Wall clock time and date at job start Sat Apr 11 2020 06:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47746 * 2 1 4 4 C 1.46499 * 119.99837 * 270.00885 * 3 2 1 5 5 C 1.50706 * 109.46825 * 269.99252 * 4 3 2 6 6 H 1.07999 * 119.99583 * 0.02562 * 5 4 3 7 7 C 1.37868 * 120.00115 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00332 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 120.00166 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46697 * 89.99919 * 9 7 5 11 11 H 1.48491 * 109.47076 * 210.00038 * 9 7 5 12 12 H 1.48498 * 109.46890 * 330.00253 * 9 7 5 13 13 C 1.34779 * 119.99652 * 89.99943 * 3 2 1 14 14 O 1.21282 * 119.99736 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00362 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.46956 * 174.82848 * 15 13 3 17 17 C 1.47187 * 111.00173 * 295.01224 * 16 15 13 18 18 C 1.52982 * 108.72885 * 167.63648 * 17 16 15 19 19 N 1.46009 * 110.04310 * 50.28921 * 18 17 16 20 20 C 1.33720 * 122.92752 * 341.84365 * 19 18 17 21 21 O 1.21282 * 118.62124 * 181.68393 * 20 19 18 22 22 C 1.46890 * 110.99837 * 172.10125 * 16 15 13 23 23 H 1.08997 * 109.36947 * 53.50143 * 22 16 15 24 24 C 1.53001 * 109.39791 * 293.81095 * 22 16 15 25 25 C 1.50700 * 109.47250 * 301.99039 * 24 22 16 26 26 O 1.20831 * 119.99778 * 357.75023 * 25 24 22 27 27 O 1.34223 * 120.00235 * 177.75226 * 25 24 22 28 28 C 1.45206 * 117.00487 * 179.97438 * 27 25 24 29 29 H 1.09004 * 109.46790 * 299.99823 * 1 2 3 30 30 H 1.09002 * 109.47381 * 59.99308 * 1 2 3 31 31 H 1.09001 * 109.47625 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46541 * 239.99719 * 2 1 3 33 33 H 1.09007 * 109.46970 * 120.00853 * 2 1 3 34 34 H 1.08992 * 109.47598 * 29.99020 * 4 3 2 35 35 H 1.08997 * 109.46903 * 150.00040 * 4 3 2 36 36 H 0.96997 * 120.00572 * 180.02562 * 8 7 5 37 37 H 1.09008 * 109.46612 * 54.83077 * 15 13 3 38 38 H 1.08993 * 109.47266 * 294.83442 * 15 13 3 39 39 H 1.09001 * 109.59454 * 47.86333 * 17 16 15 40 40 H 1.09002 * 109.59434 * 287.40858 * 17 16 15 41 41 H 1.08998 * 109.37579 * 170.46411 * 18 17 16 42 42 H 1.09002 * 109.37576 * 290.23492 * 18 17 16 43 43 H 0.97005 * 118.53933 * 161.81934 * 19 18 17 44 44 H 1.09004 * 109.46964 * 61.98310 * 24 22 16 45 45 H 1.08996 * 109.47198 * 181.98753 * 24 22 16 46 46 H 1.09001 * 109.46648 * 59.99511 * 28 27 25 47 47 H 1.08998 * 109.47101 * 179.97438 * 28 27 25 48 48 H 1.09002 * 109.46667 * 300.00000 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7039 6 1 4.3426 1.2301 -1.0963 7 6 4.1493 2.3903 -2.8775 8 7 5.3915 2.1840 -3.2570 9 14 3.0130 3.4359 -3.9288 10 1 3.1157 4.8559 -3.5069 11 1 3.4066 3.3136 -5.3554 12 1 1.6135 2.9692 -3.7596 13 6 2.2431 2.0164 1.1673 14 8 2.6471 3.1600 1.1673 15 6 1.9924 1.3058 2.4724 16 7 2.4267 2.1597 3.5860 17 6 3.8828 2.3715 3.5516 18 6 4.2386 3.4967 4.5251 19 7 3.6299 3.2425 5.8277 20 6 2.6150 2.3894 6.0017 21 8 2.1482 2.2610 7.1137 22 6 2.0286 1.5836 4.8773 23 1 2.3889 0.5569 4.9416 24 6 0.5026 1.5919 4.9886 25 6 -0.0039 3.0039 4.8446 26 8 0.7779 3.9155 4.7114 27 8 -1.3234 3.2489 4.8642 28 6 -1.7393 4.6327 4.7207 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 1.5817 1.6877 -2.0283 35 1 2.0956 3.1409 -1.1383 36 1 5.7178 2.5751 -4.0825 37 1 2.5533 0.3713 2.4908 38 1 0.9281 1.0927 2.5714 39 1 4.1878 2.6507 2.5431 40 1 4.3926 1.4554 3.8497 41 1 5.3216 3.5497 4.6363 42 1 3.8684 4.4442 4.1336 43 1 3.9773 3.7133 6.6014 44 1 0.0774 0.9712 4.1998 45 1 0.2071 1.1973 5.9607 46 1 -1.3832 5.0220 3.7669 47 1 -2.8273 4.6903 4.7530 48 1 -1.3194 5.2244 5.5342 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051794636.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:57 Heat of formation + Delta-G solvation = -153.066882 kcal Electronic energy + Delta-G solvation = -32224.502554 eV Core-core repulsion = 27893.643812 eV Total energy + Delta-G solvation = -4330.858742 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.14588 -40.92837 -40.52191 -38.23834 -37.36118 -36.83974 -35.98060 -34.82012 -32.83805 -31.86171 -30.60502 -29.66057 -28.89828 -27.67618 -25.27551 -24.44304 -24.21891 -23.33441 -21.94590 -20.20806 -19.83310 -19.07340 -18.71282 -18.52822 -18.16185 -17.68555 -17.31806 -17.14681 -17.02778 -16.46743 -16.41896 -15.94232 -15.42592 -15.31429 -15.16841 -14.76896 -14.64717 -14.59170 -14.38148 -14.10503 -13.93661 -13.74651 -13.59110 -13.39472 -13.17148 -12.99389 -12.93284 -12.82133 -12.54637 -12.50239 -12.36197 -12.26243 -12.00914 -11.80541 -11.71452 -11.69877 -11.37111 -11.03032 -10.81328 -10.52009 -10.07564 -9.38817 -9.32850 -8.32342 -6.35965 1.32528 1.36494 1.39673 1.44023 1.51713 1.82453 1.87741 2.13960 2.29940 2.31511 2.78192 3.02725 3.33296 3.53505 3.63008 3.89282 3.93407 4.08956 4.09922 4.23973 4.26721 4.30171 4.33270 4.35241 4.45604 4.47688 4.57659 4.61766 4.69470 4.71096 4.80128 4.84845 4.95061 4.98763 5.06012 5.06985 5.43750 5.49871 5.50251 5.59876 5.68412 5.76303 5.90062 6.25867 6.27466 6.65392 6.79780 6.90657 7.14393 7.25492 7.52904 8.84228 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013241 B = 0.003591 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.140828 B = 7796.171409 C = 8453.942593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.602 5.602 4 C 0.228 3.772 5 C -0.528 4.528 6 H 0.033 0.967 7 C 0.014 3.986 8 N -0.944 5.944 9 Si 0.941 3.059 10 H -0.280 1.280 11 H -0.276 1.276 12 H -0.240 1.240 13 C 0.499 3.501 14 O -0.572 6.572 15 C 0.041 3.959 16 N -0.518 5.518 17 C 0.037 3.963 18 C 0.127 3.873 19 N -0.702 5.702 20 C 0.535 3.465 21 O -0.591 6.591 22 C 0.078 3.922 23 H 0.125 0.875 24 C -0.096 4.096 25 C 0.448 3.552 26 O -0.507 6.507 27 O -0.368 6.368 28 C 0.035 3.965 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.044 0.956 35 H 0.013 0.987 36 H 0.267 0.733 37 H 0.095 0.905 38 H 0.131 0.869 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.106 0.894 42 H 0.054 0.946 43 H 0.404 0.596 44 H 0.148 0.852 45 H 0.139 0.861 46 H 0.049 0.951 47 H 0.131 0.869 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.237 -5.966 16.865 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.334 5.334 4 C 0.106 3.894 5 C -0.567 4.567 6 H 0.052 0.948 7 C -0.184 4.184 8 N -0.585 5.585 9 Si 0.765 3.235 10 H -0.206 1.206 11 H -0.202 1.202 12 H -0.164 1.164 13 C 0.287 3.713 14 O -0.451 6.451 15 C -0.089 4.089 16 N -0.244 5.244 17 C -0.091 4.091 18 C 0.003 3.997 19 N -0.352 5.352 20 C 0.322 3.678 21 O -0.473 6.473 22 C -0.033 4.033 23 H 0.142 0.858 24 C -0.133 4.133 25 C 0.291 3.709 26 O -0.393 6.393 27 O -0.285 6.285 28 C -0.058 4.058 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.149 0.851 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.124 0.876 42 H 0.072 0.928 43 H 0.240 0.760 44 H 0.166 0.834 45 H 0.156 0.844 46 H 0.068 0.932 47 H 0.150 0.850 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.228 -4.739 16.983 22.042 hybrid contribution 0.924 0.720 -0.772 1.403 sum -12.304 -4.018 16.210 20.744 Atomic orbital electron populations 1.22173 0.94117 1.03684 1.02005 1.21805 0.95511 0.81097 1.04132 1.48052 1.64545 1.15184 1.05603 1.19218 0.94735 0.92787 0.82701 1.21544 0.96986 1.31690 1.06490 0.94832 1.25750 0.96497 0.97169 0.98963 1.70033 1.17258 1.46669 1.24509 0.85813 0.80647 0.79100 0.77981 1.20567 1.20158 1.16364 1.21006 0.77444 0.86726 0.86093 1.90658 1.46657 1.20158 1.87596 1.22188 1.04577 0.94747 0.87377 1.62068 1.14623 1.47257 1.00457 1.22500 0.87253 0.98288 1.01062 1.21399 0.98479 0.98335 0.81479 1.45401 1.34802 1.43396 1.11562 1.20046 0.78953 0.79580 0.89256 1.90712 1.61516 1.68797 1.26269 1.21694 0.95477 0.98905 0.87180 0.85775 1.21554 0.92323 0.90792 1.08658 1.24058 0.80635 0.93530 0.72697 1.90732 1.57113 1.47540 1.43950 1.86454 1.25902 1.32345 1.83839 1.23364 1.02437 0.78669 1.01364 0.91841 0.93966 0.88592 0.91135 0.88096 0.93816 0.96910 0.92397 0.88754 0.85128 0.90127 0.91953 0.87583 0.92762 0.76012 0.83443 0.84369 0.93206 0.85050 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 10.24 71.98 0.74 -2.31 16 2 C 0.10 2.45 5.95 86.38 0.51 2.96 16 3 N -0.60 -22.39 2.46 -826.17 -2.03 -24.41 16 4 C 0.23 10.73 4.23 85.63 0.36 11.10 16 5 C -0.53 -30.03 9.94 25.60 0.25 -29.78 16 6 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 7 C 0.01 0.83 5.47 84.65 0.46 1.29 16 8 N -0.94 -58.60 13.96 21.44 0.30 -58.30 16 9 Si 0.94 44.09 27.47 68.60 1.88 45.98 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 12 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 13 C 0.50 18.43 7.15 87.66 0.63 19.06 16 14 O -0.57 -27.24 14.19 -3.04 -0.04 -27.28 16 15 C 0.04 0.97 3.99 85.56 0.34 1.31 16 16 N -0.52 -13.32 2.90 -880.04 -2.56 -15.88 16 17 C 0.04 0.98 5.20 86.24 0.45 1.43 16 18 C 0.13 3.10 7.39 86.47 0.64 3.74 16 19 N -0.70 -16.80 5.52 -466.09 -2.57 -19.37 16 20 C 0.53 13.87 5.69 87.68 0.50 14.36 16 21 O -0.59 -18.19 17.02 -3.04 -0.05 -18.24 16 22 C 0.08 1.59 2.10 44.03 0.09 1.68 16 23 H 0.13 1.68 8.11 -2.39 -0.02 1.66 16 24 C -0.10 -1.66 5.11 29.85 0.15 -1.51 16 25 C 0.45 11.56 7.52 71.24 0.54 12.10 16 26 O -0.51 -16.93 13.80 21.95 0.30 -16.63 16 27 O -0.37 -8.46 10.56 -51.34 -0.54 -9.01 16 28 C 0.04 0.69 10.56 113.37 1.20 1.88 16 29 H 0.06 1.05 7.38 -2.38 -0.02 1.03 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 2.00 8.07 -2.39 -0.02 1.98 16 33 H 0.10 1.84 6.30 -2.38 -0.02 1.83 16 34 H 0.04 1.92 7.13 -2.39 -0.02 1.90 16 35 H 0.01 0.66 6.85 -2.39 -0.02 0.65 16 36 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 37 H 0.09 1.68 7.11 -2.38 -0.02 1.66 16 38 H 0.13 2.23 5.43 -2.39 -0.01 2.21 16 39 H 0.08 2.83 5.88 -2.39 -0.01 2.82 16 40 H 0.06 1.34 8.08 -2.39 -0.02 1.32 16 41 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.40 8.53 8.84 -92.70 -0.82 7.71 16 44 H 0.15 1.47 6.49 -2.38 -0.02 1.45 16 45 H 0.14 2.02 7.74 -2.39 -0.02 2.01 16 46 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 47 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.05 1.10 8.13 -2.39 -0.02 1.08 16 Total: -1.00 -86.91 385.92 1.67 -85.24 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.11 Total: 20.57 kcal Atomic # 6 Polarization: 30.47 SS G_CDS: 6.86 Total: 37.33 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -6.86 Total: -117.96 kcal Atomic # 8 Polarization: -70.82 SS G_CDS: -0.33 Total: -71.16 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.98 kcal Total: -86.91 1.67 -85.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051794636.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.826 kcal (2) G-P(sol) polarization free energy of solvation -86.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds