Wall clock time and date at job start Sat Apr 11 2020 06:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47120 * 2 1 4 4 C 1.52999 * 109.47284 * 239.99956 * 2 1 3 5 5 N 1.46506 * 109.47046 * 64.99948 * 4 2 1 6 6 C 1.34772 * 119.99743 * 179.97438 * 5 4 2 7 7 O 1.21286 * 120.00016 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99940 * 179.97438 * 6 5 4 9 9 S 1.81006 * 109.47119 * 180.02562 * 8 6 5 10 10 C 1.76206 * 99.99710 * 180.02562 * 9 8 6 11 11 H 1.07993 * 119.99851 * 0.02562 * 10 9 8 12 12 C 1.38804 * 119.99615 * 179.97438 * 10 9 8 13 13 N 1.31630 * 119.99972 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99795 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46915 * 89.99929 * 14 12 10 16 16 H 1.48494 * 109.47079 * 209.99947 * 14 12 10 17 17 H 1.48502 * 109.47250 * 330.00106 * 14 12 10 18 18 C 1.52998 * 109.47283 * 119.99680 * 2 1 3 19 19 N 1.46901 * 109.47178 * 295.00246 * 18 2 1 20 20 C 1.46902 * 111.00248 * 180.02562 * 19 18 2 21 21 H 1.09007 * 109.46723 * 324.99913 * 20 19 18 22 22 C 1.52998 * 109.47225 * 84.99616 * 20 19 18 23 23 C 1.50697 * 109.47211 * 205.00168 * 20 19 18 24 24 N 1.30519 * 126.34476 * 314.99576 * 23 20 19 25 25 N 1.28600 * 109.66808 * 179.73098 * 24 23 20 26 26 C 1.30516 * 109.67696 * 0.44987 * 25 24 23 27 27 N 1.35495 * 107.30468 * 359.55808 * 26 25 24 28 28 C 1.46499 * 126.97946 * 180.26092 * 27 26 25 29 29 H 1.09000 * 109.47109 * 60.00729 * 1 2 3 30 30 H 1.09004 * 109.46744 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47448 * 299.99666 * 1 2 3 32 32 H 1.09006 * 109.46921 * 184.99509 * 4 2 1 33 33 H 1.08997 * 109.47094 * 304.99373 * 4 2 1 34 34 H 0.96995 * 119.99896 * 359.97438 * 5 4 2 35 35 H 1.09001 * 109.47439 * 299.99785 * 8 6 5 36 36 H 1.09002 * 109.46950 * 60.00136 * 8 6 5 37 37 H 0.97001 * 119.99402 * 179.97438 * 13 12 10 38 38 H 1.09006 * 109.47279 * 175.00545 * 18 2 1 39 39 H 1.09000 * 109.47137 * 55.00310 * 18 2 1 40 40 H 1.00903 * 111.00164 * 56.04625 * 19 18 2 41 41 H 1.09007 * 109.47028 * 60.00483 * 22 20 19 42 42 H 1.09003 * 109.46994 * 180.02562 * 22 20 19 43 43 H 1.08997 * 109.47278 * 300.00669 * 22 20 19 44 44 H 1.08002 * 126.35125 * 179.82818 * 26 25 24 45 45 H 1.09004 * 109.47293 * 90.03308 * 28 27 26 46 46 H 1.09007 * 109.47309 * 210.02845 * 28 27 26 47 47 H 1.09000 * 109.47123 * 330.02746 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6524 0.0354 -2.4424 6 6 1.9965 -0.4131 -3.6659 7 8 2.6274 -1.4427 -3.7791 8 6 1.5973 0.3649 -4.8933 9 16 2.2009 -0.4883 -6.3711 10 6 1.6115 0.6072 -7.6190 11 1 1.0594 1.4933 -7.3427 12 6 1.8577 0.3318 -8.9570 13 7 2.5319 -0.7475 -9.2935 14 14 1.2323 1.4928 -10.2799 15 1 2.2623 2.5254 -10.5596 16 1 0.9514 0.7252 -11.5197 17 1 -0.0141 2.1509 -9.8121 18 6 2.0400 -0.7212 1.2492 19 7 1.6514 0.0375 2.4456 20 6 2.1258 -0.6263 3.6672 21 1 2.0825 -1.7073 3.5335 22 6 3.5693 -0.2047 3.9490 23 6 1.2505 -0.2282 4.8275 24 7 0.8415 0.9787 5.1096 25 7 0.1072 0.9513 6.1650 26 6 0.0223 -0.2728 6.6096 27 7 0.7423 -1.0570 5.7714 28 6 0.9326 -2.5064 5.8663 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 3.1264 -0.7994 -1.2055 33 1 1.6055 -1.7198 -1.2951 34 1 1.1483 0.8590 -2.3518 35 1 0.5110 0.4422 -4.9371 36 1 2.0312 1.3638 -4.8473 37 1 2.7036 -0.9400 -10.2286 38 1 3.1264 -0.7993 1.2056 39 1 1.6055 -1.7197 1.2952 40 1 0.6528 0.1794 2.4753 41 1 3.6126 0.8763 4.0828 42 1 3.9214 -0.6977 4.8552 43 1 4.2023 -0.4926 3.1097 44 1 -0.5245 -0.6008 7.4813 45 1 0.1445 -3.0137 5.3098 46 1 1.9029 -2.7737 5.4475 47 1 0.8923 -2.8104 6.9123 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753618850.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:47 Heat of formation + Delta-G solvation = 37.223777 kcal Electronic energy + Delta-G solvation = -26119.973855 eV Core-core repulsion = 22272.412357 eV Total energy + Delta-G solvation = -3847.561498 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -43.61889 -39.36053 -38.13357 -35.98081 -35.45128 -33.21035 -32.41502 -30.96624 -29.70901 -29.06969 -28.26656 -26.92640 -25.55850 -25.08133 -23.53130 -22.71106 -20.77279 -20.55110 -20.19199 -17.93398 -17.72466 -16.92314 -16.71430 -16.35097 -16.20350 -15.65768 -15.51177 -15.01857 -14.79339 -14.73853 -14.35232 -14.03650 -13.95882 -13.72144 -13.53963 -13.29149 -13.01077 -12.90272 -12.73305 -12.55205 -12.33169 -12.10241 -11.89920 -11.70583 -11.34681 -11.14391 -11.06614 -11.04818 -11.00879 -10.77106 -10.74526 -10.73678 -9.80218 -9.72864 -9.38586 -9.05711 -8.96989 -8.84410 -8.22194 -6.48530 -6.20500 -3.90850 1.25207 1.86695 2.44366 3.03728 3.12771 3.23611 3.28600 3.32343 3.50340 3.61930 3.80423 3.94022 4.08993 4.21890 4.30191 4.34514 4.55770 4.58098 4.60679 4.62850 4.78769 4.91446 5.12296 5.14015 5.14756 5.17360 5.23673 5.32156 5.33410 5.41110 5.53461 5.60593 5.61631 5.68675 5.75155 5.83643 5.91546 5.98082 6.04214 6.16539 6.25309 6.47099 6.65669 6.84531 7.61029 7.73816 8.29152 8.36643 8.64108 9.24954 10.86941 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.033298 B = 0.001490 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.682948 B =18787.168950 C =19132.946807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 H 0.091 0.909 4 C 0.128 3.872 5 N -0.737 5.737 6 C 0.532 3.468 7 O -0.520 6.520 8 C -0.154 4.154 9 S -0.061 6.061 10 C -0.536 4.536 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.066 3.934 19 N -0.669 5.669 20 C 0.178 3.822 21 H 0.059 0.941 22 C -0.137 4.137 23 C 0.165 3.835 24 N -0.267 5.267 25 N -0.297 5.297 26 C 0.149 3.851 27 N -0.477 5.477 28 C 0.069 3.931 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.398 0.602 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.268 0.732 38 H 0.082 0.918 39 H 0.035 0.965 40 H 0.349 0.651 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.070 0.930 44 H 0.219 0.781 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.906 -3.685 34.142 34.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.120 4.120 3 H 0.109 0.891 4 C 0.003 3.997 5 N -0.392 5.392 6 C 0.318 3.682 7 O -0.394 6.394 8 C -0.304 4.304 9 S 0.165 5.835 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.197 1.197 18 C -0.064 4.064 19 N -0.303 5.303 20 C 0.066 3.934 21 H 0.077 0.923 22 C -0.196 4.196 23 C -0.102 4.102 24 N -0.107 5.107 25 N -0.137 5.137 26 C -0.139 4.139 27 N -0.168 5.168 28 C -0.074 4.074 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.232 0.768 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.053 0.947 40 H 0.170 0.830 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.235 0.765 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.454 -3.633 33.692 33.976 hybrid contribution -1.938 0.023 -0.314 1.963 sum -4.392 -3.610 33.378 33.859 Atomic orbital electron populations 1.21896 0.94802 1.02004 1.02252 1.21350 0.96335 1.01309 0.93015 0.89081 1.21225 1.00055 0.95188 0.83238 1.45979 1.59544 1.28162 1.05484 1.20296 0.78669 0.85444 0.83826 1.90698 1.38487 1.23970 1.86246 1.23533 1.04782 1.03491 0.98618 1.85380 1.72866 1.32999 0.92207 1.22878 1.41459 1.11247 0.92792 0.90912 1.24990 0.94864 0.95787 0.97928 1.70021 1.37535 1.24613 1.18152 0.86167 0.79110 0.80075 0.80144 1.20258 1.20766 1.19701 1.22013 1.01374 0.94327 0.88661 1.60488 1.20759 1.49321 0.99729 1.19787 0.93122 0.96177 0.84316 0.92304 1.21807 0.92761 1.03643 1.01366 1.24917 1.02008 0.87560 0.95759 1.74355 1.10254 1.17163 1.08924 1.74352 1.15308 1.17392 1.06608 1.26514 0.99846 0.88156 0.99357 1.46256 1.38400 1.10150 1.22038 1.22173 1.04302 0.75885 1.05088 0.91916 0.92688 0.92344 0.91504 0.91772 0.76754 0.89263 0.89191 0.92207 0.90010 0.94703 0.83049 0.90549 0.92694 0.91065 0.76462 0.89736 0.88940 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.84 37.16 0.33 -0.82 16 2 C -0.10 -0.80 2.63 -90.62 -0.24 -1.03 16 3 H 0.09 0.77 8.14 -51.92 -0.42 0.34 16 4 C 0.13 1.40 5.06 -4.04 -0.02 1.38 16 5 N -0.74 -9.64 5.28 -60.29 -0.32 -9.96 16 6 C 0.53 9.89 7.85 -10.99 -0.09 9.81 16 7 O -0.52 -11.79 15.86 5.55 0.09 -11.70 16 8 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 11 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 14 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 C 0.07 0.44 4.94 -3.82 -0.02 0.42 16 19 N -0.67 -4.91 6.30 -107.95 -0.68 -5.59 16 20 C 0.18 1.12 2.93 -68.87 -0.20 0.92 16 21 H 0.06 0.26 6.89 -51.93 -0.36 -0.10 16 22 C -0.14 -0.85 9.40 37.16 0.35 -0.50 16 23 C 0.17 1.32 6.52 -154.99 -1.01 0.31 16 24 N -0.27 -3.06 12.21 32.79 0.40 -2.66 16 25 N -0.30 -3.23 12.21 29.69 0.36 -2.87 16 26 C 0.15 0.94 12.74 -89.95 -1.15 -0.21 16 27 N -0.48 -2.54 3.15 -122.69 -0.39 -2.93 16 28 C 0.07 0.06 10.84 59.85 0.65 0.70 16 29 H 0.06 0.49 7.18 -51.93 -0.37 0.12 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.42 6.68 -51.93 -0.35 0.07 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.40 4.16 7.65 -40.82 -0.31 3.85 16 35 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 36 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 37 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 38 H 0.08 0.54 7.44 -51.93 -0.39 0.15 16 39 H 0.03 0.21 8.06 -51.93 -0.42 -0.20 16 40 H 0.35 2.77 6.60 -39.29 -0.26 2.51 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.07 0.39 7.45 -51.93 -0.39 0.01 16 44 H 0.22 0.39 8.06 -52.49 -0.42 -0.03 16 45 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 46 H 0.09 0.01 7.46 -51.93 -0.39 -0.38 16 47 H 0.10 -0.12 8.14 -51.93 -0.42 -0.54 16 LS Contribution 403.58 15.07 6.08 6.08 Total: -1.00 -38.55 403.58 -9.35 -47.91 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.42 Total: -0.43 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -0.98 Total: -4.94 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.11 Total: -49.51 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.55 -9.35 -47.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753618850.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.131 kcal (2) G-P(sol) polarization free energy of solvation -38.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds