Wall clock time and date at job start Sat Apr 11 2020 06:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46922 * 2 1 4 4 N 1.46897 * 109.47119 * 119.99940 * 2 1 3 5 5 C 1.46894 * 111.00411 * 275.00203 * 4 2 1 6 6 C 1.53003 * 109.47533 * 180.02562 * 5 4 2 7 7 H 1.08994 * 109.47229 * 54.99587 * 6 5 4 8 8 C 1.53002 * 109.46755 * 294.99652 * 6 5 4 9 9 C 1.52999 * 109.47015 * 175.00007 * 6 5 4 10 10 N 1.46506 * 109.46684 * 184.99978 * 9 6 5 11 11 C 1.34777 * 119.99873 * 180.02562 * 10 9 6 12 12 O 1.21284 * 119.99754 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00137 * 179.97438 * 11 10 9 14 14 S 1.80994 * 109.47338 * 179.97438 * 13 11 10 15 15 C 1.76204 * 100.00333 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99652 * 359.97438 * 15 14 13 17 17 C 1.38795 * 120.00282 * 180.02562 * 15 14 13 18 18 N 1.31631 * 119.99837 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00084 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46963 * 60.00178 * 19 17 15 21 21 H 1.48502 * 109.47363 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47564 * 300.00269 * 19 17 15 23 23 C 1.50694 * 109.47080 * 240.00154 * 2 1 3 24 24 N 1.30523 * 126.34551 * 284.68990 * 23 2 1 25 25 N 1.28602 * 109.66995 * 179.82330 * 24 23 2 26 26 C 1.30517 * 109.67224 * 0.44760 * 25 24 23 27 27 N 1.35488 * 126.34805 * 104.99655 * 23 2 1 28 28 C 1.46504 * 126.98130 * 0.02562 * 27 23 2 29 29 H 1.08996 * 109.47398 * 59.99701 * 1 2 3 30 30 H 1.09002 * 109.46922 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47184 * 299.99566 * 1 2 3 32 32 H 1.00905 * 110.99968 * 38.95917 * 4 2 1 33 33 H 1.09005 * 109.47090 * 59.99736 * 5 4 2 34 34 H 1.09005 * 109.46998 * 300.00300 * 5 4 2 35 35 H 1.09000 * 109.47048 * 179.97438 * 8 6 5 36 36 H 1.08994 * 109.47199 * 299.99953 * 8 6 5 37 37 H 1.09001 * 109.46743 * 60.00110 * 8 6 5 38 38 H 1.09000 * 109.47486 * 64.99912 * 9 6 5 39 39 H 1.09001 * 109.47362 * 304.99190 * 9 6 5 40 40 H 0.96995 * 120.00050 * 359.72237 * 10 9 6 41 41 H 1.09004 * 109.47043 * 299.99732 * 13 11 10 42 42 H 1.09000 * 109.46978 * 59.99653 * 13 11 10 43 43 H 0.97002 * 119.99546 * 180.02562 * 18 17 15 44 44 H 1.08003 * 126.34471 * 179.72873 * 26 25 24 45 45 H 1.09000 * 109.47254 * 89.99661 * 28 27 23 46 46 H 1.08997 * 109.47236 * 209.99965 * 28 27 23 47 47 H 1.09006 * 109.46784 * 329.99479 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5962 -0.5330 3.5742 7 1 3.5520 -1.0011 3.3389 8 6 1.5845 -1.6101 3.9704 9 6 2.7800 0.4460 4.7356 10 7 3.3838 -0.2533 5.8726 11 6 3.6397 0.4140 7.0153 12 8 3.3706 1.5934 7.1021 13 6 4.2601 -0.3054 8.1852 14 16 4.4777 0.8526 9.5591 15 6 5.1978 -0.2229 10.7547 16 1 5.3713 -1.2609 10.5122 17 6 5.5411 0.2636 12.0084 18 7 5.3282 1.5284 12.3045 19 14 6.3038 -0.8767 13.2761 20 1 7.5762 -1.4275 12.7444 21 1 6.5763 -0.1186 14.5237 22 1 5.3660 -1.9905 13.5680 23 6 2.0323 -0.7103 -1.2304 24 7 2.0388 -2.0001 -1.4306 25 7 2.5343 -2.2559 -2.5894 26 6 2.8751 -1.1415 -3.1772 27 7 2.5662 -0.1289 -2.3316 28 6 2.7690 1.3037 -2.5612 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.4496 -1.4980 1.4100 33 1 1.0870 0.6162 2.5525 34 1 2.7588 1.0462 2.1182 35 1 1.9507 -2.1487 4.8445 36 1 0.6288 -1.1419 4.2057 37 1 1.4535 -2.3075 3.1429 38 1 1.8102 0.8476 5.0293 39 1 3.4318 1.2620 4.4233 40 1 3.5952 -1.1975 5.8046 41 1 3.6082 -1.1214 8.4971 42 1 5.2300 -0.7070 7.8918 43 1 5.5684 1.8685 13.1806 44 1 3.3207 -1.0446 -4.1563 45 1 3.7552 1.5938 -2.1988 46 1 2.6976 1.5144 -3.6282 47 1 2.0049 1.8689 -2.0274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753618851.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:51 Heat of formation + Delta-G solvation = 35.512849 kcal Electronic energy + Delta-G solvation = -26108.038712 eV Core-core repulsion = 22260.403022 eV Total energy + Delta-G solvation = -3847.635689 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.48016 -39.37233 -38.20942 -35.97765 -35.38469 -33.19715 -32.41663 -30.93340 -29.62061 -29.03683 -28.16057 -26.82738 -25.53253 -25.03331 -23.76515 -22.63381 -20.83622 -20.57015 -20.19356 -17.88548 -17.67588 -16.83092 -16.62233 -16.33978 -15.82771 -15.64889 -15.55329 -15.10155 -14.81639 -14.78774 -14.33106 -14.06930 -13.93691 -13.64663 -13.42274 -13.38503 -13.07201 -12.89354 -12.85877 -12.54757 -12.50034 -12.07985 -11.84514 -11.80592 -11.33275 -11.17112 -11.06516 -11.02993 -11.02455 -10.75359 -10.68184 -10.61490 -9.81265 -9.60786 -9.39175 -9.05197 -8.95285 -8.84588 -8.22887 -6.48803 -6.20469 -3.91011 1.38899 1.98076 2.55825 3.03786 3.12309 3.24656 3.28296 3.31447 3.53177 3.77084 3.86701 4.02698 4.16365 4.21866 4.30901 4.38105 4.48084 4.57313 4.61763 4.68518 4.71086 4.92933 4.98890 5.08645 5.14627 5.17064 5.22833 5.30530 5.34840 5.40692 5.54220 5.54400 5.61868 5.68962 5.75480 5.77431 5.91259 5.99235 6.04243 6.16125 6.34536 6.48621 6.65319 6.88329 7.60533 7.73344 8.36274 8.40598 8.63637 9.24789 10.86905 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028607 B = 0.001501 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.530505 B =18650.968329 C =18846.179487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.174 3.826 3 H 0.094 0.906 4 N -0.675 5.675 5 C 0.067 3.933 6 C -0.101 4.101 7 H 0.088 0.912 8 C -0.153 4.153 9 C 0.128 3.872 10 N -0.737 5.737 11 C 0.532 3.468 12 O -0.520 6.520 13 C -0.154 4.154 14 S -0.061 6.061 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.190 3.810 24 N -0.279 5.279 25 N -0.298 5.298 26 C 0.145 3.855 27 N -0.477 5.477 28 C 0.070 3.930 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.356 0.644 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.217 0.783 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.741 -1.501 -32.537 33.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.061 3.939 3 H 0.112 0.888 4 N -0.308 5.308 5 C -0.062 4.062 6 C -0.120 4.120 7 H 0.106 0.894 8 C -0.210 4.210 9 C 0.003 3.997 10 N -0.392 5.392 11 C 0.318 3.682 12 O -0.394 6.394 13 C -0.304 4.304 14 S 0.166 5.834 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.078 4.078 24 N -0.119 5.119 25 N -0.137 5.137 26 C -0.142 4.142 27 N -0.168 5.168 28 C -0.073 4.073 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.177 0.823 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.234 0.766 45 H 0.103 0.897 46 H 0.112 0.888 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.708 -0.764 -32.191 33.357 hybrid contribution 0.325 -0.991 0.425 1.126 sum -8.382 -1.754 -31.766 32.900 Atomic orbital electron populations 1.22484 0.94631 1.03782 1.02935 1.19649 0.93252 0.95844 0.85144 0.88810 1.60246 1.58125 1.09874 1.02536 1.21958 1.00067 0.94966 0.89201 1.21353 1.00848 0.96418 0.93424 0.89358 1.21902 0.98909 0.98462 1.01733 1.21226 0.98651 0.94578 0.85255 1.45982 1.65772 1.13705 1.13719 1.20296 0.77641 0.87327 0.82970 1.90696 1.50958 1.15655 1.82091 1.23532 1.03008 1.04772 0.99128 1.85373 1.81146 1.12641 1.04246 1.22836 1.47522 0.97849 1.00232 0.90966 1.24986 0.95388 0.95572 0.97604 1.70012 1.44941 1.13288 1.22088 0.86224 0.79504 0.80055 0.79717 1.19946 1.20816 1.19937 1.24706 1.00979 0.91091 0.91025 1.74223 1.17549 1.10739 1.09417 1.74288 1.14325 1.23026 1.02084 1.26436 1.04671 0.83603 0.99536 1.46173 1.46409 1.09389 1.14876 1.22143 1.04063 0.76741 1.04360 0.91905 0.91005 0.90973 0.82305 0.94224 0.90489 0.92009 0.92477 0.92121 0.91670 0.91635 0.76758 0.89238 0.89225 0.92150 0.76633 0.89657 0.88792 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.88 9.14 37.16 0.34 -0.54 16 2 C 0.17 1.05 2.90 -68.87 -0.20 0.85 16 3 H 0.09 0.41 6.89 -51.93 -0.36 0.05 16 4 N -0.67 -4.79 6.23 -107.95 -0.67 -5.46 16 5 C 0.07 0.44 4.94 -3.83 -0.02 0.42 16 6 C -0.10 -0.79 2.63 -90.62 -0.24 -1.02 16 7 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 8 C -0.15 -1.12 8.84 37.16 0.33 -0.79 16 9 C 0.13 1.39 5.06 -4.04 -0.02 1.37 16 10 N -0.74 -9.62 5.29 -60.29 -0.32 -9.94 16 11 C 0.53 9.88 7.85 -10.99 -0.09 9.79 16 12 O -0.52 -11.77 15.86 5.55 0.09 -11.68 16 13 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 14 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 15 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 16 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 18 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 19 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 C 0.19 1.60 6.87 -154.99 -1.07 0.53 16 24 N -0.28 -3.29 12.21 32.79 0.40 -2.89 16 25 N -0.30 -3.43 12.21 29.69 0.36 -3.06 16 26 C 0.14 1.02 12.74 -89.95 -1.15 -0.12 16 27 N -0.48 -2.85 3.15 -122.69 -0.39 -3.24 16 28 C 0.07 0.09 10.84 59.85 0.65 0.74 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 31 H 0.07 0.30 7.45 -51.93 -0.39 -0.09 16 32 H 0.36 2.60 6.73 -39.29 -0.26 2.34 16 33 H 0.04 0.23 7.44 -51.93 -0.39 -0.16 16 34 H 0.08 0.49 8.06 -51.93 -0.42 0.07 16 35 H 0.06 0.48 7.18 -51.93 -0.37 0.11 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.41 6.68 -51.93 -0.35 0.06 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.40 4.16 7.65 -40.82 -0.31 3.84 16 41 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 42 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.22 0.55 8.06 -52.48 -0.42 0.13 16 45 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 46 H 0.09 -0.07 8.14 -51.93 -0.42 -0.49 16 47 H 0.09 0.02 7.46 -51.93 -0.39 -0.37 16 LS Contribution 403.68 15.07 6.08 6.08 Total: -1.00 -38.91 403.68 -9.41 -48.31 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.43 Total: -0.51 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -1.04 Total: -4.70 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.12 Total: -50.09 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.91 -9.41 -48.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753618851.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.827 kcal (2) G-P(sol) polarization free energy of solvation -38.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds