Wall clock time and date at job start Sat Apr 11 2020 06:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47279 * 2 1 4 4 C 1.53000 * 109.47042 * 120.00384 * 2 1 3 5 5 N 1.46497 * 109.46711 * 295.00036 * 4 2 1 6 6 C 1.34780 * 119.99569 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00237 * 359.97438 * 6 5 4 8 8 C 1.50709 * 119.99987 * 179.97438 * 6 5 4 9 9 S 1.80998 * 109.47128 * 180.02562 * 8 6 5 10 10 C 1.76196 * 99.99921 * 180.02562 * 9 8 6 11 11 H 1.07999 * 120.00182 * 359.97438 * 10 9 8 12 12 C 1.38799 * 120.00096 * 180.02562 * 10 9 8 13 13 N 1.31629 * 120.00374 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 119.99939 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.46659 * 90.00346 * 14 12 10 16 16 H 1.48496 * 109.47072 * 210.00239 * 14 12 10 17 17 H 1.48503 * 109.46992 * 330.00752 * 14 12 10 18 18 C 1.52998 * 109.46874 * 240.00165 * 2 1 3 19 19 N 1.46901 * 109.47178 * 65.00218 * 18 2 1 20 20 C 1.46902 * 111.00248 * 180.02562 * 19 18 2 21 21 H 1.09007 * 109.46723 * 324.99913 * 20 19 18 22 22 C 1.52998 * 109.47225 * 84.99616 * 20 19 18 23 23 C 1.50697 * 109.47211 * 205.00168 * 20 19 18 24 24 N 1.30519 * 126.34476 * 314.99576 * 23 20 19 25 25 N 1.28600 * 109.66808 * 179.73098 * 24 23 20 26 26 C 1.30516 * 109.67696 * 0.44987 * 25 24 23 27 27 N 1.35495 * 107.30468 * 359.55808 * 26 25 24 28 28 C 1.46499 * 126.97946 * 180.26092 * 27 26 25 29 29 H 1.08998 * 109.46804 * 300.00200 * 1 2 3 30 30 H 1.09000 * 109.46610 * 59.99279 * 1 2 3 31 31 H 1.08989 * 109.47528 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46954 * 54.99137 * 4 2 1 33 33 H 1.08991 * 109.47158 * 174.99642 * 4 2 1 34 34 H 0.96996 * 120.00783 * 359.97438 * 5 4 2 35 35 H 1.08991 * 109.46974 * 300.00019 * 8 6 5 36 36 H 1.08995 * 109.46610 * 60.00252 * 8 6 5 37 37 H 0.96996 * 120.00008 * 179.97438 * 13 12 10 38 38 H 1.09006 * 109.47279 * 305.00517 * 18 2 1 39 39 H 1.09000 * 109.47137 * 185.00282 * 18 2 1 40 40 H 1.00903 * 111.00164 * 56.04625 * 19 18 2 41 41 H 1.08997 * 109.47278 * 300.00669 * 22 20 19 42 42 H 1.09007 * 109.47028 * 60.00483 * 22 20 19 43 43 H 1.09003 * 109.46994 * 180.02562 * 22 20 19 44 44 H 1.08002 * 126.35125 * 179.82818 * 26 25 24 45 45 H 1.09004 * 109.47293 * 90.03308 * 28 27 26 46 46 H 1.09007 * 109.47309 * 210.02845 * 28 27 26 47 47 H 1.09000 * 109.47123 * 330.02746 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6524 0.0352 2.4423 6 6 1.9955 -0.4138 3.6659 7 8 2.6247 -1.4444 3.7792 8 6 1.5973 0.3647 4.8933 9 16 2.2005 -0.4887 6.3711 10 6 1.6111 0.6067 7.6190 11 1 1.0591 1.4930 7.3428 12 6 1.8570 0.3312 8.9569 13 7 1.4171 1.1497 9.8892 14 14 2.8123 -1.2014 9.4347 15 1 4.2619 -0.8836 9.4904 16 1 2.3573 -1.6730 10.7672 17 1 2.5773 -2.2656 8.4260 18 6 2.0400 -0.7212 -1.2493 19 7 1.6514 0.0375 -2.4456 20 6 2.1247 -0.6270 -3.6673 21 1 3.0883 -1.0987 -3.4743 22 6 1.1120 -1.6916 -4.0938 23 6 2.2756 0.3920 -4.7672 24 7 1.4217 1.3297 -5.0754 25 7 1.8746 2.0208 -6.0609 26 6 3.0336 1.5494 -6.4322 27 7 3.3230 0.5047 -5.6194 28 6 4.5243 -0.3331 -5.6548 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5140 -0.8899 31 1 -0.3634 -1.0275 -0.0005 32 1 1.6053 -1.7199 1.2951 33 1 3.1263 -0.7996 1.2055 34 1 1.1489 0.8593 2.3518 35 1 2.0327 1.3629 4.8475 36 1 0.5111 0.4437 4.9368 37 1 1.5887 0.9570 10.8242 38 1 1.6053 -1.7198 -1.2953 39 1 3.1263 -0.7995 -1.2056 40 1 1.9882 0.9874 -2.3967 41 1 1.0028 -2.4286 -3.2982 42 1 0.1485 -1.2199 -4.2868 43 1 1.4635 -2.1850 -5.0000 44 1 3.6501 1.9253 -7.2354 45 1 5.2874 0.0983 -5.0069 46 1 4.2779 -1.3366 -5.3076 47 1 4.9014 -0.3845 -6.6762 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753618849.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:41 Heat of formation + Delta-G solvation = 9.832926 kcal Electronic energy + Delta-G solvation = -26158.313152 eV Core-core repulsion = 22309.563898 eV Total energy + Delta-G solvation = -3848.749254 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.11901 -40.71843 -38.80713 -36.80668 -35.92150 -34.67186 -34.20890 -31.80665 -30.77000 -30.01979 -28.46362 -27.89556 -27.39599 -25.94872 -24.12649 -23.18486 -21.81472 -21.39284 -21.06137 -19.85074 -18.20535 -17.79926 -17.48325 -17.29635 -17.08855 -16.90106 -16.69971 -16.30806 -15.92766 -15.62891 -15.36797 -15.21373 -14.91159 -14.57785 -14.40100 -14.22168 -13.87803 -13.71127 -13.46804 -13.34349 -13.29758 -13.28037 -13.00130 -12.86179 -12.66727 -12.56472 -12.33239 -11.98462 -11.92886 -11.82230 -11.67941 -11.30480 -11.16680 -11.10845 -10.99753 -10.53587 -10.30556 -10.10562 -9.43786 -8.99037 -8.51052 -6.22005 0.80886 0.99897 1.31834 1.47307 1.54070 1.57648 1.58264 1.87361 2.23411 2.27639 2.72030 2.87137 3.04054 3.16374 3.73217 3.82729 3.87111 3.88784 3.95004 4.03089 4.03696 4.23673 4.27057 4.36225 4.46803 4.48192 4.51405 4.61983 4.66374 4.67867 4.76532 4.84439 4.89563 4.93054 4.98386 5.14582 5.15030 5.30463 5.33403 5.45296 5.54018 5.71027 5.88624 6.00728 6.11829 6.27616 6.47920 6.93987 7.20487 7.75054 8.61358 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029645 B = 0.001543 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.276101 B =18144.118418 C =18315.450418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.086 4.086 3 H 0.083 0.917 4 C 0.127 3.873 5 N -0.711 5.711 6 C 0.535 3.465 7 O -0.563 6.563 8 C -0.113 4.113 9 S -0.174 6.174 10 C -0.531 4.531 11 H 0.061 0.939 12 C 0.045 3.955 13 N -0.917 5.917 14 Si 0.915 3.085 15 H -0.262 1.262 16 H -0.259 1.259 17 H -0.236 1.236 18 C 0.071 3.929 19 N -0.675 5.675 20 C 0.181 3.819 21 H 0.084 0.916 22 C -0.132 4.132 23 C 0.164 3.836 24 N -0.317 5.317 25 N -0.354 5.354 26 C 0.161 3.839 27 N -0.473 5.473 28 C 0.060 3.940 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.415 0.585 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.277 0.723 38 H 0.085 0.915 39 H 0.045 0.955 40 H 0.344 0.656 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.065 0.935 44 H 0.258 0.742 45 H 0.095 0.905 46 H 0.103 0.897 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.098 -4.903 -37.568 38.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.105 4.105 3 H 0.101 0.899 4 C 0.003 3.997 5 N -0.364 5.364 6 C 0.320 3.680 7 O -0.442 6.442 8 C -0.264 4.264 9 S 0.052 5.948 10 C -0.678 4.678 11 H 0.080 0.920 12 C -0.160 4.160 13 N -0.555 5.555 14 Si 0.737 3.263 15 H -0.187 1.187 16 H -0.183 1.183 17 H -0.160 1.160 18 C -0.058 4.058 19 N -0.308 5.308 20 C 0.070 3.930 21 H 0.102 0.898 22 C -0.191 4.191 23 C -0.106 4.106 24 N -0.156 5.156 25 N -0.193 5.193 26 C -0.127 4.127 27 N -0.163 5.163 28 C -0.081 4.081 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.252 0.748 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.163 0.837 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.274 0.726 45 H 0.113 0.887 46 H 0.121 0.879 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.280 -5.972 -37.237 38.232 hybrid contribution 1.196 1.021 0.528 1.659 sum 7.477 -4.951 -36.708 37.788 Atomic orbital electron populations 1.21724 0.93819 1.02037 1.01930 1.21209 0.97286 1.00008 0.92033 0.89894 1.21398 0.99778 0.95352 0.83131 1.45750 1.57853 1.28391 1.04443 1.19909 0.78597 0.84713 0.84734 1.90682 1.40998 1.25636 1.86884 1.23283 1.05933 1.03115 0.94056 1.84663 1.75163 1.36045 0.98901 1.22477 1.41144 1.10830 0.93385 0.92048 1.25580 0.95535 0.99578 0.95318 1.70018 1.45785 1.38337 1.01365 0.85853 0.79761 0.80783 0.79880 1.18651 1.18336 1.16013 1.21960 0.98257 0.97932 0.87683 1.60402 1.64415 1.05740 1.00215 1.19864 0.99094 0.89649 0.84439 0.89821 1.21758 0.98575 0.97046 1.01709 1.25132 0.86625 1.00788 0.98034 1.74223 1.25161 1.05855 1.10400 1.74229 1.10535 1.24404 1.10136 1.27233 0.96992 0.89014 0.99508 1.46489 1.18381 1.26230 1.25198 1.22551 0.83340 0.95087 1.07152 0.93134 0.91410 0.92937 0.91925 0.91911 0.74809 0.86951 0.86937 0.91375 0.89629 0.93653 0.83724 0.90269 0.93105 0.91628 0.72622 0.88654 0.87872 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.95 71.98 0.64 -1.33 16 2 C -0.09 -1.09 2.57 -10.79 -0.03 -1.12 16 3 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 4 C 0.13 2.36 5.06 86.38 0.44 2.79 16 5 N -0.71 -16.06 5.28 -463.06 -2.45 -18.51 16 6 C 0.54 18.00 7.85 87.66 0.69 18.68 16 7 O -0.56 -23.59 15.86 -3.03 -0.05 -23.63 16 8 C -0.11 -4.23 6.16 71.24 0.44 -3.79 16 9 S -0.17 -8.79 18.55 -56.49 -1.05 -9.84 16 10 C -0.53 -31.01 10.04 67.95 0.68 -30.33 16 11 H 0.06 3.79 8.03 -2.91 -0.02 3.76 16 12 C 0.05 2.66 5.50 84.86 0.47 3.13 16 13 N -0.92 -55.99 13.97 21.65 0.30 -55.69 16 14 Si 0.92 44.96 27.74 68.60 1.90 46.86 16 15 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.24 -11.56 6.74 99.48 0.67 -10.89 16 18 C 0.07 0.72 4.87 86.30 0.42 1.14 16 19 N -0.67 -8.13 5.75 -495.44 -2.85 -10.98 16 20 C 0.18 1.81 2.93 44.17 0.13 1.94 16 21 H 0.08 0.42 6.89 -2.38 -0.02 0.40 16 22 C -0.13 -1.34 9.40 71.98 0.68 -0.67 16 23 C 0.16 2.35 6.52 137.98 0.90 3.25 16 24 N -0.32 -7.20 12.21 -50.16 -0.61 -7.81 16 25 N -0.35 -7.67 12.21 -59.99 -0.73 -8.40 16 26 C 0.16 1.77 12.74 180.11 2.30 4.06 16 27 N -0.47 -3.92 3.15 -542.06 -1.71 -5.63 16 28 C 0.06 -0.11 10.84 127.77 1.38 1.27 16 29 H 0.05 0.73 7.18 -2.39 -0.02 0.72 16 30 H 0.07 1.06 7.75 -2.39 -0.02 1.04 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.41 7.12 7.66 -92.71 -0.71 6.41 16 35 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 36 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 37 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 38 H 0.09 0.83 7.44 -2.38 -0.02 0.81 16 39 H 0.05 0.38 8.06 -2.39 -0.02 0.36 16 40 H 0.34 4.76 8.35 -89.69 -0.75 4.02 16 41 H 0.08 0.65 7.45 -2.39 -0.02 0.63 16 42 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.26 0.21 8.06 -2.91 -0.02 0.19 16 45 H 0.09 -0.32 8.14 -2.38 -0.02 -0.34 16 46 H 0.10 -0.38 7.46 -2.38 -0.02 -0.40 16 47 H 0.12 -0.78 8.14 -2.39 -0.02 -0.80 16 Total: -1.00 -85.08 403.15 1.39 -83.69 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -0.51 Total: 10.91 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 9.14 Total: -0.97 kcal Atomic # 7 Polarization: -98.98 SS G_CDS: -8.05 Total: -107.02 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.05 Total: -23.63 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.90 Total: 46.86 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.05 Total: -9.84 kcal Total: -85.08 1.39 -83.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753618849.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.526 kcal (2) G-P(sol) polarization free energy of solvation -85.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds