybrid contribution -1.609 -0.061 0.578 1.711 sum -5.192 -3.595 -34.614 35.185 Atomic orbital electron populations 1.21875 0.94290 1.02147 1.02403 1.21211 0.96563 1.00846 0.92015 0.89247 1.21366 0.99868 0.95158 0.83239 1.45751 1.57967 1.28390 1.04401 1.20023 0.78486 0.84713 0.84852 1.90686 1.40963 1.25920 1.86946 1.23384 1.05685 1.03380 0.95767 1.85539 1.74290 1.35803 0.96711 1.23251 1.41466 1.11397 0.93355 0.89963 1.26116 0.94796 0.97557 1.00609 1.70185 1.39008 1.26772 1.18785 0.84907 0.78106 0.77878 0.77061 1.18115 1.19890 1.19922 1.21952 1.01566 0.94521 0.87837 1.60465 1.20524 1.49970 1.00283 1.19873 0.92559 0.97385 0.83372 0.89753 1.21768 0.93106 1.02031 1.02278 1.25106 1.01850 0.87380 0.96295 1.74222 1.12071 1.19478 1.09936 1.74228 1.17266 1.20138 1.07624 1.27247 0.98591 0.87152 0.99701 1.46483 1.37139 1.11690 1.20918 1.22559 1.05289 0.73143 1.07180 0.92551 0.92165 0.91809 0.92176 0.92040 0.74834 0.87327 0.87282 0.91985 0.93598 0.89696 0.83494 0.93120 0.90312 0.91508 0.72533 0.88582 0.86118 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.84 71.98 0.64 -1.34 16 2 C -0.09 -1.22 2.63 -10.79 -0.03 -1.25 16 3 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 4 C 0.13 2.61 5.06 86.38 0.44 3.05 16 5 N -0.71 -17.46 5.28 -463.07 -2.45 -19.91 16 6 C 0.53 19.51 7.85 87.66 0.69 20.20 16 7 O -0.57 -26.05 15.86 -3.05 -0.05 -26.10 16 8 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 9 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 10 C -0.55 -31.39 9.50 67.96 0.65 -30.74 16 11 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 12 C 0.01 0.80 5.49 84.86 0.47 1.26 16 13 N -0.91 -56.05 13.22 21.65 0.29 -55.76 16 14 Si 1.00 43.78 29.55 68.60 2.03 45.80 16 15 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 C 0.07 0.81 4.94 86.30 0.43 1.24 16 19 N -0.68 -9.09 6.30 -495.43 -3.12 -12.21 16 20 C 0.18 1.99 2.92 44.17 0.13 2.11 16 21 H 0.08 0.50 6.90 -2.38 -0.02 0.48 16 22 C -0.13 -1.51 9.40 71.98 0.68 -0.83 16 23 C 0.16 2.45 6.52 137.98 0.90 3.35 16 24 N -0.32 -7.39 12.21 -50.16 -0.61 -8.00 16 25 N -0.35 -7.74 12.21 -59.99 -0.73 -8.47 16 26 C 0.16 1.80 12.74 180.11 2.30 4.09 16 27 N -0.47 -4.07 3.15 -542.08 -1.71 -5.78 16 28 C 0.06 -0.09 10.84 127.77 1.38 1.29 16 29 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.06 0.82 7.18 -2.39 -0.02 0.81 16 31 H 0.06 0.81 6.68 -2.39 -0.02 0.79 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.41 7.66 7.65 -92.70 -0.71 6.95 16 35 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 36 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 37 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.05 0.44 8.05 -2.39 -0.02 0.43 16 39 H 0.08 0.95 7.44 -2.39 -0.02 0.94 16 40 H 0.34 5.12 6.60 -89.69 -0.59 4.53 16 41 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 0.75 7.45 -2.38 -0.02 0.74 16 43 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.26 0.21 8.06 -2.91 -0.02 0.18 16 45 H 0.10 -0.32 8.14 -2.39 -0.02 -0.34 16 46 H 0.12 -0.76 8.14 -2.39 -0.02 -0.78 16 47 H 0.10 -0.34 7.47 -2.38 -0.02 -0.35 16 Total: -1.00 -88.03 403.59 1.27 -86.76 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -0.31 Total: 15.52 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 9.09 Total: -2.31 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -8.33 Total: -110.13 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.05 Total: -26.10 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -88.03 1.27 -86.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753618848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.119 kcal (2) G-P(sol) polarization free energy of solvation -88.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds