Wall clock time and date at job start Sat Apr 11 2020 06:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47120 * 2 1 4 4 C 1.52999 * 109.47284 * 239.99956 * 2 1 3 5 5 N 1.46506 * 109.47046 * 64.99948 * 4 2 1 6 6 C 1.34772 * 119.99743 * 179.97438 * 5 4 2 7 7 O 1.21286 * 120.00016 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99940 * 179.97438 * 6 5 4 9 9 S 1.81006 * 109.47119 * 180.02562 * 8 6 5 10 10 C 1.76206 * 99.99710 * 180.02562 * 9 8 6 11 11 H 1.07993 * 119.99851 * 0.02562 * 10 9 8 12 12 C 1.38804 * 119.99615 * 179.97438 * 10 9 8 13 13 N 1.31630 * 119.99972 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99795 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46915 * 89.99929 * 14 12 10 16 16 H 1.48494 * 109.47079 * 209.99947 * 14 12 10 17 17 H 1.48502 * 109.47250 * 330.00106 * 14 12 10 18 18 C 1.52998 * 109.47283 * 119.99680 * 2 1 3 19 19 N 1.46901 * 109.47178 * 295.00246 * 18 2 1 20 20 C 1.46902 * 111.00248 * 180.02562 * 19 18 2 21 21 H 1.09007 * 109.46723 * 324.99913 * 20 19 18 22 22 C 1.52998 * 109.47225 * 84.99616 * 20 19 18 23 23 C 1.50697 * 109.47211 * 205.00168 * 20 19 18 24 24 N 1.30519 * 126.34476 * 314.99576 * 23 20 19 25 25 N 1.28600 * 109.66808 * 179.73098 * 24 23 20 26 26 C 1.30516 * 109.67696 * 0.44987 * 25 24 23 27 27 N 1.35495 * 107.30468 * 359.55808 * 26 25 24 28 28 C 1.46499 * 126.97946 * 180.26092 * 27 26 25 29 29 H 1.09000 * 109.47109 * 60.00729 * 1 2 3 30 30 H 1.09004 * 109.46744 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47448 * 299.99666 * 1 2 3 32 32 H 1.09006 * 109.46921 * 184.99509 * 4 2 1 33 33 H 1.08997 * 109.47094 * 304.99373 * 4 2 1 34 34 H 0.96995 * 119.99896 * 359.97438 * 5 4 2 35 35 H 1.09001 * 109.47439 * 299.99785 * 8 6 5 36 36 H 1.09002 * 109.46950 * 60.00136 * 8 6 5 37 37 H 0.97001 * 119.99402 * 179.97438 * 13 12 10 38 38 H 1.09006 * 109.47279 * 175.00545 * 18 2 1 39 39 H 1.09000 * 109.47137 * 55.00310 * 18 2 1 40 40 H 1.00903 * 111.00164 * 56.04625 * 19 18 2 41 41 H 1.09007 * 109.47028 * 60.00483 * 22 20 19 42 42 H 1.09003 * 109.46994 * 180.02562 * 22 20 19 43 43 H 1.08997 * 109.47278 * 300.00669 * 22 20 19 44 44 H 1.08002 * 126.35125 * 179.82818 * 26 25 24 45 45 H 1.09004 * 109.47293 * 90.03308 * 28 27 26 46 46 H 1.09007 * 109.47309 * 210.02845 * 28 27 26 47 47 H 1.09000 * 109.47123 * 330.02746 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6524 0.0354 -2.4424 6 6 1.9965 -0.4131 -3.6659 7 8 2.6274 -1.4427 -3.7791 8 6 1.5973 0.3649 -4.8933 9 16 2.2009 -0.4883 -6.3711 10 6 1.6115 0.6072 -7.6190 11 1 1.0594 1.4933 -7.3427 12 6 1.8577 0.3318 -8.9570 13 7 2.5319 -0.7475 -9.2935 14 14 1.2323 1.4928 -10.2799 15 1 2.2623 2.5254 -10.5596 16 1 0.9514 0.7252 -11.5197 17 1 -0.0141 2.1509 -9.8121 18 6 2.0400 -0.7212 1.2492 19 7 1.6514 0.0375 2.4456 20 6 2.1258 -0.6263 3.6672 21 1 2.0825 -1.7073 3.5335 22 6 3.5693 -0.2047 3.9490 23 6 1.2505 -0.2282 4.8275 24 7 0.8415 0.9787 5.1096 25 7 0.1072 0.9513 6.1650 26 6 0.0223 -0.2728 6.6096 27 7 0.7423 -1.0570 5.7714 28 6 0.9326 -2.5064 5.8663 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 3.1264 -0.7994 -1.2055 33 1 1.6055 -1.7198 -1.2951 34 1 1.1483 0.8590 -2.3518 35 1 0.5110 0.4422 -4.9371 36 1 2.0312 1.3638 -4.8473 37 1 2.7036 -0.9400 -10.2286 38 1 3.1264 -0.7993 1.2056 39 1 1.6055 -1.7197 1.2952 40 1 0.6528 0.1794 2.4753 41 1 3.6126 0.8763 4.0828 42 1 3.9214 -0.6977 4.8552 43 1 4.2023 -0.4926 3.1097 44 1 -0.5245 -0.6008 7.4813 45 1 0.1445 -3.0137 5.3098 46 1 1.9029 -2.7737 5.4475 47 1 0.8923 -2.8104 6.9123 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753618850.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:46 Heat of formation + Delta-G solvation = 9.406527 kcal Electronic energy + Delta-G solvation = -26121.180101 eV Core-core repulsion = 22272.412357 eV Total energy + Delta-G solvation = -3848.767744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -44.12445 -40.68112 -38.86791 -36.79072 -35.92235 -34.58140 -34.22213 -31.76616 -30.73928 -29.93955 -28.46711 -27.80532 -27.51962 -25.92060 -24.13651 -23.18791 -21.78039 -21.25526 -21.08125 -19.79133 -18.27069 -17.74621 -17.47514 -17.26495 -17.11191 -16.87250 -16.67418 -16.34374 -15.80775 -15.73603 -15.42102 -15.02829 -14.68082 -14.45914 -14.29883 -14.22606 -13.93663 -13.75604 -13.67802 -13.30042 -13.24048 -13.15679 -12.88539 -12.81802 -12.62524 -12.61403 -12.37134 -12.03177 -11.81441 -11.75941 -11.70269 -11.30876 -11.13636 -11.11104 -10.94468 -10.31208 -10.27080 -10.08261 -9.47006 -8.65696 -8.34115 -6.11984 0.80363 1.28048 1.43030 1.47699 1.54188 1.58856 1.63619 1.86841 2.26800 2.31654 3.00065 3.03695 3.15540 3.33608 3.72979 3.84907 3.87257 3.89977 3.93682 3.99260 4.06851 4.25000 4.31134 4.36205 4.46529 4.51173 4.52747 4.58963 4.65121 4.66702 4.74309 4.78792 4.88793 4.89802 4.97750 5.00485 5.14231 5.26661 5.31465 5.36301 5.42668 5.49840 5.88336 6.00147 6.20552 6.27738 6.52365 7.07327 7.26346 7.74552 8.75106 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.033298 B = 0.001490 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.682948 B =18787.168950 C =19132.946807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 H 0.089 0.911 4 C 0.128 3.872 5 N -0.711 5.711 6 C 0.534 3.466 7 O -0.567 6.567 8 C -0.131 4.131 9 S -0.150 6.150 10 C -0.548 4.548 11 H 0.082 0.918 12 C 0.014 3.986 13 N -0.911 5.911 14 Si 0.998 3.002 15 H -0.268 1.268 16 H -0.277 1.277 17 H -0.259 1.259 18 C 0.071 3.929 19 N -0.679 5.679 20 C 0.180 3.820 21 H 0.085 0.915 22 C -0.133 4.133 23 C 0.163 3.837 24 N -0.317 5.317 25 N -0.354 5.354 26 C 0.162 3.838 27 N -0.472 5.472 28 C 0.059 3.941 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.414 0.586 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.271 0.729 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.345 0.655 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.259 0.741 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.023 -3.613 35.569 36.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 H 0.108 0.892 4 C 0.004 3.996 5 N -0.365 5.365 6 C 0.319 3.681 7 O -0.445 6.445 8 C -0.282 4.282 9 S 0.077 5.923 10 C -0.696 4.696 11 H 0.100 0.900 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.820 3.180 15 H -0.193 1.193 16 H -0.202 1.202 17 H -0.183 1.183 18 C -0.059 4.059 19 N -0.313 5.313 20 C 0.068 3.932 21 H 0.102 0.898 22 C -0.192 4.192 23 C -0.106 4.106 24 N -0.157 5.157 25 N -0.193 5.193 26 C -0.127 4.127 27 N -0.162 5.162 28 C -0.082 4.082 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.252 0.748 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.064 0.936 40 H 0.165 0.835 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.275 0.725 45 H 0.114 0.886 46 H 0.121 0.879 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.591 -3.543 35.174 35.534 hybrid contribution -1.604 -0.049 -0.570 1.703 sum -5.195 -3.592 34.604 35.176 Atomic orbital electron populations 1.21875 0.94293 1.02146 1.02401 1.21210 0.96561 1.00847 0.92016 0.89247 1.21369 0.99868 0.95158 0.83239 1.45751 1.57948 1.28405 1.04406 1.20023 0.78490 0.84709 0.84853 1.90686 1.40936 1.25948 1.86947 1.23385 1.05682 1.03385 0.95768 1.85538 1.74307 1.35781 0.96701 1.23219 1.41555 1.11432 0.93366 0.89961 1.26115 0.94802 0.97542 1.00602 1.70183 1.38949 1.26760 1.18826 0.84957 0.78936 0.77581 0.76525 1.19327 1.20246 1.18268 1.21951 1.01566 0.94518 0.87835 1.60450 1.20511 1.50016 1.00290 1.19872 0.92567 0.97389 0.83353 0.89755 1.21768 0.93102 1.02030 1.02280 1.25107 1.01802 0.87335 0.96383 1.74225 1.11892 1.19493 1.10095 1.74227 1.17198 1.20187 1.07649 1.27247 0.98637 0.87171 0.99626 1.46486 1.37287 1.11611 1.20854 1.22560 1.05310 0.73108 1.07193 0.92165 0.92553 0.91813 0.92039 0.92173 0.74836 0.87294 0.87310 0.91989 0.89696 0.93601 0.83490 0.93118 0.91501 0.90314 0.72531 0.88587 0.87919 0.86108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.84 71.98 0.64 -1.34 16 2 C -0.09 -1.22 2.63 -10.79 -0.03 -1.25 16 3 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 4 C 0.13 2.62 5.06 86.38 0.44 3.05 16 5 N -0.71 -17.47 5.28 -463.05 -2.45 -19.91 16 6 C 0.53 19.52 7.85 87.66 0.69 20.21 16 7 O -0.57 -26.05 15.86 -3.05 -0.05 -26.10 16 8 C -0.13 -5.19 6.16 71.24 0.44 -4.76 16 9 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 10 C -0.55 -31.45 9.50 67.96 0.65 -30.80 16 11 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 12 C 0.01 0.81 5.49 84.86 0.47 1.28 16 13 N -0.91 -56.04 13.22 21.65 0.29 -55.75 16 14 Si 1.00 43.74 29.55 68.60 2.03 45.77 16 15 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 16 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 18 C 0.07 0.81 4.94 86.30 0.43 1.24 16 19 N -0.68 -9.10 6.30 -495.44 -3.12 -12.22 16 20 C 0.18 1.99 2.93 44.17 0.13 2.12 16 21 H 0.08 0.50 6.89 -2.38 -0.02 0.48 16 22 C -0.13 -1.51 9.40 71.98 0.68 -0.83 16 23 C 0.16 2.45 6.52 137.98 0.90 3.35 16 24 N -0.32 -7.39 12.21 -50.16 -0.61 -8.00 16 25 N -0.35 -7.74 12.21 -59.99 -0.73 -8.47 16 26 C 0.16 1.80 12.74 180.11 2.30 4.09 16 27 N -0.47 -4.07 3.15 -542.06 -1.71 -5.78 16 28 C 0.06 -0.09 10.84 127.77 1.38 1.29 16 29 H 0.06 0.82 7.18 -2.39 -0.02 0.81 16 30 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.06 0.81 6.68 -2.39 -0.02 0.79 16 32 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 34 H 0.41 7.66 7.65 -92.71 -0.71 6.95 16 35 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 36 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 37 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.08 0.95 7.44 -2.38 -0.02 0.94 16 39 H 0.05 0.44 8.06 -2.39 -0.02 0.43 16 40 H 0.34 5.13 6.60 -89.69 -0.59 4.53 16 41 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.08 0.75 7.45 -2.39 -0.02 0.74 16 44 H 0.26 0.20 8.06 -2.91 -0.02 0.18 16 45 H 0.10 -0.31 8.14 -2.38 -0.02 -0.33 16 46 H 0.10 -0.34 7.46 -2.38 -0.02 -0.35 16 47 H 0.12 -0.76 8.14 -2.39 -0.02 -0.78 16 Total: -1.00 -87.99 403.58 1.27 -86.73 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -0.31 Total: 15.63 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 9.09 Total: -2.35 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -8.33 Total: -110.14 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.05 Total: -26.10 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -87.99 1.27 -86.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753618850.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.132 kcal (2) G-P(sol) polarization free energy of solvation -87.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds